RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 AEBP2Q6ZN18 517 aaPredicted RBP30.47■■■□□ 2.47
CSDE1-210ENST00000525878 CHIC1Q5VXU3 224 aa29.12■■■□□ 2.25
CSDE1-210ENST00000525878 SENP3Q9H4L4 574 aaPredicted RBP25.92■■□□□ 1.74
CSDE1-210ENST00000525878 PHF23Q9BUL5 403 aaPredicted RBP25.62■■□□□ 1.69
CSDE1-210ENST00000525878 FOXD1Q16676 465 aa24.16■■□□□ 1.46
CSDE1-210ENST00000525878 PLPPR3Q6T4P5 718 aa23.33■■□□□ 1.33
CSDE1-210ENST00000525878 PPP6R1Q9UPN7 881 aa22.75■■□□□ 1.23
CSDE1-210ENST00000525878 ADRA2BP18089 450 aa22.65■■□□□ 1.22
CSDE1-210ENST00000525878 PIAS4Q8N2W9 510 aaPredicted RBP22.56■■□□□ 1.2
CSDE1-210ENST00000525878 MSH5O43196 834 aa22.51■■□□□ 1.19
CSDE1-210ENST00000525878 POTEDQ86YR6 584 aa21.64■■□□□ 1.05
CSDE1-210ENST00000525878 MAPK8IP2Q13387 824 aaPredicted RBP20.75■□□□□ 0.91
CSDE1-210ENST00000525878 SCAF1Q9H7N4 1312 aaKnown RBP20.71■□□□□ 0.91
CSDE1-210ENST00000525878 DMRT2Q9Y5R5 561 aa20.61■□□□□ 0.89
CSDE1-210ENST00000525878 PPP4R3CPQ6ZMV5 832 aa20.47■□□□□ 0.87
CSDE1-210ENST00000525878 CNKSR2Q8WXI2 1034 aa20.05■□□□□ 0.8
CSDE1-210ENST00000525878 HOXD11P31277 338 aaPredicted RBP19.96■□□□□ 0.79
CSDE1-210ENST00000525878 RNF216Q9NWF9 866 aaPredicted RBP19.84■□□□□ 0.77
CSDE1-210ENST00000525878 NCBP3Q53F19 620 aaKnown RBP19.72■□□□□ 0.75
CSDE1-210ENST00000525878 DCAF8L1A6NGE4 600 aa19.62■□□□□ 0.73
CSDE1-210ENST00000525878 NPM3O75607 178 aaKnown RBP19.47■□□□□ 0.71
CSDE1-210ENST00000525878 DNAJC5BQ9UF47 199 aa19.28■□□□□ 0.68
CSDE1-210ENST00000525878 KCNA4P22459 653 aa19.26■□□□□ 0.67
CSDE1-210ENST00000525878 RNF39Q9H2S5 420 aa19.26■□□□□ 0.67
CSDE1-210ENST00000525878 CACNB1Q02641 598 aaPredicted RBP19.14■□□□□ 0.65
CSDE1-210ENST00000525878 C1QBPQ07021 282 aaKnown RBP18.98■□□□□ 0.63
CSDE1-210ENST00000525878 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.92■□□□□ 0.622e-11■□□□□ 10.8
CSDE1-210ENST00000525878 U3KPZ7 1027 aaPredicted RBP18.61■□□□□ 0.57
CSDE1-210ENST00000525878 SLC4A2P04920 1241 aa18.58■□□□□ 0.56
CSDE1-210ENST00000525878 SPINK5Q9NQ38 1064 aaPredicted RBP18.26■□□□□ 0.51
CSDE1-210ENST00000525878 SLC4A1APQ9BWU0 796 aaKnown RBP18.19■□□□□ 0.5
CSDE1-210ENST00000525878 CAPN15O75808 1086 aa18.16■□□□□ 0.5
CSDE1-210ENST00000525878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.11■□□□□ 0.49
CSDE1-210ENST00000525878 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
CSDE1-210ENST00000525878 DSG3P32926 999 aa18.09■□□□□ 0.49
CSDE1-210ENST00000525878 APLP2Q06481 763 aa18.05■□□□□ 0.48
CSDE1-210ENST00000525878 SAMD1Q6SPF0 538 aaPredicted RBP18.03■□□□□ 0.48
CSDE1-210ENST00000525878 MYCNP04198 464 aaPredicted RBP17.99■□□□□ 0.47
CSDE1-210ENST00000525878 ZNF219Q9P2Y4 722 aaPredicted RBP17.93■□□□□ 0.46
CSDE1-210ENST00000525878 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
CSDE1-210ENST00000525878 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
CSDE1-210ENST00000525878 ABCB7O75027 752 aa17.76■□□□□ 0.43
CSDE1-210ENST00000525878 ZBTB22O15209 634 aa17.75■□□□□ 0.43
CSDE1-210ENST00000525878 ATF5Q9Y2D1 282 aaPredicted RBP17.58■□□□□ 0.4
CSDE1-210ENST00000525878 POLA2Q14181 598 aa17.52■□□□□ 0.4
CSDE1-210ENST00000525878 ATXN8OSP0DMR3 200 aa17.38■□□□□ 0.37
CSDE1-210ENST00000525878 RBM42Q9BTD8 480 aaKnown RBP17.22■□□□□ 0.35
CSDE1-210ENST00000525878 ZBTB12Q9Y330 459 aaPredicted RBP17.18■□□□□ 0.34
CSDE1-210ENST00000525878 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
CSDE1-210ENST00000525878 POTEHQ6S545 545 aa16.98■□□□□ 0.31
CSDE1-210ENST00000525878 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
CSDE1-210ENST00000525878 AKT1S1Q96B36 256 aa16.89■□□□□ 0.29
CSDE1-210ENST00000525878 EHMT2Q96KQ7 1210 aa16.88■□□□□ 0.29
CSDE1-210ENST00000525878 FBLN2P98095 1184 aa16.81■□□□□ 0.28
CSDE1-210ENST00000525878 MKRN4PQ13434 485 aaPredicted RBP16.8■□□□□ 0.28
CSDE1-210ENST00000525878 CHRDL2Q6WN34 429 aa16.77■□□□□ 0.28
CSDE1-210ENST00000525878 REM2Q8IYK8 340 aaPredicted RBP16.72■□□□□ 0.27
CSDE1-210ENST00000525878 SPDYE2BA6NHP3 402 aa16.69■□□□□ 0.26
CSDE1-210ENST00000525878 SPDYE6P0CI01 402 aa16.69■□□□□ 0.26
CSDE1-210ENST00000525878 SPDYE2Q495Y8 402 aa16.69■□□□□ 0.26
CSDE1-210ENST00000525878 PITPNM1O00562 1244 aa16.53■□□□□ 0.24
CSDE1-210ENST00000525878 SSUH2Q9Y2M2 353 aa16.52■□□□□ 0.24
CSDE1-210ENST00000525878 ZNF692Q9BU19 519 aaPredicted RBP16.48■□□□□ 0.23
CSDE1-210ENST00000525878 PIP4P2Q8N4L2 257 aa16.42■□□□□ 0.22
CSDE1-210ENST00000525878 FXR2P51116 673 aaKnown RBP eCLIP16.39■□□□□ 0.21
CSDE1-210ENST00000525878 SPDYE1Q8NFV5 336 aaPredicted RBP16.33■□□□□ 0.2
CSDE1-210ENST00000525878 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
CSDE1-210ENST00000525878 CLEC11AQ9Y240 323 aa16.23■□□□□ 0.19
CSDE1-210ENST00000525878 PRKAR2AP13861 404 aaKnown RBP16.09■□□□□ 0.17
CSDE1-210ENST00000525878 SPDYE4A6NLX3 237 aa16.05■□□□□ 0.16
CSDE1-210ENST00000525878 PRR29P0C7W0 189 aa16.03■□□□□ 0.16
CSDE1-210ENST00000525878 HAX1O00165 279 aa16.02■□□□□ 0.16
CSDE1-210ENST00000525878 SP7Q8TDD2 431 aaPredicted RBP16.02■□□□□ 0.16
CSDE1-210ENST00000525878 CHADLQ6NUI6 762 aa15.94■□□□□ 0.14
CSDE1-210ENST00000525878 EVX2Q03828 476 aa15.91■□□□□ 0.14
CSDE1-210ENST00000525878 C19orf67A6NJJ6 358 aa15.86■□□□□ 0.13
CSDE1-210ENST00000525878 STAG3Q9UJ98 1225 aa15.86■□□□□ 0.13
CSDE1-210ENST00000525878 PROM2Q8N271 834 aa15.8■□□□□ 0.12
CSDE1-210ENST00000525878 FARP1Q9Y4F1 1045 aaPredicted RBP15.76■□□□□ 0.11
CSDE1-210ENST00000525878 CREBZFQ9NS37 354 aa15.73■□□□□ 0.11
CSDE1-210ENST00000525878 CD44P16070 742 aaKnown RBP15.59■□□□□ 0.09
CSDE1-210ENST00000525878 GABBR2O75899 941 aa15.54■□□□□ 0.08
CSDE1-210ENST00000525878 MNX1P50219 401 aaPredicted RBP15.52■□□□□ 0.08
CSDE1-210ENST00000525878 FKBP8Q14318 412 aa15.43■□□□□ 0.06
CSDE1-210ENST00000525878 NPM1P06748 294 aaKnown RBP eCLIP15.4■□□□□ 0.06
CSDE1-210ENST00000525878 CLCN6P51797 869 aa15.4■□□□□ 0.06
CSDE1-210ENST00000525878 ZNF579Q8NAF0 562 aaKnown RBP15.4■□□□□ 0.06
CSDE1-210ENST00000525878 ZRANB1Q9UGI0 708 aa15.39■□□□□ 0.05
CSDE1-210ENST00000525878 PAK3O75914 559 aaPredicted RBP15.27■□□□□ 0.04
CSDE1-210ENST00000525878 MIER1Q8N108 512 aa15.26■□□□□ 0.03
CSDE1-210ENST00000525878 POTEIP0CG38 1075 aa15.25■□□□□ 0.03
CSDE1-210ENST00000525878 PLEKHG5O94827 1062 aa15.2■□□□□ 0.02
CSDE1-210ENST00000525878 PHF12Q96QT6 1004 aa15.2■□□□□ 0.02
CSDE1-210ENST00000525878 GALR2O43603 387 aaPredicted RBP15.17■□□□□ 0.02
CSDE1-210ENST00000525878 PLCD3Q8N3E9 789 aa15.15■□□□□ 0.02
CSDE1-210ENST00000525878 DCBLD2Q96PD2 775 aa15.11■□□□□ 0.01
CSDE1-210ENST00000525878 CCDC61Q9Y6R9 512 aa15.11■□□□□ 0.01
CSDE1-210ENST00000525878 TSPYL2Q9H2G4 693 aaPredicted RBP15.1■□□□□ 0.01
CSDE1-210ENST00000525878 RASEFQ8IZ41 740 aa15.08■□□□□ 0
CSDE1-210ENST00000525878 FBXO3Q9UK99 471 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms