RNA–Protein interactions for RNA: ENST00000592076.5

TMC6-222, Transcript of transmembrane channel like 6, human

TSL 3

Gene TMC6, Length 693 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMC6-222	ENST00000592076	NISCH	Q9Y2I1	1504 aa		39.62	■■■■□ 3.93
TMC6-222	ENST00000592076	CCDC180	Q9P1Z9	1646 aa		35.38	■■■■□ 3.25
TMC6-222	ENST00000592076	ABCC9	O60706	1549 aa		34.78	■■■■□ 3.16
TMC6-222	ENST00000592076	RB1CC1	Q8TDY2	1594 aa		33.4	■■■□□ 2.94
TMC6-222	ENST00000592076	NACAD	O15069	1562 aa		33.3	■■■□□ 2.92
TMC6-222	ENST00000592076	DCAF8L2	P0C7V8	631 aa		33.28	■■■□□ 2.92
TMC6-222	ENST00000592076	MYO15B	Q96JP2	1530 aa		32.98	■■■□□ 2.87
TMC6-222	ENST00000592076	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.97	■■■□□ 2.87
TMC6-222	ENST00000592076	DCAF1	Q9Y4B6	1507 aa		32.77	■■■□□ 2.84
TMC6-222	ENST00000592076	UNC13A	Q9UPW8	1703 aa		32.6	■■■□□ 2.81
TMC6-222	ENST00000592076	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.44	■■■□□ 2.78	5e-7	■□□□□ 10.4
TMC6-222	ENST00000592076	BICRA	Q9NZM4	1560 aa		32.29	■■■□□ 2.76
TMC6-222	ENST00000592076	SCRIB	Q14160	1630 aa		32.27	■■■□□ 2.76
TMC6-222	ENST00000592076	SHROOM4	Q9ULL8	1493 aa		32.03	■■■□□ 2.72
TMC6-222	ENST00000592076	DNAJC5B	Q9UF47	199 aa		31.96	■■■□□ 2.71
TMC6-222	ENST00000592076	EIF4G1	Q04637	1599 aa	Known RBP	31.52	■■■□□ 2.64
TMC6-222	ENST00000592076	CC2D2A	Q9P2K1	1620 aa		31.45	■■■□□ 2.62
TMC6-222	ENST00000592076	CECR2	Q9BXF3	1484 aa		31.27	■■■□□ 2.6
TMC6-222	ENST00000592076	SMARCA4	P51532	1647 aa		30.82	■■■□□ 2.52
TMC6-222	ENST00000592076	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.78	■■■□□ 2.52
TMC6-222	ENST00000592076	SMARCA2	P51531	1590 aa		30.69	■■■□□ 2.5
TMC6-222	ENST00000592076	ATAD2B	Q9ULI0	1458 aa		30.67	■■■□□ 2.5
TMC6-222	ENST00000592076	NCAPD3	P42695	1498 aa		30.66	■■■□□ 2.5
TMC6-222	ENST00000592076	HMGXB3	Q12766	1538 aa		30.54	■■■□□ 2.48
TMC6-222	ENST00000592076	MROH2B	Q7Z745	1585 aa		30.52	■■■□□ 2.48
TMC6-222	ENST00000592076	PEG3	Q9GZU2	1588 aa		30.48	■■■□□ 2.47
TMC6-222	ENST00000592076	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.47	■■■□□ 2.47
TMC6-222	ENST00000592076	WIZ	O95785	1651 aa		30.21	■■■□□ 2.43
TMC6-222	ENST00000592076	RSF1	Q96T23	1441 aa	Predicted RBP	30.09	■■■□□ 2.41
TMC6-222	ENST00000592076	ERCC6	Q03468	1493 aa		30.07	■■■□□ 2.4
TMC6-222	ENST00000592076	NES	P48681	1621 aa		30	■■■□□ 2.39
TMC6-222	ENST00000592076	LAMC3	Q9Y6N6	1575 aa		29.95	■■■□□ 2.39
TMC6-222	ENST00000592076	TOP2A	P11388	1531 aa	Known RBP	29.9	■■■□□ 2.38
TMC6-222	ENST00000592076	CADPS	Q9ULU8	1353 aa		29.78	■■■□□ 2.36
TMC6-222	ENST00000592076	PDS5B	Q9NTI5	1447 aa		29.77	■■■□□ 2.36
TMC6-222	ENST00000592076	CUX2	O14529	1486 aa		29.76	■■■□□ 2.35
TMC6-222	ENST00000592076	KIF21A	Q7Z4S6	1674 aa		29.69	■■■□□ 2.34
TMC6-222	ENST00000592076	THOC2	Q8NI27	1593 aa	Known RBP	29.61	■■■□□ 2.33
TMC6-222	ENST00000592076	CFTR	P13569	1480 aa		29.55	■■■□□ 2.32
TMC6-222	ENST00000592076	CCDC88B	A6NC98	1476 aa		29.5	■■■□□ 2.31
TMC6-222	ENST00000592076	CEP164	Q9UPV0	1460 aa		29.49	■■■□□ 2.31
TMC6-222	ENST00000592076	FANCD2	Q9BXW9	1451 aa		29.48	■■■□□ 2.31
TMC6-222	ENST00000592076	MRC2	Q9UBG0	1479 aa		29.47	■■■□□ 2.31
TMC6-222	ENST00000592076	PRDM2	Q13029	1718 aa		29.42	■■■□□ 2.3
TMC6-222	ENST00000592076	WDR62	O43379	1518 aa		29.35	■■■□□ 2.29
TMC6-222	ENST00000592076	SUPT5H	O00267	1087 aa	Known RBP	29.28	■■■□□ 2.28
TMC6-222	ENST00000592076	URB2	Q14146	1524 aa	Known RBP	29.15	■■■□□ 2.26
TMC6-222	ENST00000592076	DNAJC5	Q9H3Z4	198 aa		29.01	■■■□□ 2.23
TMC6-222	ENST00000592076	ABCC8	Q09428	1581 aa		29.01	■■■□□ 2.23
TMC6-222	ENST00000592076	TOPBP1	Q92547	1522 aa		28.97	■■■□□ 2.23
TMC6-222	ENST00000592076	DNMBP	Q6XZF7	1577 aa		28.95	■■■□□ 2.22
TMC6-222	ENST00000592076	IFT140	Q96RY7	1462 aa		28.86	■■■□□ 2.21
TMC6-222	ENST00000592076	POLA1	P09884	1462 aa	Predicted RBP	28.71	■■■□□ 2.19
TMC6-222	ENST00000592076	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.69	■■■□□ 2.18
TMC6-222	ENST00000592076	CUX1	P39880	1505 aa		28.66	■■■□□ 2.18
TMC6-222	ENST00000592076	TARBP1	Q13395	1621 aa	Known RBP	28.65	■■■□□ 2.18
TMC6-222	ENST00000592076	EIF4G3	O43432	1585 aa	Known RBP	28.63	■■■□□ 2.17
TMC6-222	ENST00000592076	FGD5	Q6ZNL6	1462 aa		28.63	■■■□□ 2.17
TMC6-222	ENST00000592076	SOGA1	O94964	1423 aa		28.6	■■■□□ 2.17
TMC6-222	ENST00000592076	RAD54L2	Q9Y4B4	1467 aa		28.57	■■■□□ 2.16
TMC6-222	ENST00000592076	AQR	O60306	1485 aa	Known RBP eCLIP	28.52	■■■□□ 2.16	5e-10	■■■■■ 42.4
TMC6-222	ENST00000592076	OSCAR	Q8IYS5	282 aa		28.49	■■■□□ 2.15
TMC6-222	ENST00000592076	WDR97	A6NE52	1622 aa		28.47	■■■□□ 2.15
TMC6-222	ENST00000592076	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.44	■■■□□ 2.14
TMC6-222	ENST00000592076	TDRD9	Q8NDG6	1382 aa	Known RBP	28.44	■■■□□ 2.14
TMC6-222	ENST00000592076	BIVM-ERCC5	R4GMW8	1640 aa		28.4	■■■□□ 2.14
TMC6-222	ENST00000592076	TOP2B	Q02880	1626 aa		28.39	■■■□□ 2.13
TMC6-222	ENST00000592076	SYNJ1	O43426	1573 aa		28.36	■■■□□ 2.13
TMC6-222	ENST00000592076	ABCA10	Q8WWZ4	1543 aa		28.33	■■■□□ 2.13
TMC6-222	ENST00000592076	CHD1	O14646	1710 aa		28.32	■■■□□ 2.12
TMC6-222	ENST00000592076	FBLN2	P98095	1184 aa		28.31	■■■□□ 2.12
TMC6-222	ENST00000592076	GRIN2B	Q13224	1484 aa		28.3	■■■□□ 2.12
TMC6-222	ENST00000592076	SNAPC4	Q5SXM2	1469 aa		28.29	■■■□□ 2.12
TMC6-222	ENST00000592076	GAPVD1	Q14C86	1478 aa		28.27	■■■□□ 2.12
TMC6-222	ENST00000592076	PBRM1	Q86U86	1689 aa		28.26	■■■□□ 2.12
TMC6-222	ENST00000592076	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.26	■■■□□ 2.11
TMC6-222	ENST00000592076	ABCA5	Q8WWZ7	1642 aa		28.24	■■■□□ 2.11
TMC6-222	ENST00000592076	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.18	■■■□□ 2.1
TMC6-222	ENST00000592076	SYNJ2	O15056	1496 aa		28.14	■■■□□ 2.09
TMC6-222	ENST00000592076	TRIM41	Q8WV44	630 aa		28.08	■■■□□ 2.09
TMC6-222	ENST00000592076	RIMBP3C	A6NJZ7	1639 aa		28.05	■■■□□ 2.08
TMC6-222	ENST00000592076	RIMBP3B	A6NNM3	1639 aa		28.05	■■■□□ 2.08
TMC6-222	ENST00000592076	RIMBP3	Q9UFD9	1639 aa		28.05	■■■□□ 2.08
TMC6-222	ENST00000592076	ARHGEF11	O15085	1522 aa		28.02	■■■□□ 2.08
TMC6-222	ENST00000592076	ADAMTS12	P58397	1594 aa		28	■■■□□ 2.07
TMC6-222	ENST00000592076	ERICH3	Q5RHP9	1530 aa		28	■■■□□ 2.07
TMC6-222	ENST00000592076	CLASP1	Q7Z460	1538 aa		27.95	■■■□□ 2.06
TMC6-222	ENST00000592076	FHAD1	B1AJZ9	1412 aa		27.94	■■■□□ 2.06
TMC6-222	ENST00000592076	GRIN2A	Q12879	1464 aa		27.93	■■■□□ 2.06
TMC6-222	ENST00000592076	KIF27	Q86VH2	1401 aa		27.89	■■■□□ 2.06
TMC6-222	ENST00000592076	NUP160	Q12769	1436 aa		27.78	■■■□□ 2.04
TMC6-222	ENST00000592076	CYB5RL	Q6IPT4	315 aa		27.78	■■■□□ 2.04
TMC6-222	ENST00000592076	CEP170	Q5SW79	1584 aa		27.77	■■■□□ 2.04
TMC6-222	ENST00000592076	ARAP1	Q96P48	1450 aa		27.76	■■■□□ 2.03
TMC6-222	ENST00000592076	CUL7	Q14999	1698 aa		27.75	■■■□□ 2.03
TMC6-222	ENST00000592076	IGF1R	P08069	1367 aa		27.71	■■■□□ 2.03
TMC6-222	ENST00000592076	CARMIL1	Q5VZK9	1371 aa		27.6	■■■□□ 2.01
TMC6-222	ENST00000592076	SHROOM2	Q13796	1616 aa		27.59	■■■□□ 2.01
TMC6-222	ENST00000592076	RUSC2	Q8N2Y8	1516 aa		27.59	■■■□□ 2.01
TMC6-222	ENST00000592076	ERCC6L2	Q5T890	1561 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms