RNA–Protein interactions for RNA: ENST00000529046.5

CSDE1-212, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-212ENST00000529046 AEBP2Q6ZN18 517 aaPredicted RBP26.75■■□□□ 1.87
CSDE1-212ENST00000529046 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
CSDE1-212ENST00000529046 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
CSDE1-212ENST00000529046 PHF23Q9BUL5 403 aaPredicted RBP22.7■■□□□ 1.22
CSDE1-212ENST00000529046 FOXD1Q16676 465 aa21.16■□□□□ 0.98
CSDE1-212ENST00000529046 PLPPR3Q6T4P5 718 aa20.91■□□□□ 0.94
CSDE1-212ENST00000529046 POTEDQ86YR6 584 aa20.69■□□□□ 0.9
CSDE1-212ENST00000529046 PPP6R1Q9UPN7 881 aa20.12■□□□□ 0.81
CSDE1-212ENST00000529046 ADRA2BP18089 450 aa20.1■□□□□ 0.81
CSDE1-212ENST00000529046 PIAS4Q8N2W9 510 aaPredicted RBP19.92■□□□□ 0.78
CSDE1-212ENST00000529046 MSH5O43196 834 aa19.66■□□□□ 0.74
CSDE1-212ENST00000529046 SCAF1Q9H7N4 1312 aaKnown RBP18.43■□□□□ 0.54
CSDE1-212ENST00000529046 PPP4R3CPQ6ZMV5 832 aa18.38■□□□□ 0.53
CSDE1-212ENST00000529046 MAPK8IP2Q13387 824 aaPredicted RBP18.31■□□□□ 0.52
CSDE1-212ENST00000529046 DMRT2Q9Y5R5 561 aa18.14■□□□□ 0.49
CSDE1-212ENST00000529046 CNKSR2Q8WXI2 1034 aa17.94■□□□□ 0.46
CSDE1-212ENST00000529046 NCBP3Q53F19 620 aaKnown RBP17.84■□□□□ 0.45
CSDE1-212ENST00000529046 RNF216Q9NWF9 866 aaPredicted RBP17.65■□□□□ 0.42
CSDE1-212ENST00000529046 HOXD11P31277 338 aaPredicted RBP17.64■□□□□ 0.41
CSDE1-212ENST00000529046 KCNA4P22459 653 aa17.63■□□□□ 0.41
CSDE1-212ENST00000529046 NPM3O75607 178 aaKnown RBP17.55■□□□□ 0.4
CSDE1-212ENST00000529046 DCAF8L1A6NGE4 600 aa17.4■□□□□ 0.38
CSDE1-212ENST00000529046 CACNB1Q02641 598 aaPredicted RBP17.34■□□□□ 0.37
CSDE1-212ENST00000529046 DNAJC5BQ9UF47 199 aa17.07■□□□□ 0.32
CSDE1-212ENST00000529046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.84■□□□□ 0.293e-11■■□□□ 13.8
CSDE1-212ENST00000529046 RNF39Q9H2S5 420 aa16.79■□□□□ 0.28
CSDE1-212ENST00000529046 SLC4A1APQ9BWU0 796 aaKnown RBP16.76■□□□□ 0.27
CSDE1-212ENST00000529046 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
CSDE1-212ENST00000529046 C1QBPQ07021 282 aaKnown RBP16.59■□□□□ 0.25
CSDE1-212ENST00000529046 U3KPZ7 1027 aaPredicted RBP16.51■□□□□ 0.23
CSDE1-212ENST00000529046 FOXD4L1Q9NU39 408 aa16.33■□□□□ 0.2
CSDE1-212ENST00000529046 MYCNP04198 464 aaPredicted RBP16.25■□□□□ 0.19
CSDE1-212ENST00000529046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.24■□□□□ 0.19
CSDE1-212ENST00000529046 HNRNPUL2Q1KMD3 747 aaKnown RBP16.24■□□□□ 0.19
CSDE1-212ENST00000529046 ZBTB22O15209 634 aa16.21■□□□□ 0.19
CSDE1-212ENST00000529046 SAMD1Q6SPF0 538 aaPredicted RBP16.17■□□□□ 0.18
CSDE1-212ENST00000529046 APLP2Q06481 763 aa16.16■□□□□ 0.18
CSDE1-212ENST00000529046 SPINK5Q9NQ38 1064 aaPredicted RBP16.13■□□□□ 0.17
CSDE1-212ENST00000529046 CAPN15O75808 1086 aa16.11■□□□□ 0.17
CSDE1-212ENST00000529046 POTEHQ6S545 545 aa16.03■□□□□ 0.16
CSDE1-212ENST00000529046 EHMT2Q96KQ7 1210 aa15.97■□□□□ 0.15
CSDE1-212ENST00000529046 TRHP20396 242 aaPredicted RBP15.96■□□□□ 0.15
CSDE1-212ENST00000529046 ZNF219Q9P2Y4 722 aaPredicted RBP15.96■□□□□ 0.15
CSDE1-212ENST00000529046 DSG3P32926 999 aa15.88■□□□□ 0.13
CSDE1-212ENST00000529046 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
CSDE1-212ENST00000529046 ATF5Q9Y2D1 282 aaPredicted RBP15.8■□□□□ 0.12
CSDE1-212ENST00000529046 ABCB7O75027 752 aa15.78■□□□□ 0.12
CSDE1-212ENST00000529046 ATXN8OSP0DMR3 200 aa15.78■□□□□ 0.12
CSDE1-212ENST00000529046 POLA2Q14181 598 aa15.62■□□□□ 0.09
CSDE1-212ENST00000529046 ZBTB12Q9Y330 459 aaPredicted RBP15.38■□□□□ 0.05
CSDE1-212ENST00000529046 FBLN2P98095 1184 aa15.21■□□□□ 0.03
CSDE1-212ENST00000529046 RBM42Q9BTD8 480 aaKnown RBP15.18■□□□□ 0.02
CSDE1-212ENST00000529046 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
CSDE1-212ENST00000529046 MKRN4PQ13434 485 aaPredicted RBP15.1■□□□□ 0.01
CSDE1-212ENST00000529046 SPDYE2BA6NHP3 402 aa14.93□□□□□ -0.02
CSDE1-212ENST00000529046 SPDYE6P0CI01 402 aa14.93□□□□□ -0.02
CSDE1-212ENST00000529046 SPDYE2Q495Y8 402 aa14.93□□□□□ -0.02
CSDE1-212ENST00000529046 AKT1S1Q96B36 256 aa14.91□□□□□ -0.02
CSDE1-212ENST00000529046 ZNF692Q9BU19 519 aaPredicted RBP14.82□□□□□ -0.04
CSDE1-212ENST00000529046 REM2Q8IYK8 340 aaPredicted RBP14.76□□□□□ -0.05
CSDE1-212ENST00000529046 SSUH2Q9Y2M2 353 aa14.76□□□□□ -0.05
CSDE1-212ENST00000529046 SPDYE4A6NLX3 237 aa14.66□□□□□ -0.06
CSDE1-212ENST00000529046 CHRDL2Q6WN34 429 aa14.64□□□□□ -0.07
CSDE1-212ENST00000529046 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
CSDE1-212ENST00000529046 PITPNM1O00562 1244 aa14.6□□□□□ -0.07
CSDE1-212ENST00000529046 SP7Q8TDD2 431 aaPredicted RBP14.59□□□□□ -0.07
CSDE1-212ENST00000529046 SPDYE1Q8NFV5 336 aaPredicted RBP14.56□□□□□ -0.08
CSDE1-212ENST00000529046 CLEC11AQ9Y240 323 aa14.51□□□□□ -0.09
CSDE1-212ENST00000529046 FKBP8Q14318 412 aa14.41□□□□□ -0.1
CSDE1-212ENST00000529046 PIP4P2Q8N4L2 257 aa14.38□□□□□ -0.11
CSDE1-212ENST00000529046 FXR2P51116 673 aaKnown RBP eCLIP14.37□□□□□ -0.112e-6■□□□□ 10.7
CSDE1-212ENST00000529046 PROM2Q8N271 834 aa14.35□□□□□ -0.11
CSDE1-212ENST00000529046 PRR29P0C7W0 189 aa14.33□□□□□ -0.12
CSDE1-212ENST00000529046 STAG3Q9UJ98 1225 aa14.33□□□□□ -0.12
CSDE1-212ENST00000529046 PRKAR2AP13861 404 aaKnown RBP14.24□□□□□ -0.13
CSDE1-212ENST00000529046 CHADLQ6NUI6 762 aa14.17□□□□□ -0.14
CSDE1-212ENST00000529046 CREBZFQ9NS37 354 aa14.07□□□□□ -0.16
CSDE1-212ENST00000529046 HAX1O00165 279 aa14.04□□□□□ -0.16
CSDE1-212ENST00000529046 FARP1Q9Y4F1 1045 aaPredicted RBP14.01□□□□□ -0.17
CSDE1-212ENST00000529046 FBXO3Q9UK99 471 aa13.99□□□□□ -0.17
CSDE1-212ENST00000529046 MIER1Q8N108 512 aa13.93□□□□□ -0.18
CSDE1-212ENST00000529046 PLEKHG5O94827 1062 aa13.92□□□□□ -0.18
CSDE1-212ENST00000529046 C19orf67A6NJJ6 358 aa13.9□□□□□ -0.18
CSDE1-212ENST00000529046 PLCD3Q8N3E9 789 aa13.89□□□□□ -0.19
CSDE1-212ENST00000529046 MNX1P50219 401 aaPredicted RBP13.87□□□□□ -0.19
CSDE1-212ENST00000529046 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
CSDE1-212ENST00000529046 CD44P16070 742 aaKnown RBP13.82□□□□□ -0.2
CSDE1-212ENST00000529046 EVX2Q03828 476 aa13.82□□□□□ -0.2
CSDE1-212ENST00000529046 VASPP50552 380 aaPredicted RBP13.79□□□□□ -0.2
CSDE1-212ENST00000529046 ZBTB47Q9UFB7 747 aaPredicted RBP13.77□□□□□ -0.21
CSDE1-212ENST00000529046 PAK3O75914 559 aaPredicted RBP13.71□□□□□ -0.21
CSDE1-212ENST00000529046 ZRANB1Q9UGI0 708 aa13.69□□□□□ -0.22
CSDE1-212ENST00000529046 LHX8Q68G74 356 aa13.66□□□□□ -0.22
CSDE1-212ENST00000529046 KLHL34Q8N239 644 aa13.63□□□□□ -0.23
CSDE1-212ENST00000529046 ZNF579Q8NAF0 562 aaKnown RBP13.62□□□□□ -0.23
CSDE1-212ENST00000529046 TSPYL2Q9H2G4 693 aaPredicted RBP13.61□□□□□ -0.23
CSDE1-212ENST00000529046 RASEFQ8IZ41 740 aa13.6□□□□□ -0.23
CSDE1-212ENST00000529046 NUBP1P53384 320 aa13.58□□□□□ -0.24
CSDE1-212ENST00000529046 GABBR2O75899 941 aa13.57□□□□□ -0.24
CSDE1-212ENST00000529046 IFNLR1Q8IU57 520 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms