RNA–Protein interactions for RNA: ENST00000525132.1

CSDE1-209, Transcript of cold shock domain containing E1, humanhuman

TSL 5

Gene CSDE1, Length 521 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-209ENST00000525132 AEBP2Q6ZN18 517 aaPredicted RBP15.07■□□□□ 0
CSDE1-209ENST00000525132 POTEDQ86YR6 584 aa14.22□□□□□ -0.13
CSDE1-209ENST00000525132 CHIC1Q5VXU3 224 aa14.07□□□□□ -0.16
CSDE1-209ENST00000525132 SENP3Q9H4L4 574 aaPredicted RBP12.7□□□□□ -0.38
CSDE1-209ENST00000525132 PHF23Q9BUL5 403 aaPredicted RBP12.57□□□□□ -0.4
CSDE1-209ENST00000525132 FOXD1Q16676 465 aa12.08□□□□□ -0.48
CSDE1-209ENST00000525132 MSH5O43196 834 aa11.82□□□□□ -0.52
CSDE1-209ENST00000525132 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
CSDE1-209ENST00000525132 CACNB1Q02641 598 aaPredicted RBP11.08□□□□□ -0.64
CSDE1-209ENST00000525132 DNAJC5Q9H3Z4 198 aa11.04□□□□□ -0.64
CSDE1-209ENST00000525132 PIAS4Q8N2W9 510 aaPredicted RBP11.03□□□□□ -0.64
CSDE1-209ENST00000525132 PPP6R1Q9UPN7 881 aa10.94□□□□□ -0.66
CSDE1-209ENST00000525132 ADRA2BP18089 450 aa10.85□□□□□ -0.67
CSDE1-209ENST00000525132 POTEHQ6S545 545 aa10.83□□□□□ -0.68
CSDE1-209ENST00000525132 DNAJC5BQ9UF47 199 aa10.78□□□□□ -0.68
CSDE1-209ENST00000525132 MAPK8IP2Q13387 824 aaPredicted RBP10.15□□□□□ -0.78
CSDE1-209ENST00000525132 DMRT2Q9Y5R5 561 aa10.06□□□□□ -0.8
CSDE1-209ENST00000525132 PPP4R3CPQ6ZMV5 832 aa10□□□□□ -0.81
CSDE1-209ENST00000525132 RNF39Q9H2S5 420 aa9.93□□□□□ -0.82
CSDE1-209ENST00000525132 TRIM41Q8WV44 630 aa9.91□□□□□ -0.82
CSDE1-209ENST00000525132 ILDR1Q86SU0 546 aaPredicted RBP9.86□□□□□ -0.83
CSDE1-209ENST00000525132 SCAF1Q9H7N4 1312 aaKnown RBP9.82□□□□□ -0.84
CSDE1-209ENST00000525132 KCNA4P22459 653 aa9.79□□□□□ -0.84
CSDE1-209ENST00000525132 ABCC9O60706 1549 aa9.74□□□□□ -0.85
CSDE1-209ENST00000525132 CNKSR2Q8WXI2 1034 aa9.73□□□□□ -0.85
CSDE1-209ENST00000525132 C1QBPQ07021 282 aaKnown RBP9.7□□□□□ -0.86
CSDE1-209ENST00000525132 NCBP3Q53F19 620 aaKnown RBP9.65□□□□□ -0.86
CSDE1-209ENST00000525132 NPM3O75607 178 aaKnown RBP9.64□□□□□ -0.87
CSDE1-209ENST00000525132 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
CSDE1-209ENST00000525132 DCAF8L1A6NGE4 600 aa9.59□□□□□ -0.87
CSDE1-209ENST00000525132 RNF216Q9NWF9 866 aaPredicted RBP9.57□□□□□ -0.88
CSDE1-209ENST00000525132 PLSCR2Q9NRY7 297 aa9.56□□□□□ -0.88
CSDE1-209ENST00000525132 SP7Q8TDD2 431 aaPredicted RBP9.41□□□□□ -0.9
CSDE1-209ENST00000525132 SLC4A1APQ9BWU0 796 aaKnown RBP9.24□□□□□ -0.93
CSDE1-209ENST00000525132 SOCS7O14512 581 aa9.17□□□□□ -0.94
CSDE1-209ENST00000525132 SLC4A2P04920 1241 aa9.16□□□□□ -0.94
CSDE1-209ENST00000525132 ZBTB22O15209 634 aa9.09□□□□□ -0.95
CSDE1-209ENST00000525132 LMTK3Q96Q04 1460 aa9.07□□□□□ -0.96
CSDE1-209ENST00000525132 ILDR2Q71H61 639 aa9.02□□□□□ -0.97
CSDE1-209ENST00000525132 PABPN1Q86U42 306 aaKnown RBP eCLIP9.01□□□□□ -0.97
CSDE1-209ENST00000525132 FOXD4L1Q9NU39 408 aa8.98□□□□□ -0.97
CSDE1-209ENST00000525132 CSRNP3Q8WYN3 585 aa8.97□□□□□ -0.97
CSDE1-209ENST00000525132 CUX2O14529 1486 aa8.96□□□□□ -0.97
CSDE1-209ENST00000525132 U3KPZ7 1027 aaPredicted RBP8.96□□□□□ -0.98
CSDE1-209ENST00000525132 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.95□□□□□ -0.985e-11■■□□□ 11.8
CSDE1-209ENST00000525132 DSG3P32926 999 aa8.94□□□□□ -0.98
CSDE1-209ENST00000525132 CECR2Q9BXF3 1484 aa8.91□□□□□ -0.98
CSDE1-209ENST00000525132 EHMT2Q96KQ7 1210 aa8.9□□□□□ -0.98
CSDE1-209ENST00000525132 SPINK5Q9NQ38 1064 aaPredicted RBP8.88□□□□□ -0.99
CSDE1-209ENST00000525132 MYCNP04198 464 aaPredicted RBP8.86□□□□□ -0.99
CSDE1-209ENST00000525132 TRHP20396 242 aaPredicted RBP8.84□□□□□ -0.99
CSDE1-209ENST00000525132 CHRDL2Q6WN34 429 aa8.84□□□□□ -0.99
CSDE1-209ENST00000525132 LHX8Q68G74 356 aa8.8□□□□□ -1
CSDE1-209ENST00000525132 FBXO41Q8TF61 875 aa8.77□□□□□ -1.01
CSDE1-209ENST00000525132 CAPN15O75808 1086 aa8.75□□□□□ -1.01
CSDE1-209ENST00000525132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.71□□□□□ -1.02
CSDE1-209ENST00000525132 ATXN8OSP0DMR3 200 aa8.71□□□□□ -1.02
CSDE1-209ENST00000525132 HNRNPUL2Q1KMD3 747 aaKnown RBP8.71□□□□□ -1.02
CSDE1-209ENST00000525132 SAMD1Q6SPF0 538 aaPredicted RBP8.71□□□□□ -1.02
CSDE1-209ENST00000525132 ATF5Q9Y2D1 282 aaPredicted RBP8.69□□□□□ -1.02
CSDE1-209ENST00000525132 DISP3Q9P2K9 1392 aa8.68□□□□□ -1.02
CSDE1-209ENST00000525132 CC2D2AQ9P2K1 1620 aa8.65□□□□□ -1.02
CSDE1-209ENST00000525132 NISCHQ9Y2I1 1504 aa8.62□□□□□ -1.03
CSDE1-209ENST00000525132 APLP2Q06481 763 aa8.59□□□□□ -1.03
CSDE1-209ENST00000525132 ABCB7O75027 752 aa8.57□□□□□ -1.04
CSDE1-209ENST00000525132 HAX1O00165 279 aa8.56□□□□□ -1.04
CSDE1-209ENST00000525132 ZNF219Q9P2Y4 722 aaPredicted RBP8.53□□□□□ -1.04
CSDE1-209ENST00000525132 ERCC6Q03468 1493 aa8.47□□□□□ -1.05
CSDE1-209ENST00000525132 RIMBP3CA6NJZ7 1639 aa8.41□□□□□ -1.06
CSDE1-209ENST00000525132 RIMBP3BA6NNM3 1639 aa8.41□□□□□ -1.06
CSDE1-209ENST00000525132 RIMBP3Q9UFD9 1639 aa8.41□□□□□ -1.06
CSDE1-209ENST00000525132 OSCARQ8IYS5 282 aa8.41□□□□□ -1.06
CSDE1-209ENST00000525132 RBM42Q9BTD8 480 aaKnown RBP8.41□□□□□ -1.06
CSDE1-209ENST00000525132 KDM4FA0A1W2PPD8 638 aa8.4□□□□□ -1.06
CSDE1-209ENST00000525132 ERCC6L2Q5T890 1561 aa8.39□□□□□ -1.07
CSDE1-209ENST00000525132 RB1CC1Q8TDY2 1594 aa8.39□□□□□ -1.07
CSDE1-209ENST00000525132 POLA2Q14181 598 aa8.39□□□□□ -1.07
CSDE1-209ENST00000525132 CYB5RLQ6IPT4 315 aa8.39□□□□□ -1.07
CSDE1-209ENST00000525132 POTEMA6NI47 508 aa8.37□□□□□ -1.07
CSDE1-209ENST00000525132 PCDH10Q9P2E7 1040 aa8.36□□□□□ -1.07
CSDE1-209ENST00000525132 EVX2Q03828 476 aa8.34□□□□□ -1.07
CSDE1-209ENST00000525132 MKRN4PQ13434 485 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-209ENST00000525132 PIP4P2Q8N4L2 257 aa8.29□□□□□ -1.08
CSDE1-209ENST00000525132 BICRAQ9NZM4 1560 aa8.29□□□□□ -1.08
CSDE1-209ENST00000525132 POTEGQ6S5H5 508 aa8.28□□□□□ -1.08
CSDE1-209ENST00000525132 ZBTB12Q9Y330 459 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-209ENST00000525132 SPATA31D1Q6ZQQ2 1576 aa8.25□□□□□ -1.09
CSDE1-209ENST00000525132 HECW2Q9P2P5 1572 aa8.25□□□□□ -1.09
CSDE1-209ENST00000525132 UNC13AQ9UPW8 1703 aa8.21□□□□□ -1.09
CSDE1-209ENST00000525132 ARHGEF11O15085 1522 aa8.21□□□□□ -1.1
CSDE1-209ENST00000525132 IFFO2Q5TF58 517 aa8.21□□□□□ -1.1
CSDE1-209ENST00000525132 EIF4G1Q04637 1599 aaKnown RBP8.19□□□□□ -1.1
CSDE1-209ENST00000525132 BAZ1AQ9NRL2 1556 aaPredicted RBP8.17□□□□□ -1.1
CSDE1-209ENST00000525132 SYNJ2O15056 1496 aa8.16□□□□□ -1.1
CSDE1-209ENST00000525132 FBLN2P98095 1184 aa8.16□□□□□ -1.1
CSDE1-209ENST00000525132 REM2Q8IYK8 340 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-209ENST00000525132 AKT1S1Q96B36 256 aa8.12□□□□□ -1.11
CSDE1-209ENST00000525132 FXR2P51116 673 aaKnown RBP eCLIP8.1□□□□□ -1.11
CSDE1-209ENST00000525132 SSUH2Q9Y2M2 353 aa8.1□□□□□ -1.11
CSDE1-209ENST00000525132 PROM2Q8N271 834 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms