RNA–Protein interactions for RNA: ENST00000524652.1

CSDE1-208, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-208ENST00000524652 AEBP2Q6ZN18 517 aaPredicted RBP19.27■□□□□ 0.68
CSDE1-208ENST00000524652 CHIC1Q5VXU3 224 aa18.52■□□□□ 0.56
CSDE1-208ENST00000524652 SENP3Q9H4L4 574 aaPredicted RBP16.47■□□□□ 0.23
CSDE1-208ENST00000524652 PHF23Q9BUL5 403 aaPredicted RBP16.24■□□□□ 0.19
CSDE1-208ENST00000524652 FOXD1Q16676 465 aa15.28■□□□□ 0.04
CSDE1-208ENST00000524652 PLPPR3Q6T4P5 718 aa14.91□□□□□ -0.02
CSDE1-208ENST00000524652 PPP6R1Q9UPN7 881 aa14.41□□□□□ -0.1
CSDE1-208ENST00000524652 ADRA2BP18089 450 aa14.36□□□□□ -0.11
CSDE1-208ENST00000524652 PIAS4Q8N2W9 510 aaPredicted RBP14.34□□□□□ -0.11
CSDE1-208ENST00000524652 MSH5O43196 834 aa14.29□□□□□ -0.12
CSDE1-208ENST00000524652 POTEDQ86YR6 584 aa13.57□□□□□ -0.24
CSDE1-208ENST00000524652 SCAF1Q9H7N4 1312 aaKnown RBP13.22□□□□□ -0.29
CSDE1-208ENST00000524652 MAPK8IP2Q13387 824 aaPredicted RBP13.12□□□□□ -0.31
CSDE1-208ENST00000524652 DMRT2Q9Y5R5 561 aa13.08□□□□□ -0.32
CSDE1-208ENST00000524652 PPP4R3CPQ6ZMV5 832 aa13.06□□□□□ -0.32
CSDE1-208ENST00000524652 CNKSR2Q8WXI2 1034 aa12.8□□□□□ -0.36
CSDE1-208ENST00000524652 HOXD11P31277 338 aaPredicted RBP12.68□□□□□ -0.38
CSDE1-208ENST00000524652 NCBP3Q53F19 620 aaKnown RBP12.64□□□□□ -0.39
CSDE1-208ENST00000524652 RNF216Q9NWF9 866 aaPredicted RBP12.64□□□□□ -0.39
CSDE1-208ENST00000524652 DCAF8L1A6NGE4 600 aa12.48□□□□□ -0.41
CSDE1-208ENST00000524652 NPM3O75607 178 aaKnown RBP12.44□□□□□ -0.42
CSDE1-208ENST00000524652 KCNA4P22459 653 aa12.34□□□□□ -0.43
CSDE1-208ENST00000524652 DNAJC5BQ9UF47 199 aa12.27□□□□□ -0.45
CSDE1-208ENST00000524652 RNF39Q9H2S5 420 aa12.19□□□□□ -0.46
CSDE1-208ENST00000524652 CACNB1Q02641 598 aaPredicted RBP12.09□□□□□ -0.47
CSDE1-208ENST00000524652 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.05□□□□□ -0.483e-14■□□□□ 10.8
CSDE1-208ENST00000524652 C1QBPQ07021 282 aaKnown RBP12.04□□□□□ -0.48
CSDE1-208ENST00000524652 U3KPZ7 1027 aaPredicted RBP11.82□□□□□ -0.52
CSDE1-208ENST00000524652 SLC4A2P04920 1241 aa11.81□□□□□ -0.52
CSDE1-208ENST00000524652 SLC4A1APQ9BWU0 796 aaKnown RBP11.71□□□□□ -0.53
CSDE1-208ENST00000524652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.62□□□□□ -0.55
CSDE1-208ENST00000524652 HNRNPUL2Q1KMD3 747 aaKnown RBP11.62□□□□□ -0.55
CSDE1-208ENST00000524652 APLP2Q06481 763 aa11.58□□□□□ -0.56
CSDE1-208ENST00000524652 SPINK5Q9NQ38 1064 aaPredicted RBP11.57□□□□□ -0.56
CSDE1-208ENST00000524652 CAPN15O75808 1086 aa11.55□□□□□ -0.56
CSDE1-208ENST00000524652 SAMD1Q6SPF0 538 aaPredicted RBP11.55□□□□□ -0.56
CSDE1-208ENST00000524652 MYCNP04198 464 aaPredicted RBP11.53□□□□□ -0.56
CSDE1-208ENST00000524652 FOXD4L1Q9NU39 408 aa11.5□□□□□ -0.57
CSDE1-208ENST00000524652 DSG3P32926 999 aa11.46□□□□□ -0.57
CSDE1-208ENST00000524652 ZNF219Q9P2Y4 722 aaPredicted RBP11.46□□□□□ -0.57
CSDE1-208ENST00000524652 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
CSDE1-208ENST00000524652 ZBTB22O15209 634 aa11.35□□□□□ -0.59
CSDE1-208ENST00000524652 ABCB7O75027 752 aa11.28□□□□□ -0.6
CSDE1-208ENST00000524652 ATF5Q9Y2D1 282 aaPredicted RBP11.18□□□□□ -0.62
CSDE1-208ENST00000524652 ATXN8OSP0DMR3 200 aa11.16□□□□□ -0.62
CSDE1-208ENST00000524652 POLA2Q14181 598 aa11.15□□□□□ -0.62
CSDE1-208ENST00000524652 ZBTB12Q9Y330 459 aaPredicted RBP11.01□□□□□ -0.65
CSDE1-208ENST00000524652 CSRNP3Q8WYN3 585 aa11□□□□□ -0.65
CSDE1-208ENST00000524652 RBM42Q9BTD8 480 aaKnown RBP10.98□□□□□ -0.65
CSDE1-208ENST00000524652 EHMT2Q96KQ7 1210 aa10.94□□□□□ -0.66
CSDE1-208ENST00000524652 OSCARQ8IYS5 282 aa10.8□□□□□ -0.68
CSDE1-208ENST00000524652 FBLN2P98095 1184 aa10.79□□□□□ -0.68
CSDE1-208ENST00000524652 AKT1S1Q96B36 256 aa10.74□□□□□ -0.69
CSDE1-208ENST00000524652 MKRN4PQ13434 485 aaPredicted RBP10.69□□□□□ -0.7
CSDE1-208ENST00000524652 POTEHQ6S545 545 aa10.68□□□□□ -0.7
CSDE1-208ENST00000524652 SPDYE2BA6NHP3 402 aa10.66□□□□□ -0.7
CSDE1-208ENST00000524652 SPDYE6P0CI01 402 aa10.66□□□□□ -0.7
CSDE1-208ENST00000524652 SPDYE2Q495Y8 402 aa10.66□□□□□ -0.7
CSDE1-208ENST00000524652 CHRDL2Q6WN34 429 aa10.62□□□□□ -0.71
CSDE1-208ENST00000524652 REM2Q8IYK8 340 aaPredicted RBP10.61□□□□□ -0.71
CSDE1-208ENST00000524652 SSUH2Q9Y2M2 353 aa10.54□□□□□ -0.72
CSDE1-208ENST00000524652 ZNF692Q9BU19 519 aaPredicted RBP10.53□□□□□ -0.72
CSDE1-208ENST00000524652 PITPNM1O00562 1244 aa10.5□□□□□ -0.73
CSDE1-208ENST00000524652 SPDYE1Q8NFV5 336 aaPredicted RBP10.43□□□□□ -0.74
CSDE1-208ENST00000524652 FXR2P51116 673 aaKnown RBP eCLIP10.39□□□□□ -0.75
CSDE1-208ENST00000524652 PIP4P2Q8N4L2 257 aa10.39□□□□□ -0.75
CSDE1-208ENST00000524652 PABPN1Q86U42 306 aaKnown RBP eCLIP10.38□□□□□ -0.75
CSDE1-208ENST00000524652 CLEC11AQ9Y240 323 aa10.35□□□□□ -0.75
CSDE1-208ENST00000524652 SPDYE4A6NLX3 237 aa10.3□□□□□ -0.76
CSDE1-208ENST00000524652 PRR29P0C7W0 189 aa10.23□□□□□ -0.77
CSDE1-208ENST00000524652 PRKAR2AP13861 404 aaKnown RBP10.23□□□□□ -0.77
CSDE1-208ENST00000524652 STAG3Q9UJ98 1225 aa10.18□□□□□ -0.78
CSDE1-208ENST00000524652 HAX1O00165 279 aa10.15□□□□□ -0.78
CSDE1-208ENST00000524652 CHADLQ6NUI6 762 aa10.12□□□□□ -0.79
CSDE1-208ENST00000524652 PROM2Q8N271 834 aa10.12□□□□□ -0.79
CSDE1-208ENST00000524652 SP7Q8TDD2 431 aaPredicted RBP10.11□□□□□ -0.79
CSDE1-208ENST00000524652 C19orf67A6NJJ6 358 aa10.04□□□□□ -0.8
CSDE1-208ENST00000524652 FARP1Q9Y4F1 1045 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-208ENST00000524652 CREBZFQ9NS37 354 aa10.01□□□□□ -0.81
CSDE1-208ENST00000524652 EVX2Q03828 476 aa10□□□□□ -0.81
CSDE1-208ENST00000524652 FKBP8Q14318 412 aa9.97□□□□□ -0.81
CSDE1-208ENST00000524652 CD44P16070 742 aaKnown RBP9.92□□□□□ -0.82
CSDE1-208ENST00000524652 MNX1P50219 401 aaPredicted RBP9.88□□□□□ -0.83
CSDE1-208ENST00000524652 NPM1P06748 294 aaKnown RBP eCLIP9.87□□□□□ -0.83
CSDE1-208ENST00000524652 CLCN6P51797 869 aa9.83□□□□□ -0.84
CSDE1-208ENST00000524652 GABBR2O75899 941 aa9.82□□□□□ -0.84
CSDE1-208ENST00000524652 PLEKHG5O94827 1062 aa9.82□□□□□ -0.84
CSDE1-208ENST00000524652 PAK3O75914 559 aaPredicted RBP9.8□□□□□ -0.84
CSDE1-208ENST00000524652 ZNF579Q8NAF0 562 aaKnown RBP9.8□□□□□ -0.84
CSDE1-208ENST00000524652 ZRANB1Q9UGI0 708 aa9.8□□□□□ -0.84
CSDE1-208ENST00000524652 MIER1Q8N108 512 aa9.79□□□□□ -0.84
CSDE1-208ENST00000524652 FBXO3Q9UK99 471 aa9.77□□□□□ -0.85
CSDE1-208ENST00000524652 PLCD3Q8N3E9 789 aa9.75□□□□□ -0.85
CSDE1-208ENST00000524652 ZBTB47Q9UFB7 747 aaPredicted RBP9.73□□□□□ -0.85
CSDE1-208ENST00000524652 PHF12Q96QT6 1004 aa9.66□□□□□ -0.86
CSDE1-208ENST00000524652 TSPYL2Q9H2G4 693 aaPredicted RBP9.64□□□□□ -0.87
CSDE1-208ENST00000524652 CCDC61Q9Y6R9 512 aa9.64□□□□□ -0.87
CSDE1-208ENST00000524652 GALR2O43603 387 aaPredicted RBP9.63□□□□□ -0.87
CSDE1-208ENST00000524652 RASEFQ8IZ41 740 aa9.62□□□□□ -0.87
CSDE1-208ENST00000524652 VASPP50552 380 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms