Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 GSE1-206ENST00000438180 1741 ntTSL 1 (best)17.46■□□□□ 0.394e-10■■■■■ 40.1
SF3B1O75533 PGAP2-218ENST00000478773 917 ntTSL 317.37■□□□□ 0.374e-7■■■■■ 40.1
SF3B1O75533 PGAP2-223ENST00000489571 879 ntTSL 217.37■□□□□ 0.374e-7■■■■■ 40.1
SF3B1O75533 PGAP2-236ENST00000532535 560 ntTSL 417.37■□□□□ 0.374e-7■■■■■ 40.1
SF3B1O75533 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.374e-7■■■■■ 40.1
SF3B1O75533 CXXC1-215ENST00000591190 1021 ntTSL 317.3■□□□□ 0.364e-7■■■■■ 40.1
SF3B1O75533 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.344e-7■■■■■ 40.1
SF3B1O75533 EPHB4-209ENST00000492878 769 ntTSL 516.95■□□□□ 0.34e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-210ENST00000569124 538 ntTSL 416.93■□□□□ 0.34e-10■■■■■ 40.1
SF3B1O75533 UBB-206ENST00000577958 376 ntTSL 216.91■□□□□ 0.34e-7■■■■■ 40.1
SF3B1O75533 CXXC1-217ENST00000592078 686 ntTSL 216.83■□□□□ 0.284e-7■■■■■ 40.1
SF3B1O75533 PGAP2-220ENST00000483829 813 ntTSL 216.77■□□□□ 0.284e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-208ENST00000450232 595 ntTSL 316.7■□□□□ 0.264e-10■■■■■ 40.1
SF3B1O75533 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.62■□□□□ 0.254e-7■■■■■ 40.1
SF3B1O75533 SEC13-215ENST00000477547 1313 ntTSL 216.49■□□□□ 0.234e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-205ENST00000564529 866 ntTSL 216.42■□□□□ 0.224e-10■■■■■ 40.1
SF3B1O75533 RAI14-225ENST00000514873 542 ntTSL 416.39■□□□□ 0.214e-7■■■■■ 40.1
SF3B1O75533 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.33■□□□□ 0.24e-7■■■■■ 40.1
SF3B1O75533 PGAP2-211ENST00000464590 846 ntTSL 316.33■□□□□ 0.24e-7■■■■■ 40.1
SF3B1O75533 CCNL2-215ENST00000482621 2059 ntTSL 216.25■□□□□ 0.194e-7■■■■■ 40.1
SF3B1O75533 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.12■□□□□ 0.174e-7■■■■■ 40.1
SF3B1O75533 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.164e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-10■■■■■ 40.1
SF3B1O75533 SCAMP2-203ENST00000563663 1787 ntTSL 515.91■□□□□ 0.144e-10■■■■■ 40.1
SF3B1O75533 CXXC1-214ENST00000590901 2562 ntTSL 215.89■□□□□ 0.144e-7■■■■■ 40.1
SF3B1O75533 PGAP2-233ENST00000529944 539 ntTSL 415.72■□□□□ 0.114e-7■■■■■ 40.1
SF3B1O75533 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.56■□□□□ 0.084e-7■■■■■ 40.1
SF3B1O75533 PGAP2-213ENST00000465237 962 ntTSL 1 (best)15.48■□□□□ 0.074e-7■■■■■ 40.1
SF3B1O75533 PGAP2-237ENST00000534498 463 ntTSL 415.46■□□□□ 0.074e-7■■■■■ 40.1
SF3B1O75533 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.44■□□□□ 0.064e-7■■■■■ 40.1
SF3B1O75533 PGAP2-226ENST00000495026 788 ntTSL 515.44■□□□□ 0.064e-7■■■■■ 40.1
SF3B1O75533 PABPC4-216ENST00000492468 2257 ntTSL 215.42■□□□□ 0.064e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-219ENST00000581770 447 ntTSL 215.38■□□□□ 0.054e-10■■■■■ 40.1
SF3B1O75533 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.34■□□□□ 0.054e-7■■■■■ 40.1
SF3B1O75533 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.25■□□□□ 0.034e-7■■■■■ 40.1
SF3B1O75533 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.014e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-235ENST00000584860 1109 ntTSL 314.89□□□□□ -0.034e-10■■■■■ 40.1
SF3B1O75533 USF2-206ENST00000594264 2742 ntTSL 214.86□□□□□ -0.034e-7■■■■■ 40.1
SF3B1O75533 EPHB4-206ENST00000487222 5058 ntTSL 1 (best)14.82□□□□□ -0.044e-7■■■■■ 40.1
SF3B1O75533 GGA1-218ENST00000475445 2614 ntTSL 214.8□□□□□ -0.044e-7■■■■■ 40.1
SF3B1O75533 RAI14-222ENST00000513974 548 ntTSL 414.74□□□□□ -0.054e-7■■■■■ 40.1
SF3B1O75533 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.72□□□□□ -0.054e-7■■■■■ 40.1
SF3B1O75533 PGAP2-229ENST00000525937 654 ntTSL 314.71□□□□□ -0.054e-7■■■■■ 40.1
SF3B1O75533 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.57□□□□□ -0.084e-7■■■■■ 40.1
SF3B1O75533 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.51□□□□□ -0.094e-7■■■■■ 40.1
SF3B1O75533 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.51□□□□□ -0.094e-7■■■■■ 40.1
SF3B1O75533 ATG13-210ENST00000528145 579 ntTSL 314.46□□□□□ -0.094e-7■■■■■ 40.1
SF3B1O75533 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC14.35□□□□□ -0.114e-7■■■■■ 40.1
SF3B1O75533 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.124e-7■■■■■ 40.1
SF3B1O75533 ATF3-208ENST00000465155 1626 ntTSL 214.29□□□□□ -0.124e-7■■■■■ 40.1
SF3B1O75533 UBB-207ENST00000578649 477 ntTSL 514.15□□□□□ -0.154e-7■■■■■ 40.1
SF3B1O75533 CCNL2-209ENST00000471930 846 ntTSL 514.08□□□□□ -0.164e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-214ENST00000580461 909 ntTSL 213.95□□□□□ -0.184e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-206ENST00000414237 513 ntTSL 1 (best)13.9□□□□□ -0.184e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-205ENST00000577738 531 ntTSL 213.89□□□□□ -0.194e-10■■■■■ 40.1
SF3B1O75533 PABPC4-215ENST00000484555 450 ntTSL 513.83□□□□□ -0.24e-10■■■■■ 40.1
SF3B1O75533 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.214e-7■■■■■ 40.1
SF3B1O75533 PGAP2-234ENST00000532017 1513 ntTSL 213.73□□□□□ -0.214e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-212ENST00000569904 858 ntTSL 513.66□□□□□ -0.224e-10■■■■■ 40.1
SF3B1O75533 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.234e-7■■■■■ 40.1
SF3B1O75533 PGAP2-215ENST00000469307 798 ntTSL 313.59□□□□□ -0.234e-7■■■■■ 40.1
SF3B1O75533 PABPC4-206ENST00000437136 876 ntTSL 513.51□□□□□ -0.254e-10■■■■■ 40.1
SF3B1O75533 SEC13-216ENST00000479868 2374 ntTSL 1 (best)13.42□□□□□ -0.264e-7■■■■■ 40.1
SF3B1O75533 GSE1-210ENST00000495192 618 ntTSL 213.28□□□□□ -0.284e-10■■■■■ 40.1
SF3B1O75533 TNKS1BP1-203ENST00000527207 594 ntAPPRIS ALT2 TSL 213.19□□□□□ -0.34e-7■■■■■ 40.1
SF3B1O75533 RAI14-226ENST00000514931 550 ntTSL 213.14□□□□□ -0.314e-7■■■■■ 40.1
SF3B1O75533 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC13.13□□□□□ -0.314e-7■■■■■ 40.1
SF3B1O75533 AP2S1-209ENST00000601498 898 ntTSL 2 BASIC13.11□□□□□ -0.314e-10■■■■■ 40.1
SF3B1O75533 PGAP2-235ENST00000532523 1696 ntTSL 5 BASIC13.07□□□□□ -0.324e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-204ENST00000563829 3162 ntTSL 212.84□□□□□ -0.354e-10■■■■■ 40.1
SF3B1O75533 SCAMP2-202ENST00000562363 638 ntTSL 512.83□□□□□ -0.364e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-226ENST00000582848 591 ntTSL 312.75□□□□□ -0.374e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-236ENST00000584901 1021 ntTSL 212.75□□□□□ -0.374e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-213ENST00000579139 568 ntTSL 412.7□□□□□ -0.384e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC12.51□□□□□ -0.414e-10■■■■■ 40.1
SF3B1O75533 AC004674.1-201ENST00000458400 739 ntBASIC12.38□□□□□ -0.434e-7■■■■■ 40.1
SF3B1O75533 WWP2-201ENST00000356003 4227 ntTSL 2 BASIC12.32□□□□□ -0.444e-7■■■■■ 40.1
SF3B1O75533 RAB5B-208ENST00000550283 665 ntTSL 312.16□□□□□ -0.464e-7■■■■■ 40.1
SF3B1O75533 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC12.15□□□□□ -0.464e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-218ENST00000581544 1444 ntTSL 211.89□□□□□ -0.514e-10■■■■■ 40.1
SF3B1O75533 PGAP2-216ENST00000475884 745 ntTSL 211.88□□□□□ -0.514e-7■■■■■ 40.1
SF3B1O75533 SEC13-214ENST00000476597 614 ntTSL 211.86□□□□□ -0.514e-7■■■■■ 40.1
SF3B1O75533 GSE1-207ENST00000469381 5885 ntTSL 211.79□□□□□ -0.524e-10■■■■■ 40.1
SF3B1O75533 HCFC1-203ENST00000444191 3624 ntTSL 511.78□□□□□ -0.524e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-223ENST00000582169 552 ntTSL 411.61□□□□□ -0.554e-10■■■■■ 40.1
SF3B1O75533 UBB-205ENST00000577640 724 ntTSL 511.56□□□□□ -0.564e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-229ENST00000583802 563 ntTSL 411.53□□□□□ -0.564e-10■■■■■ 40.1
SF3B1O75533 ATF3-211ENST00000613954 2031 ntTSL 5 BASIC11.49□□□□□ -0.574e-7■■■■■ 40.1
SF3B1O75533 PGAP2-217ENST00000477358 1474 ntTSL 511.47□□□□□ -0.574e-7■■■■■ 40.1
SF3B1O75533 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.614e-10■■■■■ 40.1
SF3B1O75533 PGAP2-225ENST00000493547 1772 ntTSL 3 BASIC11.23□□□□□ -0.614e-7■■■■■ 40.1
SF3B1O75533 UBB-202ENST00000395837 1014 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.674e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-215ENST00000580886 562 ntTSL 210.7□□□□□ -0.74e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-231ENST00000584054 716 ntTSL 210.7□□□□□ -0.74e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-217ENST00000581384 642 ntTSL 510.65□□□□□ -0.74e-10■■■■■ 40.1
SF3B1O75533 PGAP2-231ENST00000528216 1815 ntTSL 1 (best)10.64□□□□□ -0.714e-7■■■■■ 40.1
SF3B1O75533 RAI14-206ENST00000504052 630 ntTSL 410.46□□□□□ -0.734e-7■■■■■ 40.1
SF3B1O75533 RAI14-207ENST00000505185 225 ntTSL 210.46□□□□□ -0.734e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-209ENST00000578495 916 ntTSL 510.39□□□□□ -0.754e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-233ENST00000584784 818 ntTSL 510.35□□□□□ -0.754e-10■■■■■ 40.1
Retrieved 100 of 46,956 protein–RNA pairs in 4351.1 ms