RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 NISCHQ9Y2I1 1504 aa26.67■■□□□ 1.86
SEC13-214ENST00000476597 CCDC180Q9P1Z9 1646 aa23.73■■□□□ 1.39
SEC13-214ENST00000476597 ABCC9O60706 1549 aa23.65■■□□□ 1.38
SEC13-214ENST00000476597 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
SEC13-214ENST00000476597 DCAF8L2P0C7V8 631 aa22.52■■□□□ 1.2
SEC13-214ENST00000476597 NACADO15069 1562 aa22.47■■□□□ 1.19
SEC13-214ENST00000476597 MYO15BQ96JP2 1530 aa22.27■■□□□ 1.16
SEC13-214ENST00000476597 PABPN1Q86U42 306 aaKnown RBP eCLIP22.13■■□□□ 1.13
SEC13-214ENST00000476597 ZCCHC6Q5VYS8 1495 aaKnown RBP22.13■■□□□ 1.13
SEC13-214ENST00000476597 DNAJC5BQ9UF47 199 aa22.12■■□□□ 1.13
SEC13-214ENST00000476597 DCAF1Q9Y4B6 1507 aa22.05■■□□□ 1.12
SEC13-214ENST00000476597 UNC13AQ9UPW8 1703 aa21.91■■□□□ 1.1
SEC13-214ENST00000476597 BICRAQ9NZM4 1560 aa21.9■■□□□ 1.1
SEC13-214ENST00000476597 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
SEC13-214ENST00000476597 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.05
SEC13-214ENST00000476597 EIF4G1Q04637 1599 aaKnown RBP21.35■■□□□ 1.01
SEC13-214ENST00000476597 CC2D2AQ9P2K1 1620 aa21.33■■□□□ 1
SEC13-214ENST00000476597 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
SEC13-214ENST00000476597 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
SEC13-214ENST00000476597 ATAD2BQ9ULI0 1458 aa20.76■□□□□ 0.91
SEC13-214ENST00000476597 SMARCA4P51532 1647 aa20.71■□□□□ 0.91
SEC13-214ENST00000476597 BAZ1AQ9NRL2 1556 aaPredicted RBP20.67■□□□□ 0.9
SEC13-214ENST00000476597 SMARCA2P51531 1590 aa20.66■□□□□ 0.9
SEC13-214ENST00000476597 HMGXB3Q12766 1538 aa20.59■□□□□ 0.89
SEC13-214ENST00000476597 MROH2BQ7Z745 1585 aa20.55■□□□□ 0.88
SEC13-214ENST00000476597 PEG3Q9GZU2 1588 aa20.54■□□□□ 0.88
SEC13-214ENST00000476597 BAZ1BQ9UIG0 1483 aaKnown RBP20.53■□□□□ 0.88
SEC13-214ENST00000476597 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
SEC13-214ENST00000476597 NESP48681 1621 aa20.37■□□□□ 0.85
SEC13-214ENST00000476597 CUX2O14529 1486 aa20.3■□□□□ 0.84
SEC13-214ENST00000476597 WIZO95785 1651 aa20.25■□□□□ 0.83
SEC13-214ENST00000476597 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
SEC13-214ENST00000476597 LAMC3Q9Y6N6 1575 aa20.22■□□□□ 0.83
SEC13-214ENST00000476597 CADPSQ9ULU8 1353 aa20.21■□□□□ 0.83
SEC13-214ENST00000476597 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
SEC13-214ENST00000476597 DNAJC5Q9H3Z4 198 aa20.17■□□□□ 0.82
SEC13-214ENST00000476597 THOC2Q8NI27 1593 aaKnown RBP20.04■□□□□ 0.8
SEC13-214ENST00000476597 TOP2AP11388 1531 aaKnown RBP20.03■□□□□ 0.8
SEC13-214ENST00000476597 KIF21AQ7Z4S6 1674 aa19.99■□□□□ 0.79
SEC13-214ENST00000476597 CFTRP13569 1480 aa19.99■□□□□ 0.79
SEC13-214ENST00000476597 MRC2Q9UBG0 1479 aa19.94■□□□□ 0.78
SEC13-214ENST00000476597 FANCD2Q9BXW9 1451 aa19.92■□□□□ 0.78
SEC13-214ENST00000476597 CEP164Q9UPV0 1460 aa19.9■□□□□ 0.78
SEC13-214ENST00000476597 CCDC88BA6NC98 1476 aa19.88■□□□□ 0.77
SEC13-214ENST00000476597 WDR62O43379 1518 aa19.86■□□□□ 0.77
SEC13-214ENST00000476597 URB2Q14146 1524 aaKnown RBP19.73■□□□□ 0.75
SEC13-214ENST00000476597 PRDM2Q13029 1718 aa19.57■□□□□ 0.72
SEC13-214ENST00000476597 TOPBP1Q92547 1522 aa19.56■□□□□ 0.72
SEC13-214ENST00000476597 ABCC8Q09428 1581 aa19.55■□□□□ 0.72
SEC13-214ENST00000476597 SUPT5HO00267 1087 aaKnown RBP19.53■□□□□ 0.72
SEC13-214ENST00000476597 IFT140Q96RY7 1462 aa19.53■□□□□ 0.72
SEC13-214ENST00000476597 OSCARQ8IYS5 282 aa19.5■□□□□ 0.71
SEC13-214ENST00000476597 ZNF608Q9ULD9 1512 aaPredicted RBP19.47■□□□□ 0.71
SEC13-214ENST00000476597 DNMBPQ6XZF7 1577 aa19.46■□□□□ 0.71
SEC13-214ENST00000476597 POLA1P09884 1462 aaPredicted RBP19.37■□□□□ 0.69
SEC13-214ENST00000476597 AQRO60306 1485 aaKnown RBP eCLIP19.35■□□□□ 0.691e-10■■■□□ 18.3
SEC13-214ENST00000476597 SOGA1O94964 1423 aa19.34■□□□□ 0.69
SEC13-214ENST00000476597 TARBP1Q13395 1621 aaKnown RBP19.33■□□□□ 0.68
SEC13-214ENST00000476597 TRIM41Q8WV44 630 aa19.32■□□□□ 0.68
SEC13-214ENST00000476597 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
SEC13-214ENST00000476597 EIF4G3O43432 1585 aaKnown RBP19.28■□□□□ 0.68
SEC13-214ENST00000476597 TDRD9Q8NDG6 1382 aaKnown RBP19.28■□□□□ 0.68
SEC13-214ENST00000476597 CUX1P39880 1505 aa19.27■□□□□ 0.68
SEC13-214ENST00000476597 FGD5Q6ZNL6 1462 aa19.27■□□□□ 0.67
SEC13-214ENST00000476597 FBLN2P98095 1184 aa19.2■□□□□ 0.66
SEC13-214ENST00000476597 WDR97A6NE52 1622 aa19.13■□□□□ 0.65
SEC13-214ENST00000476597 GRIN2BQ13224 1484 aa19.11■□□□□ 0.65
SEC13-214ENST00000476597 CHMP7Q8WUX9 453 aaPredicted RBP19.11■□□□□ 0.65
SEC13-214ENST00000476597 SNAPC4Q5SXM2 1469 aa19.1■□□□□ 0.65
SEC13-214ENST00000476597 ABCA10Q8WWZ4 1543 aa19.09■□□□□ 0.65
SEC13-214ENST00000476597 ARHGEF11O15085 1522 aa19.08■□□□□ 0.64
SEC13-214ENST00000476597 WRNQ14191 1432 aaPredicted RBP eCLIP19.08■□□□□ 0.64
SEC13-214ENST00000476597 GAPVD1Q14C86 1478 aa19.07■□□□□ 0.64
SEC13-214ENST00000476597 MAGI1Q96QZ7 1491 aaPredicted RBP19.07■□□□□ 0.64
SEC13-214ENST00000476597 RIMBP3CA6NJZ7 1639 aa19.07■□□□□ 0.64
SEC13-214ENST00000476597 RIMBP3BA6NNM3 1639 aa19.07■□□□□ 0.64
SEC13-214ENST00000476597 RIMBP3Q9UFD9 1639 aa19.07■□□□□ 0.64
SEC13-214ENST00000476597 CHD1O14646 1710 aa19.05■□□□□ 0.64
SEC13-214ENST00000476597 CYB5RLQ6IPT4 315 aa19.02■□□□□ 0.64
SEC13-214ENST00000476597 SYNJ2O15056 1496 aa19.02■□□□□ 0.63
SEC13-214ENST00000476597 TOP2BQ02880 1626 aa19■□□□□ 0.63
SEC13-214ENST00000476597 SYNJ1O43426 1573 aa18.98■□□□□ 0.63
SEC13-214ENST00000476597 ABCA5Q8WWZ7 1642 aa18.96■□□□□ 0.63
SEC13-214ENST00000476597 BIVM-ERCC5R4GMW8 1640 aa18.96■□□□□ 0.63
SEC13-214ENST00000476597 CLASP1Q7Z460 1538 aa18.94■□□□□ 0.62
SEC13-214ENST00000476597 ARAP1Q96P48 1450 aa18.91■□□□□ 0.62
SEC13-214ENST00000476597 PBRM1Q86U86 1689 aa18.89■□□□□ 0.61
SEC13-214ENST00000476597 GRIN2AQ12879 1464 aa18.85■□□□□ 0.61
SEC13-214ENST00000476597 FHAD1B1AJZ9 1412 aa18.85■□□□□ 0.61
SEC13-214ENST00000476597 ERICH3Q5RHP9 1530 aa18.83■□□□□ 0.6
SEC13-214ENST00000476597 NUP160Q12769 1436 aa18.8■□□□□ 0.6
SEC13-214ENST00000476597 ADAMTS12P58397 1594 aa18.8■□□□□ 0.6
SEC13-214ENST00000476597 CEP170Q5SW79 1584 aa18.73■□□□□ 0.59
SEC13-214ENST00000476597 IGF1RP08069 1367 aa18.73■□□□□ 0.59
SEC13-214ENST00000476597 TRHP20396 242 aaPredicted RBP18.72■□□□□ 0.59
SEC13-214ENST00000476597 KIF27Q86VH2 1401 aa18.71■□□□□ 0.59
SEC13-214ENST00000476597 JPH4Q96JJ6 628 aa18.69■□□□□ 0.58
SEC13-214ENST00000476597 ERCC6L2Q5T890 1561 aa18.66■□□□□ 0.58
SEC13-214ENST00000476597 PRG4Q92954 1404 aaPredicted RBP18.62■□□□□ 0.57
SEC13-214ENST00000476597 SHROOM2Q13796 1616 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms