RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, humanhuman

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5B-208ENST00000550283 NISCHQ9Y2I1 1504 aa27.44■■□□□ 1.98
RAB5B-208ENST00000550283 CCDC180Q9P1Z9 1646 aa24.29■■□□□ 1.48
RAB5B-208ENST00000550283 ABCC9O60706 1549 aa23.9■■□□□ 1.42
RAB5B-208ENST00000550283 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
RAB5B-208ENST00000550283 ZCCHC6Q5VYS8 1495 aaKnown RBP22.87■■□□□ 1.25
RAB5B-208ENST00000550283 RB1CC1Q8TDY2 1594 aa22.85■■□□□ 1.25
RAB5B-208ENST00000550283 NACADO15069 1562 aa22.84■■□□□ 1.25
RAB5B-208ENST00000550283 MYO15BQ96JP2 1530 aa22.68■■□□□ 1.22
RAB5B-208ENST00000550283 DCAF1Q9Y4B6 1507 aa22.62■■□□□ 1.21
RAB5B-208ENST00000550283 DNAJC5BQ9UF47 199 aa22.53■■□□□ 1.2
RAB5B-208ENST00000550283 UNC13AQ9UPW8 1703 aa22.46■■□□□ 1.19
RAB5B-208ENST00000550283 PABPN1Q86U42 306 aaKnown RBP eCLIP22.38■■□□□ 1.17
RAB5B-208ENST00000550283 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.17
RAB5B-208ENST00000550283 SCRIBQ14160 1630 aa22.3■■□□□ 1.16
RAB5B-208ENST00000550283 AEBP2Q6ZN18 517 aaPredicted RBP21.98■■□□□ 1.11
RAB5B-208ENST00000550283 SHROOM4Q9ULL8 1493 aa21.86■■□□□ 1.09
RAB5B-208ENST00000550283 EIF4G1Q04637 1599 aaKnown RBP21.66■■□□□ 1.06
RAB5B-208ENST00000550283 CC2D2AQ9P2K1 1620 aa21.58■■□□□ 1.05
RAB5B-208ENST00000550283 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
RAB5B-208ENST00000550283 CECR2Q9BXF3 1484 aa21.49■■□□□ 1.03
RAB5B-208ENST00000550283 DNAJC5Q9H3Z4 198 aa21.36■■□□□ 1.01
RAB5B-208ENST00000550283 SMARCA4P51532 1647 aa21.29■■□□□ 1
RAB5B-208ENST00000550283 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
RAB5B-208ENST00000550283 BAZ1AQ9NRL2 1556 aaPredicted RBP21.2■□□□□ 0.98
RAB5B-208ENST00000550283 ATAD2BQ9ULI0 1458 aa21.18■□□□□ 0.98
RAB5B-208ENST00000550283 NCAPD3P42695 1498 aa21.13■□□□□ 0.97
RAB5B-208ENST00000550283 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
RAB5B-208ENST00000550283 PEG3Q9GZU2 1588 aa21.05■□□□□ 0.96
RAB5B-208ENST00000550283 HMGXB3Q12766 1538 aa20.99■□□□□ 0.95
RAB5B-208ENST00000550283 WIZO95785 1651 aa20.99■□□□□ 0.95
RAB5B-208ENST00000550283 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
RAB5B-208ENST00000550283 BAZ1BQ9UIG0 1483 aaKnown RBP20.95■□□□□ 0.94
RAB5B-208ENST00000550283 NESP48681 1621 aa20.75■□□□□ 0.91
RAB5B-208ENST00000550283 TOP2AP11388 1531 aaKnown RBP20.68■□□□□ 0.9
RAB5B-208ENST00000550283 LAMC3Q9Y6N6 1575 aa20.51■□□□□ 0.87
RAB5B-208ENST00000550283 CADPSQ9ULU8 1353 aa20.51■□□□□ 0.87
RAB5B-208ENST00000550283 CCDC88BA6NC98 1476 aa20.5■□□□□ 0.87
RAB5B-208ENST00000550283 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
RAB5B-208ENST00000550283 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
RAB5B-208ENST00000550283 KIF21AQ7Z4S6 1674 aa20.42■□□□□ 0.86
RAB5B-208ENST00000550283 CFTRP13569 1480 aa20.41■□□□□ 0.86
RAB5B-208ENST00000550283 THOC2Q8NI27 1593 aaKnown RBP20.36■□□□□ 0.85
RAB5B-208ENST00000550283 PDS5BQ9NTI5 1447 aa20.36■□□□□ 0.85
RAB5B-208ENST00000550283 FANCD2Q9BXW9 1451 aa20.3■□□□□ 0.84
RAB5B-208ENST00000550283 CUX2O14529 1486 aa20.24■□□□□ 0.83
RAB5B-208ENST00000550283 CEP164Q9UPV0 1460 aa20.23■□□□□ 0.83
RAB5B-208ENST00000550283 MRC2Q9UBG0 1479 aa20.21■□□□□ 0.83
RAB5B-208ENST00000550283 PRDM2Q13029 1718 aa20.18■□□□□ 0.82
RAB5B-208ENST00000550283 WDR62O43379 1518 aa20.17■□□□□ 0.82
RAB5B-208ENST00000550283 URB2Q14146 1524 aaKnown RBP20.17■□□□□ 0.82
RAB5B-208ENST00000550283 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
RAB5B-208ENST00000550283 TOPBP1Q92547 1522 aa19.99■□□□□ 0.79
RAB5B-208ENST00000550283 DNMBPQ6XZF7 1577 aa19.92■□□□□ 0.78
RAB5B-208ENST00000550283 CUX1P39880 1505 aa19.9■□□□□ 0.78
RAB5B-208ENST00000550283 ZNF608Q9ULD9 1512 aaPredicted RBP19.85■□□□□ 0.77
RAB5B-208ENST00000550283 POLA1P09884 1462 aaPredicted RBP19.83■□□□□ 0.76
RAB5B-208ENST00000550283 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
RAB5B-208ENST00000550283 RAD54L2Q9Y4B4 1467 aa19.8■□□□□ 0.76
RAB5B-208ENST00000550283 IFT140Q96RY7 1462 aa19.79■□□□□ 0.76
RAB5B-208ENST00000550283 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
RAB5B-208ENST00000550283 FGD5Q6ZNL6 1462 aa19.79■□□□□ 0.76
RAB5B-208ENST00000550283 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
RAB5B-208ENST00000550283 SOGA1O94964 1423 aa19.71■□□□□ 0.75
RAB5B-208ENST00000550283 AQRO60306 1485 aaKnown RBP eCLIP19.7■□□□□ 0.741e-12■■■■□ 20.7
RAB5B-208ENST00000550283 EIF4G3O43432 1585 aaKnown RBP19.7■□□□□ 0.74
RAB5B-208ENST00000550283 WRNQ14191 1432 aaPredicted RBP eCLIP19.69■□□□□ 0.74
RAB5B-208ENST00000550283 TDRD9Q8NDG6 1382 aaKnown RBP19.67■□□□□ 0.74
RAB5B-208ENST00000550283 TOP2BQ02880 1626 aa19.65■□□□□ 0.74
RAB5B-208ENST00000550283 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
RAB5B-208ENST00000550283 WDR97A6NE52 1622 aa19.62■□□□□ 0.73
RAB5B-208ENST00000550283 ABCA10Q8WWZ4 1543 aa19.56■□□□□ 0.72
RAB5B-208ENST00000550283 ABCA5Q8WWZ7 1642 aa19.51■□□□□ 0.71
RAB5B-208ENST00000550283 SNAPC4Q5SXM2 1469 aa19.49■□□□□ 0.71
RAB5B-208ENST00000550283 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
RAB5B-208ENST00000550283 GRIN2BQ13224 1484 aa19.45■□□□□ 0.7
RAB5B-208ENST00000550283 PBRM1Q86U86 1689 aa19.44■□□□□ 0.7
RAB5B-208ENST00000550283 CHD1O14646 1710 aa19.44■□□□□ 0.7
RAB5B-208ENST00000550283 OSCARQ8IYS5 282 aa19.42■□□□□ 0.7
RAB5B-208ENST00000550283 FBLN2P98095 1184 aa19.38■□□□□ 0.69
RAB5B-208ENST00000550283 MAGI1Q96QZ7 1491 aaPredicted RBP19.37■□□□□ 0.69
RAB5B-208ENST00000550283 SYNJ2O15056 1496 aa19.33■□□□□ 0.68
RAB5B-208ENST00000550283 ADAMTS12P58397 1594 aa19.32■□□□□ 0.68
RAB5B-208ENST00000550283 CHMP7Q8WUX9 453 aaPredicted RBP19.29■□□□□ 0.68
RAB5B-208ENST00000550283 ERICH3Q5RHP9 1530 aa19.28■□□□□ 0.68
RAB5B-208ENST00000550283 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
RAB5B-208ENST00000550283 IGF1RP08069 1367 aa19.25■□□□□ 0.67
RAB5B-208ENST00000550283 CLASP1Q7Z460 1538 aa19.25■□□□□ 0.67
RAB5B-208ENST00000550283 FHAD1B1AJZ9 1412 aa19.24■□□□□ 0.67
RAB5B-208ENST00000550283 KIF27Q86VH2 1401 aa19.24■□□□□ 0.67
RAB5B-208ENST00000550283 GRIN2AQ12879 1464 aa19.23■□□□□ 0.67
RAB5B-208ENST00000550283 CEP170Q5SW79 1584 aa19.2■□□□□ 0.66
RAB5B-208ENST00000550283 RIMBP3CA6NJZ7 1639 aa19.19■□□□□ 0.66
RAB5B-208ENST00000550283 RIMBP3BA6NNM3 1639 aa19.19■□□□□ 0.66
RAB5B-208ENST00000550283 RIMBP3Q9UFD9 1639 aa19.19■□□□□ 0.66
RAB5B-208ENST00000550283 ARHGEF11O15085 1522 aa19.18■□□□□ 0.66
RAB5B-208ENST00000550283 NUP160Q12769 1436 aa19.17■□□□□ 0.66
RAB5B-208ENST00000550283 CARMIL1Q5VZK9 1371 aa19.09■□□□□ 0.65
RAB5B-208ENST00000550283 ERCC6L2Q5T890 1561 aa19.09■□□□□ 0.65
RAB5B-208ENST00000550283 CUL7Q14999 1698 aa19.08■□□□□ 0.65
RAB5B-208ENST00000550283 ARAP1Q96P48 1450 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms