RNA–Protein interactions for RNA: ENST00000341567.8

TMEM248-201, Transcript of transmembrane protein 248, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM248, Length 4,229 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-201ENST00000341567 NISCHQ9Y2I1 1504 aa24.91■■□□□ 1.58
TMEM248-201ENST00000341567 DCAF8L2P0C7V8 631 aa24.38■■□□□ 1.49
TMEM248-201ENST00000341567 SHROOM4Q9ULL8 1493 aa23.39■■□□□ 1.33
TMEM248-201ENST00000341567 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
TMEM248-201ENST00000341567 EHMT2Q96KQ7 1210 aa22.52■■□□□ 1.2
TMEM248-201ENST00000341567 FAM9AQ8IZU1 332 aaPredicted RBP21.99■■□□□ 1.11
TMEM248-201ENST00000341567 PCGF6Q9BYE7 350 aa21.76■■□□□ 1.07
TMEM248-201ENST00000341567 TTBK1Q5TCY1 1321 aaPredicted RBP21.64■■□□□ 1.05
TMEM248-201ENST00000341567 CCDC180Q9P1Z9 1646 aa21.58■■□□□ 1.05
TMEM248-201ENST00000341567 TRIM41Q8WV44 630 aa21.42■■□□□ 1.02
TMEM248-201ENST00000341567 RANGAP1P46060 587 aaPredicted RBP21.4■■□□□ 1.02
TMEM248-201ENST00000341567 PPARGC1BQ86YN6 1023 aaKnown RBP21.25■□□□□ 0.99
TMEM248-201ENST00000341567 LOC105371045A0A1W2PR82 267 aa21.25■□□□□ 0.99
TMEM248-201ENST00000341567 CHIC1Q5VXU3 224 aa21.18■□□□□ 0.98
TMEM248-201ENST00000341567 HRCP23327 699 aa21.07■□□□□ 0.96
TMEM248-201ENST00000341567 ABCC9O60706 1549 aa21.07■□□□□ 0.96
TMEM248-201ENST00000341567 APLP2Q06481 763 aa20.99■□□□□ 0.95
TMEM248-201ENST00000341567 UBTFP17480 764 aaKnown RBP20.98■□□□□ 0.95
TMEM248-201ENST00000341567 PABPN1Q86U42 306 aaKnown RBP eCLIP20.92■□□□□ 0.94
TMEM248-201ENST00000341567 ZCCHC6Q5VYS8 1495 aaKnown RBP20.86■□□□□ 0.93
TMEM248-201ENST00000341567 ATP1B4Q9UN42 357 aaPredicted RBP20.79■□□□□ 0.92
TMEM248-201ENST00000341567 CCER1Q8TC90 406 aaPredicted RBP20.73■□□□□ 0.91
TMEM248-201ENST00000341567 ZEB1P37275 1124 aaPredicted RBP20.67■□□□□ 0.9
TMEM248-201ENST00000341567 TRIM26Q12899 539 aaPredicted RBP20.61■□□□□ 0.89
TMEM248-201ENST00000341567 PELP1Q8IZL8 1130 aaKnown RBP20.58■□□□□ 0.88
TMEM248-201ENST00000341567 CENPBP07199 599 aaPredicted RBP20.55■□□□□ 0.88
TMEM248-201ENST00000341567 YTHDC1Q96MU7 727 aaKnown RBP20.51■□□□□ 0.87
TMEM248-201ENST00000341567 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
TMEM248-201ENST00000341567 ITGAEP38570 1179 aa20.39■□□□□ 0.85
TMEM248-201ENST00000341567 HNRNPUL2Q1KMD3 747 aaKnown RBP20.35■□□□□ 0.85
TMEM248-201ENST00000341567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.29■□□□□ 0.84
TMEM248-201ENST00000341567 SCRIBQ14160 1630 aa20.26■□□□□ 0.83
TMEM248-201ENST00000341567 NACADO15069 1562 aa20.25■□□□□ 0.83
TMEM248-201ENST00000341567 MYO15BQ96JP2 1530 aa20.22■□□□□ 0.83
TMEM248-201ENST00000341567 RB1CC1Q8TDY2 1594 aa20.14■□□□□ 0.82
TMEM248-201ENST00000341567 DIEXFQ68CQ4 756 aaKnown RBP19.97■□□□□ 0.79
TMEM248-201ENST00000341567 GTF3C3Q9Y5Q9 886 aa19.91■□□□□ 0.78
TMEM248-201ENST00000341567 CSRNP3Q8WYN3 585 aa19.88■□□□□ 0.77
TMEM248-201ENST00000341567 MYT1Q01538 1121 aa19.88■□□□□ 0.77
TMEM248-201ENST00000341567 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
TMEM248-201ENST00000341567 CNGB1Q14028 1251 aaPredicted RBP19.82■□□□□ 0.76
TMEM248-201ENST00000341567 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
TMEM248-201ENST00000341567 FAM50AQ14320 339 aaKnown RBP19.78■□□□□ 0.76
TMEM248-201ENST00000341567 ARID3CA6NKF2 412 aa19.77■□□□□ 0.75
TMEM248-201ENST00000341567 ERICH6Q7L0X2 663 aa19.75■□□□□ 0.75
TMEM248-201ENST00000341567 POLR3GLQ9BT43 218 aa19.68■□□□□ 0.74
TMEM248-201ENST00000341567 CECR2Q9BXF3 1484 aa19.67■□□□□ 0.74
TMEM248-201ENST00000341567 ACIN1Q9UKV3 1341 aaKnown RBP19.67■□□□□ 0.74
TMEM248-201ENST00000341567 NEFLP07196 543 aa19.67■□□□□ 0.74
TMEM248-201ENST00000341567 FBLN2P98095 1184 aa19.66■□□□□ 0.74
TMEM248-201ENST00000341567 SCAF1Q9H7N4 1312 aaKnown RBP19.66■□□□□ 0.74
TMEM248-201ENST00000341567 NEUROD1Q13562 356 aa19.63■□□□□ 0.73
TMEM248-201ENST00000341567 MYT1LQ9UL68 1186 aa19.57■□□□□ 0.72
TMEM248-201ENST00000341567 BCANQ96GW7 911 aa19.46■□□□□ 0.71
TMEM248-201ENST00000341567 TRIM52Q96A61 297 aa19.46■□□□□ 0.71
TMEM248-201ENST00000341567 ZNF316A6NFI3 1004 aaPredicted RBP19.43■□□□□ 0.7
TMEM248-201ENST00000341567 UNC13AQ9UPW8 1703 aa19.39■□□□□ 0.7
TMEM248-201ENST00000341567 ZNF326Q5BKZ1 582 aaKnown RBP19.31■□□□□ 0.68
TMEM248-201ENST00000341567 MROH2BQ7Z745 1585 aa19.31■□□□□ 0.68
TMEM248-201ENST00000341567 BAZ1AQ9NRL2 1556 aaPredicted RBP19.3■□□□□ 0.68
TMEM248-201ENST00000341567 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
TMEM248-201ENST00000341567 ZNF777Q9ULD5 760 aaPredicted RBP19.24■□□□□ 0.67
TMEM248-201ENST00000341567 SOGA1O94964 1423 aa19.2■□□□□ 0.66
TMEM248-201ENST00000341567 WRNQ14191 1432 aaPredicted RBP eCLIP19.2■□□□□ 0.66
TMEM248-201ENST00000341567 CHIC2Q9UKJ5 165 aa19.18■□□□□ 0.66
TMEM248-201ENST00000341567 CEP162Q5TB80 1403 aa19.18■□□□□ 0.66
TMEM248-201ENST00000341567 CLIP1P30622 1438 aa19.17■□□□□ 0.66
TMEM248-201ENST00000341567 BAZ1BQ9UIG0 1483 aaKnown RBP19.15■□□□□ 0.66
TMEM248-201ENST00000341567 HIRIP3Q9BW71 556 aaPredicted RBP19.12■□□□□ 0.65
TMEM248-201ENST00000341567 MIER1Q8N108 512 aa19.12■□□□□ 0.65
TMEM248-201ENST00000341567 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
TMEM248-201ENST00000341567 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
TMEM248-201ENST00000341567 WIZO95785 1651 aa19.05■□□□□ 0.64
TMEM248-201ENST00000341567 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
TMEM248-201ENST00000341567 SLC4A1APQ9BWU0 796 aaKnown RBP19.05■□□□□ 0.64
TMEM248-201ENST00000341567 DDX10Q13206 875 aaKnown RBP18.98■□□□□ 0.63
TMEM248-201ENST00000341567 GOLGA3Q08378 1498 aa18.97■□□□□ 0.63
TMEM248-201ENST00000341567 TNIKQ9UKE5 1360 aa18.94■□□□□ 0.62
TMEM248-201ENST00000341567 FKBP8Q14318 412 aa18.93■□□□□ 0.62
TMEM248-201ENST00000341567 ANP32CO43423 234 aa18.92■□□□□ 0.62
TMEM248-201ENST00000341567 RRP7BPQ9NSQ0 103 aa18.92■□□□□ 0.62
TMEM248-201ENST00000341567 SMARCA2P51531 1590 aa18.91■□□□□ 0.62
TMEM248-201ENST00000341567 CHMP7Q8WUX9 453 aaPredicted RBP18.89■□□□□ 0.61
TMEM248-201ENST00000341567 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
TMEM248-201ENST00000341567 ATAD2BQ9ULI0 1458 aa18.88■□□□□ 0.61
TMEM248-201ENST00000341567 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
TMEM248-201ENST00000341567 MTUS2Q5JR59 1369 aa18.88■□□□□ 0.61
TMEM248-201ENST00000341567 EEA1Q15075 1411 aa18.85■□□□□ 0.61
TMEM248-201ENST00000341567 CDK11AQ9UQ88 783 aaPredicted RBP18.84■□□□□ 0.61
TMEM248-201ENST00000341567 KANK4Q5T7N3 995 aaPredicted RBP18.84■□□□□ 0.61
TMEM248-201ENST00000341567 KIF27Q86VH2 1401 aa18.84■□□□□ 0.61
TMEM248-201ENST00000341567 RUSC2Q8N2Y8 1516 aa18.83■□□□□ 0.61
TMEM248-201ENST00000341567 TONSLQ96HA7 1378 aa18.81■□□□□ 0.6
TMEM248-201ENST00000341567 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.6
TMEM248-201ENST00000341567 CEP164Q9UPV0 1460 aa18.81■□□□□ 0.6
TMEM248-201ENST00000341567 SIN3AQ96ST3 1273 aa18.79■□□□□ 0.6
TMEM248-201ENST00000341567 SENP3-EIF4A1A0A087X0R7 540 aa18.77■□□□□ 0.6
TMEM248-201ENST00000341567 RTL5Q5HYW3 569 aaPredicted RBP18.76■□□□□ 0.59
TMEM248-201ENST00000341567 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
TMEM248-201ENST00000341567 CUX2O14529 1486 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms