RNA–Protein interactions for RNA: ENST00000613954.4

ATF3-211, Transcript of activating transcription factor 3, humanhuman

TSL 5 BASIC

Gene ATF3, Length 2,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-211ENST00000613954 NISCHQ9Y2I1 1504 aa24.13■■□□□ 1.45
ATF3-211ENST00000613954 CCDC180Q9P1Z9 1646 aa21■□□□□ 0.95
ATF3-211ENST00000613954 ZCCHC6Q5VYS8 1495 aaKnown RBP20.29■□□□□ 0.84
ATF3-211ENST00000613954 DCAF1Q9Y4B6 1507 aa19.96■□□□□ 0.79
ATF3-211ENST00000613954 DCAF8L2P0C7V8 631 aa19.87■□□□□ 0.77
ATF3-211ENST00000613954 ABCC9O60706 1549 aa19.76■□□□□ 0.75
ATF3-211ENST00000613954 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
ATF3-211ENST00000613954 MYO15BQ96JP2 1530 aa19.69■□□□□ 0.74
ATF3-211ENST00000613954 NACADO15069 1562 aa19.54■□□□□ 0.72
ATF3-211ENST00000613954 RB1CC1Q8TDY2 1594 aa19.35■□□□□ 0.69
ATF3-211ENST00000613954 SCRIBQ14160 1630 aa19.32■□□□□ 0.68
ATF3-211ENST00000613954 SUPT5HO00267 1087 aaKnown RBP19.03■□□□□ 0.64
ATF3-211ENST00000613954 UNC13AQ9UPW8 1703 aa18.93■□□□□ 0.62
ATF3-211ENST00000613954 BICRAQ9NZM4 1560 aa18.75■□□□□ 0.59
ATF3-211ENST00000613954 RSF1Q96T23 1441 aaPredicted RBP18.75■□□□□ 0.59
ATF3-211ENST00000613954 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
ATF3-211ENST00000613954 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.58
ATF3-211ENST00000613954 MROH2BQ7Z745 1585 aa18.63■□□□□ 0.57
ATF3-211ENST00000613954 BAZ1AQ9NRL2 1556 aaPredicted RBP18.62■□□□□ 0.57
ATF3-211ENST00000613954 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
ATF3-211ENST00000613954 HRCP23327 699 aa18.52■□□□□ 0.56
ATF3-211ENST00000613954 CHIC1Q5VXU3 224 aa18.52■□□□□ 0.56
ATF3-211ENST00000613954 WIZO95785 1651 aa18.49■□□□□ 0.55
ATF3-211ENST00000613954 TOP2AP11388 1531 aaKnown RBP18.31■□□□□ 0.52
ATF3-211ENST00000613954 PEG3Q9GZU2 1588 aa18.3■□□□□ 0.52
ATF3-211ENST00000613954 PCGF6Q9BYE7 350 aa18.22■□□□□ 0.51
ATF3-211ENST00000613954 SMARCA2P51531 1590 aa18.2■□□□□ 0.5
ATF3-211ENST00000613954 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
ATF3-211ENST00000613954 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
ATF3-211ENST00000613954 CCDC88BA6NC98 1476 aa18.12■□□□□ 0.49
ATF3-211ENST00000613954 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
ATF3-211ENST00000613954 NCAPD3P42695 1498 aa18.03■□□□□ 0.48
ATF3-211ENST00000613954 HMGXB3Q12766 1538 aa18.02■□□□□ 0.48
ATF3-211ENST00000613954 TRIM26Q12899 539 aaPredicted RBP17.92■□□□□ 0.46
ATF3-211ENST00000613954 PPARGC1BQ86YN6 1023 aaKnown RBP17.92■□□□□ 0.46
ATF3-211ENST00000613954 TRIM41Q8WV44 630 aa17.9■□□□□ 0.46
ATF3-211ENST00000613954 LOC105371045A0A1W2PR82 267 aa17.89■□□□□ 0.45
ATF3-211ENST00000613954 CC2D2AQ9P2K1 1620 aa17.88■□□□□ 0.45
ATF3-211ENST00000613954 ZEB1P37275 1124 aaPredicted RBP17.77■□□□□ 0.44
ATF3-211ENST00000613954 ABCC8Q09428 1581 aa17.76■□□□□ 0.43
ATF3-211ENST00000613954 CFTRP13569 1480 aa17.66■□□□□ 0.42
ATF3-211ENST00000613954 WRNQ14191 1432 aaPredicted RBP eCLIP17.65■□□□□ 0.42
ATF3-211ENST00000613954 CADPSQ9ULU8 1353 aa17.57■□□□□ 0.4
ATF3-211ENST00000613954 PRDM2Q13029 1718 aa17.57■□□□□ 0.4
ATF3-211ENST00000613954 SYNJ1O43426 1573 aa17.56■□□□□ 0.4
ATF3-211ENST00000613954 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
ATF3-211ENST00000613954 TOP2BQ02880 1626 aa17.5■□□□□ 0.39
ATF3-211ENST00000613954 BIVM-ERCC5R4GMW8 1640 aa17.48■□□□□ 0.39
ATF3-211ENST00000613954 PELP1Q8IZL8 1130 aaKnown RBP17.47■□□□□ 0.39
ATF3-211ENST00000613954 EEA1Q15075 1411 aa17.47■□□□□ 0.39
ATF3-211ENST00000613954 SOGA1O94964 1423 aa17.45■□□□□ 0.38
ATF3-211ENST00000613954 CUX1P39880 1505 aa17.42■□□□□ 0.38
ATF3-211ENST00000613954 LAMC3Q9Y6N6 1575 aa17.4■□□□□ 0.38
ATF3-211ENST00000613954 FANCD2Q9BXW9 1451 aa17.38■□□□□ 0.37
ATF3-211ENST00000613954 NESP48681 1621 aa17.37■□□□□ 0.37
ATF3-211ENST00000613954 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
ATF3-211ENST00000613954 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
ATF3-211ENST00000613954 CSRNP3Q8WYN3 585 aa17.34■□□□□ 0.37
ATF3-211ENST00000613954 EHMT2Q96KQ7 1210 aa17.3■□□□□ 0.36
ATF3-211ENST00000613954 PDS5BQ9NTI5 1447 aa17.27■□□□□ 0.35
ATF3-211ENST00000613954 CEP164Q9UPV0 1460 aa17.26■□□□□ 0.35
ATF3-211ENST00000613954 DNMBPQ6XZF7 1577 aa17.25■□□□□ 0.35
ATF3-211ENST00000613954 KIF21BO75037 1637 aa17.22■□□□□ 0.35
ATF3-211ENST00000613954 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
ATF3-211ENST00000613954 FGD5Q6ZNL6 1462 aa17.22■□□□□ 0.35
ATF3-211ENST00000613954 TOPBP1Q92547 1522 aa17.2■□□□□ 0.34
ATF3-211ENST00000613954 KIF27Q86VH2 1401 aa17.2■□□□□ 0.34
ATF3-211ENST00000613954 SCAF1Q9H7N4 1312 aaKnown RBP17.19■□□□□ 0.34
ATF3-211ENST00000613954 TNIKQ9UKE5 1360 aa17.18■□□□□ 0.34
ATF3-211ENST00000613954 KIF21AQ7Z4S6 1674 aa17.16■□□□□ 0.34
ATF3-211ENST00000613954 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
ATF3-211ENST00000613954 CUX2O14529 1486 aa17.13■□□□□ 0.33
ATF3-211ENST00000613954 UBTFP17480 764 aaKnown RBP17.13■□□□□ 0.33
ATF3-211ENST00000613954 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
ATF3-211ENST00000613954 PRXQ9BXM0 1461 aa17.1■□□□□ 0.33
ATF3-211ENST00000613954 ERICH3Q5RHP9 1530 aa17.09■□□□□ 0.33
ATF3-211ENST00000613954 CEP162Q5TB80 1403 aa17.09■□□□□ 0.33
ATF3-211ENST00000613954 RAPGEF2Q9Y4G8 1499 aa17.09■□□□□ 0.33
ATF3-211ENST00000613954 ABCA10Q8WWZ4 1543 aa17.08■□□□□ 0.32
ATF3-211ENST00000613954 MYT1Q01538 1121 aa17.08■□□□□ 0.32
ATF3-211ENST00000613954 CCER1Q8TC90 406 aaPredicted RBP17.07■□□□□ 0.32
ATF3-211ENST00000613954 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
ATF3-211ENST00000613954 MRC2Q9UBG0 1479 aa17.05■□□□□ 0.32
ATF3-211ENST00000613954 IGF1RP08069 1367 aa17.03■□□□□ 0.32
ATF3-211ENST00000613954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.01■□□□□ 0.31
ATF3-211ENST00000613954 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
ATF3-211ENST00000613954 WDR97A6NE52 1622 aa17■□□□□ 0.31
ATF3-211ENST00000613954 CENPBP07199 599 aaPredicted RBP16.95■□□□□ 0.3
ATF3-211ENST00000613954 CARMIL1Q5VZK9 1371 aa16.95■□□□□ 0.3
ATF3-211ENST00000613954 WDR62O43379 1518 aa16.95■□□□□ 0.3
ATF3-211ENST00000613954 ERCC6Q03468 1493 aa16.94■□□□□ 0.3
ATF3-211ENST00000613954 CLIP1P30622 1438 aa16.94■□□□□ 0.3
ATF3-211ENST00000613954 TARBP1Q13395 1621 aaKnown RBP16.93■□□□□ 0.3
ATF3-211ENST00000613954 ABCA5Q8WWZ7 1642 aa16.93■□□□□ 0.3
ATF3-211ENST00000613954 DIEXFQ68CQ4 756 aaKnown RBP16.92■□□□□ 0.3
ATF3-211ENST00000613954 CUL7Q14999 1698 aa16.9■□□□□ 0.3
ATF3-211ENST00000613954 GAPVD1Q14C86 1478 aa16.89■□□□□ 0.29
ATF3-211ENST00000613954 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
ATF3-211ENST00000613954 NEUROD1Q13562 356 aa16.87■□□□□ 0.29
ATF3-211ENST00000613954 THOC2Q8NI27 1593 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms