RNA–Protein interactions for RNA: ENST00000444191.5

HCFC1-203, Transcript of host cell factor C1, humanhuman

TSL 5

Gene HCFC1, Length 3,624 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-203ENST00000444191 NISCHQ9Y2I1 1504 aa21.72■■□□□ 1.07
HCFC1-203ENST00000444191 SHROOM4Q9ULL8 1493 aa20.23■□□□□ 0.83
HCFC1-203ENST00000444191 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
HCFC1-203ENST00000444191 DCAF8L2P0C7V8 631 aa20.04■□□□□ 0.8
HCFC1-203ENST00000444191 PCGF6Q9BYE7 350 aa19.34■□□□□ 0.69
HCFC1-203ENST00000444191 EHMT2Q96KQ7 1210 aa19.18■□□□□ 0.66
HCFC1-203ENST00000444191 PPARGC1BQ86YN6 1023 aaKnown RBP19■□□□□ 0.63
HCFC1-203ENST00000444191 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
HCFC1-203ENST00000444191 HRCP23327 699 aa18.93■□□□□ 0.62
HCFC1-203ENST00000444191 LOC105371045A0A1W2PR82 267 aa18.9■□□□□ 0.62
HCFC1-203ENST00000444191 FAM9AQ8IZU1 332 aaPredicted RBP18.86■□□□□ 0.61
HCFC1-203ENST00000444191 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
HCFC1-203ENST00000444191 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
HCFC1-203ENST00000444191 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
HCFC1-203ENST00000444191 TRIM26Q12899 539 aaPredicted RBP18.39■□□□□ 0.53
HCFC1-203ENST00000444191 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
HCFC1-203ENST00000444191 PELP1Q8IZL8 1130 aaKnown RBP18.15■□□□□ 0.5
HCFC1-203ENST00000444191 CCER1Q8TC90 406 aaPredicted RBP18.13■□□□□ 0.49
HCFC1-203ENST00000444191 CCDC180Q9P1Z9 1646 aa18.13■□□□□ 0.49
HCFC1-203ENST00000444191 ZEB1P37275 1124 aaPredicted RBP18.09■□□□□ 0.49
HCFC1-203ENST00000444191 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.06■□□□□ 0.48
HCFC1-203ENST00000444191 RANGAP1P46060 587 aaPredicted RBP17.97■□□□□ 0.47
HCFC1-203ENST00000444191 YTHDC1Q96MU7 727 aaKnown RBP17.91■□□□□ 0.46
HCFC1-203ENST00000444191 DCAF1Q9Y4B6 1507 aa17.89■□□□□ 0.45
HCFC1-203ENST00000444191 UBTFP17480 764 aaKnown RBP17.81■□□□□ 0.44
HCFC1-203ENST00000444191 SCAF1Q9H7N4 1312 aaKnown RBP17.77■□□□□ 0.43
HCFC1-203ENST00000444191 CENPBP07199 599 aaPredicted RBP17.71■□□□□ 0.43
HCFC1-203ENST00000444191 DIEXFQ68CQ4 756 aaKnown RBP17.67■□□□□ 0.42
HCFC1-203ENST00000444191 HNRNPUL2Q1KMD3 747 aaKnown RBP17.65■□□□□ 0.42
HCFC1-203ENST00000444191 SCRIBQ14160 1630 aa17.63■□□□□ 0.41
HCFC1-203ENST00000444191 GTF3C3Q9Y5Q9 886 aa17.63■□□□□ 0.41
HCFC1-203ENST00000444191 APLP2Q06481 763 aa17.59■□□□□ 0.41
HCFC1-203ENST00000444191 ABCC9O60706 1549 aa17.58■□□□□ 0.41
HCFC1-203ENST00000444191 NEUROD1Q13562 356 aa17.57■□□□□ 0.4
HCFC1-203ENST00000444191 RSF1Q96T23 1441 aaPredicted RBP17.55■□□□□ 0.4
HCFC1-203ENST00000444191 ACIN1Q9UKV3 1341 aaKnown RBP17.51■□□□□ 0.39
HCFC1-203ENST00000444191 MYT1Q01538 1121 aa17.45■□□□□ 0.38
HCFC1-203ENST00000444191 ITGAEP38570 1179 aa17.35■□□□□ 0.37
HCFC1-203ENST00000444191 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.37
HCFC1-203ENST00000444191 RB1CC1Q8TDY2 1594 aa17.35■□□□□ 0.37
HCFC1-203ENST00000444191 CECR2Q9BXF3 1484 aa17.31■□□□□ 0.36
HCFC1-203ENST00000444191 ZNF316A6NFI3 1004 aaPredicted RBP17.27■□□□□ 0.36
HCFC1-203ENST00000444191 CSRNP3Q8WYN3 585 aa17.22■□□□□ 0.35
HCFC1-203ENST00000444191 ATP1B4Q9UN42 357 aaPredicted RBP17.21■□□□□ 0.35
HCFC1-203ENST00000444191 MIER1Q8N108 512 aa17.18■□□□□ 0.34
HCFC1-203ENST00000444191 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
HCFC1-203ENST00000444191 CEP162Q5TB80 1403 aa17.06■□□□□ 0.32
HCFC1-203ENST00000444191 BCANQ96GW7 911 aa17.04■□□□□ 0.32
HCFC1-203ENST00000444191 SOGA1O94964 1423 aa17.03■□□□□ 0.32
HCFC1-203ENST00000444191 ABCC8Q09428 1581 aa17.01■□□□□ 0.31
HCFC1-203ENST00000444191 CCDC88BA6NC98 1476 aa16.97■□□□□ 0.31
HCFC1-203ENST00000444191 WIZO95785 1651 aa16.97■□□□□ 0.31
HCFC1-203ENST00000444191 RUSC2Q8N2Y8 1516 aa16.86■□□□□ 0.29
HCFC1-203ENST00000444191 FAM50AQ14320 339 aaKnown RBP16.82■□□□□ 0.28
HCFC1-203ENST00000444191 TNIKQ9UKE5 1360 aa16.82■□□□□ 0.28
HCFC1-203ENST00000444191 HIRIP3Q9BW71 556 aaPredicted RBP16.82■□□□□ 0.28
HCFC1-203ENST00000444191 CLIP1P30622 1438 aa16.8■□□□□ 0.28
HCFC1-203ENST00000444191 CNGB1Q14028 1251 aaPredicted RBP16.8■□□□□ 0.28
HCFC1-203ENST00000444191 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
HCFC1-203ENST00000444191 NEFLP07196 543 aa16.77■□□□□ 0.28
HCFC1-203ENST00000444191 NACADO15069 1562 aa16.75■□□□□ 0.27
HCFC1-203ENST00000444191 DDX10Q13206 875 aaKnown RBP16.72■□□□□ 0.27
HCFC1-203ENST00000444191 GOLGA3Q08378 1498 aa16.71■□□□□ 0.27
HCFC1-203ENST00000444191 WRNQ14191 1432 aaPredicted RBP eCLIP16.7■□□□□ 0.26
HCFC1-203ENST00000444191 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
HCFC1-203ENST00000444191 FKBP8Q14318 412 aa16.66■□□□□ 0.26
HCFC1-203ENST00000444191 TRIM52Q96A61 297 aa16.65■□□□□ 0.26
HCFC1-203ENST00000444191 KANK4Q5T7N3 995 aaPredicted RBP16.65■□□□□ 0.26
HCFC1-203ENST00000444191 KCNH8Q96L42 1107 aa16.62■□□□□ 0.25
HCFC1-203ENST00000444191 SUPT16HQ9Y5B9 1047 aaKnown RBP16.61■□□□□ 0.25
HCFC1-203ENST00000444191 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
HCFC1-203ENST00000444191 ERICH6Q7L0X2 663 aa16.58■□□□□ 0.25
HCFC1-203ENST00000444191 EEA1Q15075 1411 aa16.57■□□□□ 0.24
HCFC1-203ENST00000444191 SIN3AQ96ST3 1273 aa16.56■□□□□ 0.24
HCFC1-203ENST00000444191 POLR3GLQ9BT43 218 aa16.56■□□□□ 0.24
HCFC1-203ENST00000444191 CEP164Q9UPV0 1460 aa16.54■□□□□ 0.24
HCFC1-203ENST00000444191 BCL11AQ9H165 835 aa16.53■□□□□ 0.24
HCFC1-203ENST00000444191 IRX6P78412 446 aaPredicted RBP16.52■□□□□ 0.23
HCFC1-203ENST00000444191 ARID3CA6NKF2 412 aa16.51■□□□□ 0.23
HCFC1-203ENST00000444191 ANP32CO43423 234 aa16.49■□□□□ 0.23
HCFC1-203ENST00000444191 VPS8Q8N3P4 1428 aa16.49■□□□□ 0.23
HCFC1-203ENST00000444191 RAPGEF2Q9Y4G8 1499 aa16.48■□□□□ 0.23
HCFC1-203ENST00000444191 TOP2AP11388 1531 aaKnown RBP16.48■□□□□ 0.23
HCFC1-203ENST00000444191 SMARCA2P51531 1590 aa16.42■□□□□ 0.22
HCFC1-203ENST00000444191 SENP3-EIF4A1A0A087X0R7 540 aa16.41■□□□□ 0.22
HCFC1-203ENST00000444191 SMARCA4P51532 1647 aa16.38■□□□□ 0.21
HCFC1-203ENST00000444191 DHX57Q6P158 1386 aaKnown RBP16.38■□□□□ 0.21
HCFC1-203ENST00000444191 TSHZ2Q9NRE2 1034 aa16.38■□□□□ 0.21
HCFC1-203ENST00000444191 HNRNPUQ00839 825 aaKnown RBP eCLIP16.37■□□□□ 0.21
HCFC1-203ENST00000444191 BAZ1BQ9UIG0 1483 aaKnown RBP16.37■□□□□ 0.21
HCFC1-203ENST00000444191 ANP32EQ9BTT0 268 aa16.36■□□□□ 0.21
HCFC1-203ENST00000444191 CHIC2Q9UKJ5 165 aa16.35■□□□□ 0.21
HCFC1-203ENST00000444191 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
HCFC1-203ENST00000444191 CCNB3Q8WWL7 1395 aa16.32■□□□□ 0.2
HCFC1-203ENST00000444191 ZNF326Q5BKZ1 582 aaKnown RBP16.3■□□□□ 0.2
HCFC1-203ENST00000444191 TONSLQ96HA7 1378 aa16.28■□□□□ 0.2
HCFC1-203ENST00000444191 FAM9BQ8IZU0 186 aa16.28■□□□□ 0.2
HCFC1-203ENST00000444191 RAB3GAP2Q9H2M9 1393 aa16.27■□□□□ 0.2
HCFC1-203ENST00000444191 CLSPNQ9HAW4 1339 aa16.25■□□□□ 0.19
HCFC1-203ENST00000444191 CDK11AQ9UQ88 783 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms