RNA–Protein interactions for RNA: ENST00000563663.5

SCAMP2-203, Transcript of secretory carrier membrane protein 2, humanhuman

TSL 5

Gene SCAMP2, Length 1,787 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP2-203ENST00000563663 NISCHQ9Y2I1 1504 aa35.82■■■■□ 3.33
SCAMP2-203ENST00000563663 CCDC180Q9P1Z9 1646 aa31.8■■■□□ 2.68
SCAMP2-203ENST00000563663 ABCC9O60706 1549 aa30.84■■■□□ 2.53
SCAMP2-203ENST00000563663 ZCCHC6Q5VYS8 1495 aaKnown RBP29.92■■■□□ 2.38
SCAMP2-203ENST00000563663 NACADO15069 1562 aa29.8■■■□□ 2.36
SCAMP2-203ENST00000563663 RB1CC1Q8TDY2 1594 aa29.75■■■□□ 2.35
SCAMP2-203ENST00000563663 MYO15BQ96JP2 1530 aa29.74■■■□□ 2.35
SCAMP2-203ENST00000563663 DCAF1Q9Y4B6 1507 aa29.68■■■□□ 2.34
SCAMP2-203ENST00000563663 DCAF8L2P0C7V8 631 aa29.57■■■□□ 2.32
SCAMP2-203ENST00000563663 UNC13AQ9UPW8 1703 aa29.25■■■□□ 2.27
SCAMP2-203ENST00000563663 BICRAQ9NZM4 1560 aa29■■■□□ 2.23
SCAMP2-203ENST00000563663 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
SCAMP2-203ENST00000563663 PABPN1Q86U42 306 aaKnown RBP eCLIP28.8■■■□□ 2.2
SCAMP2-203ENST00000563663 SHROOM4Q9ULL8 1493 aa28.61■■■□□ 2.17
SCAMP2-203ENST00000563663 DNAJC5BQ9UF47 199 aa28.22■■■□□ 2.11
SCAMP2-203ENST00000563663 EIF4G1Q04637 1599 aaKnown RBP28.14■■■□□ 2.1
SCAMP2-203ENST00000563663 CC2D2AQ9P2K1 1620 aa27.97■■■□□ 2.07
SCAMP2-203ENST00000563663 CECR2Q9BXF3 1484 aa27.9■■■□□ 2.06
SCAMP2-203ENST00000563663 SMARCA4P51532 1647 aa27.77■■■□□ 2.04
SCAMP2-203ENST00000563663 BAZ1AQ9NRL2 1556 aaPredicted RBP27.71■■■□□ 2.03
SCAMP2-203ENST00000563663 MROH2BQ7Z745 1585 aa27.63■■■□□ 2.01
SCAMP2-203ENST00000563663 ATAD2BQ9ULI0 1458 aa27.56■■■□□ 2
SCAMP2-203ENST00000563663 PEG3Q9GZU2 1588 aa27.55■■■□□ 2
SCAMP2-203ENST00000563663 NCAPD3P42695 1498 aa27.51■■□□□ 1.99
SCAMP2-203ENST00000563663 SMARCA2P51531 1590 aa27.49■■□□□ 1.99
SCAMP2-203ENST00000563663 HMGXB3Q12766 1538 aa27.42■■□□□ 1.98
SCAMP2-203ENST00000563663 RSF1Q96T23 1441 aaPredicted RBP27.35■■□□□ 1.97
SCAMP2-203ENST00000563663 WIZO95785 1651 aa27.34■■□□□ 1.97
SCAMP2-203ENST00000563663 BAZ1BQ9UIG0 1483 aaKnown RBP27.28■■□□□ 1.96
SCAMP2-203ENST00000563663 TOP2AP11388 1531 aaKnown RBP27.04■■□□□ 1.92
SCAMP2-203ENST00000563663 NESP48681 1621 aa26.81■■□□□ 1.88
SCAMP2-203ENST00000563663 LAMC3Q9Y6N6 1575 aa26.74■■□□□ 1.87
SCAMP2-203ENST00000563663 CCDC88BA6NC98 1476 aa26.7■■□□□ 1.86
SCAMP2-203ENST00000563663 CADPSQ9ULU8 1353 aa26.66■■□□□ 1.86
SCAMP2-203ENST00000563663 CFTRP13569 1480 aa26.6■■□□□ 1.85
SCAMP2-203ENST00000563663 SUPT5HO00267 1087 aaKnown RBP26.59■■□□□ 1.85
SCAMP2-203ENST00000563663 KIF21AQ7Z4S6 1674 aa26.53■■□□□ 1.84
SCAMP2-203ENST00000563663 ERCC6Q03468 1493 aa26.48■■□□□ 1.83
SCAMP2-203ENST00000563663 PRDM2Q13029 1718 aa26.47■■□□□ 1.83
SCAMP2-203ENST00000563663 PDS5BQ9NTI5 1447 aa26.47■■□□□ 1.83
SCAMP2-203ENST00000563663 THOC2Q8NI27 1593 aaKnown RBP26.42■■□□□ 1.82
SCAMP2-203ENST00000563663 FANCD2Q9BXW9 1451 aa26.37■■□□□ 1.81
SCAMP2-203ENST00000563663 CEP164Q9UPV0 1460 aa26.3■■□□□ 1.8
SCAMP2-203ENST00000563663 MRC2Q9UBG0 1479 aa26.25■■□□□ 1.79
SCAMP2-203ENST00000563663 CUX2O14529 1486 aa26.23■■□□□ 1.79
SCAMP2-203ENST00000563663 WDR62O43379 1518 aa26.23■■□□□ 1.79
SCAMP2-203ENST00000563663 URB2Q14146 1524 aaKnown RBP26.16■■□□□ 1.78
SCAMP2-203ENST00000563663 TOPBP1Q92547 1522 aa26■■□□□ 1.75
SCAMP2-203ENST00000563663 DNMBPQ6XZF7 1577 aa25.99■■□□□ 1.75
SCAMP2-203ENST00000563663 ABCC8Q09428 1581 aa25.92■■□□□ 1.74
SCAMP2-203ENST00000563663 CUX1P39880 1505 aa25.91■■□□□ 1.74
SCAMP2-203ENST00000563663 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
SCAMP2-203ENST00000563663 TARBP1Q13395 1621 aaKnown RBP25.77■■□□□ 1.72
SCAMP2-203ENST00000563663 SYNJ1O43426 1573 aa25.75■■□□□ 1.71
SCAMP2-203ENST00000563663 FGD5Q6ZNL6 1462 aa25.74■■□□□ 1.71
SCAMP2-203ENST00000563663 IFT140Q96RY7 1462 aa25.74■■□□□ 1.71
SCAMP2-203ENST00000563663 BIVM-ERCC5R4GMW8 1640 aa25.74■■□□□ 1.71
SCAMP2-203ENST00000563663 TOP2BQ02880 1626 aa25.72■■□□□ 1.71
SCAMP2-203ENST00000563663 WRNQ14191 1432 aaPredicted RBP eCLIP25.72■■□□□ 1.71
SCAMP2-203ENST00000563663 ZNF608Q9ULD9 1512 aaPredicted RBP25.69■■□□□ 1.7
SCAMP2-203ENST00000563663 RAD54L2Q9Y4B4 1467 aa25.67■■□□□ 1.7
SCAMP2-203ENST00000563663 WDR97A6NE52 1622 aa25.64■■□□□ 1.69
SCAMP2-203ENST00000563663 SOGA1O94964 1423 aa25.61■■□□□ 1.69
SCAMP2-203ENST00000563663 EIF4G3O43432 1585 aaKnown RBP25.6■■□□□ 1.69
SCAMP2-203ENST00000563663 ABCA10Q8WWZ4 1543 aa25.52■■□□□ 1.68
SCAMP2-203ENST00000563663 AQRO60306 1485 aaKnown RBP eCLIP25.51■■□□□ 1.675e-7■■■□□ 17.7
SCAMP2-203ENST00000563663 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
SCAMP2-203ENST00000563663 TDRD9Q8NDG6 1382 aaKnown RBP25.46■■□□□ 1.67
SCAMP2-203ENST00000563663 PBRM1Q86U86 1689 aa25.36■■□□□ 1.65
SCAMP2-203ENST00000563663 GAPVD1Q14C86 1478 aa25.35■■□□□ 1.65
SCAMP2-203ENST00000563663 GRIN2BQ13224 1484 aa25.31■■□□□ 1.64
SCAMP2-203ENST00000563663 SNAPC4Q5SXM2 1469 aa25.29■■□□□ 1.64
SCAMP2-203ENST00000563663 MAGI1Q96QZ7 1491 aaPredicted RBP25.25■■□□□ 1.63
SCAMP2-203ENST00000563663 CHD1O14646 1710 aa25.25■■□□□ 1.63
SCAMP2-203ENST00000563663 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
SCAMP2-203ENST00000563663 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
SCAMP2-203ENST00000563663 DNAJC5Q9H3Z4 198 aa25.18■■□□□ 1.62
SCAMP2-203ENST00000563663 SYNJ2O15056 1496 aa25.15■■□□□ 1.62
SCAMP2-203ENST00000563663 KIF27Q86VH2 1401 aa25.13■■□□□ 1.61
SCAMP2-203ENST00000563663 TRIM41Q8WV44 630 aa25.1■■□□□ 1.61
SCAMP2-203ENST00000563663 RUSC2Q8N2Y8 1516 aa25.07■■□□□ 1.6
SCAMP2-203ENST00000563663 IGF1RP08069 1367 aa25.07■■□□□ 1.6
SCAMP2-203ENST00000563663 OSCARQ8IYS5 282 aa25.06■■□□□ 1.6
SCAMP2-203ENST00000563663 FHAD1B1AJZ9 1412 aa25.05■■□□□ 1.6
SCAMP2-203ENST00000563663 GRIN2AQ12879 1464 aa25.03■■□□□ 1.6
SCAMP2-203ENST00000563663 CHIC1Q5VXU3 224 aa25.02■■□□□ 1.6
SCAMP2-203ENST00000563663 CUL7Q14999 1698 aa25■■□□□ 1.59
SCAMP2-203ENST00000563663 CLASP1Q7Z460 1538 aa25■■□□□ 1.59
SCAMP2-203ENST00000563663 FBLN2P98095 1184 aa24.98■■□□□ 1.59
SCAMP2-203ENST00000563663 CHMP7Q8WUX9 453 aaPredicted RBP24.98■■□□□ 1.59
SCAMP2-203ENST00000563663 CEP170Q5SW79 1584 aa24.95■■□□□ 1.58
SCAMP2-203ENST00000563663 NUP160Q12769 1436 aa24.95■■□□□ 1.58
SCAMP2-203ENST00000563663 CARMIL1Q5VZK9 1371 aa24.87■■□□□ 1.57
SCAMP2-203ENST00000563663 RIMBP3CA6NJZ7 1639 aa24.8■■□□□ 1.56
SCAMP2-203ENST00000563663 RIMBP3BA6NNM3 1639 aa24.8■■□□□ 1.56
SCAMP2-203ENST00000563663 RIMBP3Q9UFD9 1639 aa24.8■■□□□ 1.56
SCAMP2-203ENST00000563663 ARHGEF11O15085 1522 aa24.8■■□□□ 1.56
SCAMP2-203ENST00000563663 PRXQ9BXM0 1461 aa24.8■■□□□ 1.56
SCAMP2-203ENST00000563663 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
SCAMP2-203ENST00000563663 EEA1Q15075 1411 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms