Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 REXO2-204ENST00000538791 1081 ntTSL 215.74■□□□□ 0.116e-8■□□□□ 10
YBX3P16989 REXO2-218ENST00000544827 880 ntTSL 3 BASIC8.76□□□□□ -1.016e-8■□□□□ 10
YBX3P16989 REXO2-203ENST00000538403 753 ntTSL 28.43□□□□□ -1.066e-8■□□□□ 10
YBX3P16989 REXO2-209ENST00000539788 626 ntTSL 38.26□□□□□ -1.096e-8■□□□□ 10
YBX3P16989 REXO2-217ENST00000544507 641 ntTSL 36.93□□□□□ -1.36e-8■□□□□ 10
YBX3P16989 REXO2-219ENST00000546316 726 ntTSL 36.3□□□□□ -1.46e-8■□□□□ 10
YBX3P16989 ARHGEF12-208ENST00000529970 3786 ntTSL 25.8□□□□□ -1.481e-6■□□□□ 10
YBX3P16989 LMAN2-205ENST00000506310 564 ntTSL 418.41■□□□□ 0.543e-9■□□□□ 10
YBX3P16989 DHX40-201ENST00000251241 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.741e-8■□□□□ 10
YBX3P16989 EIF3D-210ENST00000462794 764 ntTSL 28.75□□□□□ -1.012e-16■□□□□ 10
YBX3P16989 NDUFA2-203ENST00000510680 576 ntTSL 218.44■□□□□ 0.542e-10■□□□□ 10
YBX3P16989 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC22.83■■□□□ 1.255e-8■□□□□ 10
YBX3P16989 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.595e-8■□□□□ 10
YBX3P16989 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.93■□□□□ 0.35e-8■□□□□ 10
YBX3P16989 WDR1-201ENST00000264785 549 ntTSL 410.09□□□□□ -0.794e-10■□□□□ 10
YBX3P16989 SEC61A1-203ENST00000464451 1871 ntTSL 2 BASIC14.61□□□□□ -0.073e-8■□□□□ 10
YBX3P16989 RACK1-223ENST00000510199 1100 ntTSL 314.57□□□□□ -0.087e-44■□□□□ 10
YBX3P16989 TIMMDC1-205ENST00000486418 551 ntTSL 319.9■□□□□ 0.782e-6■□□□□ 10
YBX3P16989 TIMMDC1-201ENST00000264244 1271 ntTSL 1 (best)17.87■□□□□ 0.452e-6■□□□□ 10
YBX3P16989 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC17.87■□□□□ 0.452e-6■□□□□ 10
YBX3P16989 TIMMDC1-206ENST00000492164 725 ntTSL 317■□□□□ 0.312e-6■□□□□ 10
YBX3P16989 TIMMDC1-203ENST00000466984 605 ntTSL 516.22■□□□□ 0.192e-6■□□□□ 10
YBX3P16989 TIMMDC1-208ENST00000494664 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.112e-6■□□□□ 10
YBX3P16989 TIMMDC1-202ENST00000463927 670 ntTSL 512.81□□□□□ -0.362e-6■□□□□ 10
YBX3P16989 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.111e-7■□□□□ 10
YBX3P16989 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.12■□□□□ 0.015e-8■□□□□ 10
YBX3P16989 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.965e-8■□□□□ 10
YBX3P16989 RPL8-210ENST00000531767 570 ntTSL 520.62■□□□□ 0.893e-45■□□□□ 10
YBX3P16989 RPS6KB2-203ENST00000524814 550 ntTSL 326.14■■□□□ 1.781e-7■□□□□ 10
YBX3P16989 RPS6KB2-209ENST00000528964 1806 ntTSL 524.5■■□□□ 1.511e-7■□□□□ 10
YBX3P16989 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.331e-7■□□□□ 10
YBX3P16989 RPS6KB2-207ENST00000525996 957 ntTSL 522.8■■□□□ 1.241e-7■□□□□ 10
YBX3P16989 RPS6KB2-202ENST00000420069 461 ntTSL 322.23■■□□□ 1.151e-7■□□□□ 10
YBX3P16989 RPS6KB2-212ENST00000556575 850 ntTSL 521.9■■□□□ 1.11e-7■□□□□ 10
YBX3P16989 RPS8-204ENST00000470475 981 ntTSL 220.26■□□□□ 0.831e-323■□□□□ 10
YBX3P16989 RPS6KB2-205ENST00000525088 5528 ntTSL 214.51□□□□□ -0.091e-7■□□□□ 10
YBX3P16989 EIF2A-212ENST00000482093 725 ntTSL 57.47□□□□□ -1.213e-7■□□□□ 10
YBX3P16989 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.041e-9■□□□□ 10
YBX3P16989 USF2-207ENST00000595068 1612 ntTSL 5 BASIC27.81■■■□□ 2.041e-9■□□□□ 10
YBX3P16989 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.34■■□□□ 1.811e-9■□□□□ 10
YBX3P16989 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.95■■□□□ 1.741e-9■□□□□ 10
YBX3P16989 USF2-216ENST00000607959 1920 ntTSL 525.77■■□□□ 1.721e-9■□□□□ 10
YBX3P16989 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC24.22■■□□□ 1.471e-9■□□□□ 10
YBX3P16989 USF2-213ENST00000600341 1392 ntTSL 222.94■■□□□ 1.261e-9■□□□□ 10
YBX3P16989 USF2-211ENST00000599471 1173 ntTSL 322.29■■□□□ 1.161e-9■□□□□ 10
YBX3P16989 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.44■■□□□ 1.022e-6■□□□□ 10
YBX3P16989 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.22■□□□□ 0.672e-6■□□□□ 10
YBX3P16989 USF2-214ENST00000600898 848 ntTSL 218.66■□□□□ 0.581e-9■□□□□ 10
YBX3P16989 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC17.09■□□□□ 0.332e-6■□□□□ 10
YBX3P16989 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17.06■□□□□ 0.322e-6■□□□□ 10
YBX3P16989 MECP2-226ENST00000640414 897 ntTSL 5 BASIC16.75■□□□□ 0.272e-6■□□□□ 10
YBX3P16989 USF2-206ENST00000594264 2742 ntTSL 215.88■□□□□ 0.131e-9■□□□□ 10
YBX3P16989 USF2-212ENST00000599625 446 ntTSL 212.47□□□□□ -0.411e-9■□□□□ 10
YBX3P16989 DNAJA2-201ENST00000317089 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.441e-6■□□□□ 10
YBX3P16989 DNAJA2-202ENST00000563158 1825 ntTSL 511.91□□□□□ -0.51e-6■□□□□ 10
YBX3P16989 MECP2-224ENST00000637917 159 ntTSL 511.86□□□□□ -0.512e-6■□□□□ 10
YBX3P16989 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.672e-6■□□□□ 10
YBX3P16989 CKAP5-204ENST00000525896 832 ntTSL 29.99□□□□□ -0.813e-6■□□□□ 10
YBX3P16989 ZC3H11A-210ENST00000488411 574 ntTSL 28.24□□□□□ -1.096e-10■□□□□ 10
YBX3P16989 CDC6-203ENST00000577249 541 ntTSL 424.44■■□□□ 1.51e-7■□□□□ 10
YBX3P16989 CDC6-202ENST00000473555 584 ntTSL 27.85□□□□□ -1.151e-7■□□□□ 10
YBX3P16989 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.79□□□□□ -1.321e-8■□□□□ 10
YBX3P16989 NIPSNAP2-210ENST00000487370 494 ntTSL 327.85■■■□□ 2.052e-9■□□□□ 10
YBX3P16989 NIPSNAP2-206ENST00000456204 660 ntTSL 311.73□□□□□ -0.532e-9■□□□□ 10
YBX3P16989 NIPSNAP2-209ENST00000472404 250 ntTSL 53.92□□□□□ -1.782e-9■□□□□ 10
YBX3P16989 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.351e-10■□□□□ 10
YBX3P16989 NSMCE1-214ENST00000569236 1782 ntTSL 216.03■□□□□ 0.161e-10■□□□□ 10
YBX3P16989 NSMCE1-208ENST00000565070 1853 ntTSL 515.16■□□□□ 0.021e-10■□□□□ 10
YBX3P16989 APOO-204ENST00000490078 916 ntTSL 1 (best)28.8■■■□□ 2.26e-10■□□□□ 10
YBX3P16989 AVL9-207ENST00000485228 489 ntTSL 527.86■■■□□ 2.056e-10■□□□□ 10
YBX3P16989 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.425e-6■□□□□ 10
YBX3P16989 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.246e-10■□□□□ 10
YBX3P16989 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.096e-10■□□□□ 10
YBX3P16989 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.66□□□□□ -0.065e-6■□□□□ 10
YBX3P16989 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.47□□□□□ -0.096e-10■□□□□ 10
YBX3P16989 TIMM17A-201ENST00000367287 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.356e-10■□□□□ 10
YBX3P16989 RNF139-202ENST00000517684 467 ntTSL 36.92□□□□□ -1.36e-10■□□□□ 10
YBX3P16989 TIMM17A-203ENST00000482943 2523 ntTSL 26.86□□□□□ -1.316e-10■□□□□ 10
YBX3P16989 GAPDH-210ENST00000496049 390 ntTSL 219.6■□□□□ 0.738e-62■□□□□ 10
YBX3P16989 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.271e-6■□□□□ 10
YBX3P16989 AGPAT5-203ENST00000523234 2525 ntTSL 514.23□□□□□ -0.133e-8■□□□□ 10
YBX3P16989 AGPAT5-202ENST00000518327 852 ntTSL 1 (best)9.17□□□□□ -0.943e-8■□□□□ 10
YBX3P16989 AGPAT5-206ENST00000533159 488 ntTSL 35.64□□□□□ -1.513e-8■□□□□ 10
YBX3P16989 MRPL16-203ENST00000531802 557 ntTSL 223.03■■□□□ 1.282e-8■□□□□ 10
YBX3P16989 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.172e-8■□□□□ 10
YBX3P16989 USP34-218ENST00000490552 1793 ntTSL 211□□□□□ -0.651e-7■□□□□ 10
YBX3P16989 USP34-203ENST00000436269 1827 ntTSL 54.25□□□□□ -1.731e-7■□□□□ 10
YBX3P16989 YIF1A-206ENST00000474986 860 ntTSL 1 (best)28.97■■■□□ 2.233e-6■□□□□ 10
YBX3P16989 YIF1A-202ENST00000376899 1042 ntTSL 228.88■■■□□ 2.213e-6■□□□□ 10
YBX3P16989 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.75e-7■□□□□ 10
YBX3P16989 RABL6-210ENST00000484471 2746 ntTSL 519.87■□□□□ 0.775e-7■□□□□ 10
YBX3P16989 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.495e-7■□□□□ 10
YBX3P16989 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.485e-7■□□□□ 10
YBX3P16989 SND1-209ENST00000470723 568 ntTSL 415.75■□□□□ 0.111e-12■□□□□ 10
YBX3P16989 SND1-213ENST00000486037 695 ntTSL 314.53□□□□□ -0.081e-12■□□□□ 10
YBX3P16989 SND1-211ENST00000484767 460 ntTSL 49.36□□□□□ -0.911e-12■□□□□ 10
YBX3P16989 CDK4-208ENST00000551706 984 ntTSL 1 (best)23.2■■□□□ 1.34e-7■□□□□ 10
YBX3P16989 CDK4-212ENST00000552388 694 ntTSL 316.98■□□□□ 0.314e-7■□□□□ 10
YBX3P16989 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC36.94■■■■□ 3.56e-10■□□□□ 9.9
YBX3P16989 UBR4-206ENST00000419533 5583 ntTSL 58.95□□□□□ -0.985e-11■□□□□ 9.9
Retrieved 100 of 29,075 protein–RNA pairs in 526.3 ms