RNA–Protein interactions for RNA: ENST00000343550.9

USF2-202, Transcript of upstream transcription factor 2, c-fos interacting, humanhuman

TSL 1 (best) BASIC

Gene USF2, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF2-202ENST00000343550 NISCHQ9Y2I1 1504 aa44.28■■■■■ 4.68
USF2-202ENST00000343550 CCDC180Q9P1Z9 1646 aa39.62■■■■□ 3.93
USF2-202ENST00000343550 ABCC9O60706 1549 aa39.6■■■■□ 3.93
USF2-202ENST00000343550 RB1CC1Q8TDY2 1594 aa37.71■■■■□ 3.63
USF2-202ENST00000343550 NACADO15069 1562 aa37.49■■■■□ 3.59
USF2-202ENST00000343550 DCAF8L2P0C7V8 631 aa37.42■■■■□ 3.58
USF2-202ENST00000343550 DNAJC5BQ9UF47 199 aa37.12■■■■□ 3.53
USF2-202ENST00000343550 MYO15BQ96JP2 1530 aa37.01■■■■□ 3.52
USF2-202ENST00000343550 PABPN1Q86U42 306 aaKnown RBP eCLIP36.95■■■■□ 3.58e-7■□□□□ 11.1
USF2-202ENST00000343550 UNC13AQ9UPW8 1703 aa36.78■■■■□ 3.48
USF2-202ENST00000343550 ZCCHC6Q5VYS8 1495 aaKnown RBP36.7■■■■□ 3.47
USF2-202ENST00000343550 BICRAQ9NZM4 1560 aa36.6■■■■□ 3.45
USF2-202ENST00000343550 DCAF1Q9Y4B6 1507 aa36.57■■■■□ 3.45
USF2-202ENST00000343550 SCRIBQ14160 1630 aa36.14■■■■□ 3.38
USF2-202ENST00000343550 SHROOM4Q9ULL8 1493 aa36.13■■■■□ 3.37
USF2-202ENST00000343550 CC2D2AQ9P2K1 1620 aa35.75■■■■□ 3.31
USF2-202ENST00000343550 EIF4G1Q04637 1599 aaKnown RBP35.7■■■■□ 3.31
USF2-202ENST00000343550 CECR2Q9BXF3 1484 aa35.67■■■■□ 3.3
USF2-202ENST00000343550 NCAPD3P42695 1498 aa34.65■■■■□ 3.14
USF2-202ENST00000343550 ATAD2BQ9ULI0 1458 aa34.54■■■■□ 3.12
USF2-202ENST00000343550 SMARCA4P51532 1647 aa34.49■■■■□ 3.11
USF2-202ENST00000343550 SMARCA2P51531 1590 aa34.43■■■■□ 3.1
USF2-202ENST00000343550 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
USF2-202ENST00000343550 HMGXB3Q12766 1538 aa34.34■■■■□ 3.09
USF2-202ENST00000343550 BAZ1BQ9UIG0 1483 aaKnown RBP34.2■■■■□ 3.07
USF2-202ENST00000343550 ERCC6Q03468 1493 aa34.19■■■■□ 3.06
USF2-202ENST00000343550 PEG3Q9GZU2 1588 aa34.16■■■■□ 3.06
USF2-202ENST00000343550 MROH2BQ7Z745 1585 aa34.12■■■■□ 3.05
USF2-202ENST00000343550 CUX2O14529 1486 aa34.08■■■■□ 3.05
USF2-202ENST00000343550 NESP48681 1621 aa34.05■■■■□ 3.04
USF2-202ENST00000343550 DNAJC5Q9H3Z4 198 aa34.02■■■■□ 3.04
USF2-202ENST00000343550 LAMC3Q9Y6N6 1575 aa33.8■■■■□ 3
USF2-202ENST00000343550 WIZO95785 1651 aa33.69■■■□□ 2.98
USF2-202ENST00000343550 PDS5BQ9NTI5 1447 aa33.66■■■□□ 2.98
USF2-202ENST00000343550 THOC2Q8NI27 1593 aaKnown RBP33.62■■■□□ 2.97
USF2-202ENST00000343550 CADPSQ9ULU8 1353 aa33.61■■■□□ 2.97
USF2-202ENST00000343550 KIF21AQ7Z4S6 1674 aa33.54■■■□□ 2.96
USF2-202ENST00000343550 RSF1Q96T23 1441 aaPredicted RBP33.48■■■□□ 2.95
USF2-202ENST00000343550 MRC2Q9UBG0 1479 aa33.32■■■□□ 2.93
USF2-202ENST00000343550 TOP2AP11388 1531 aaKnown RBP33.27■■■□□ 2.92
USF2-202ENST00000343550 CFTRP13569 1480 aa33.23■■■□□ 2.91
USF2-202ENST00000343550 WDR62O43379 1518 aa33.22■■■□□ 2.91
USF2-202ENST00000343550 CEP164Q9UPV0 1460 aa33.22■■■□□ 2.91
USF2-202ENST00000343550 FANCD2Q9BXW9 1451 aa33.2■■■□□ 2.91
USF2-202ENST00000343550 CCDC88BA6NC98 1476 aa32.94■■■□□ 2.86
USF2-202ENST00000343550 URB2Q14146 1524 aaKnown RBP32.91■■■□□ 2.86
USF2-202ENST00000343550 PRDM2Q13029 1718 aa32.78■■■□□ 2.84
USF2-202ENST00000343550 OSCARQ8IYS5 282 aa32.62■■■□□ 2.81
USF2-202ENST00000343550 TOPBP1Q92547 1522 aa32.57■■■□□ 2.8
USF2-202ENST00000343550 IFT140Q96RY7 1462 aa32.56■■■□□ 2.8
USF2-202ENST00000343550 TRIM41Q8WV44 630 aa32.56■■■□□ 2.8
USF2-202ENST00000343550 ABCC8Q09428 1581 aa32.53■■■□□ 2.8
USF2-202ENST00000343550 ZNF608Q9ULD9 1512 aaPredicted RBP32.5■■■□□ 2.79
USF2-202ENST00000343550 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
USF2-202ENST00000343550 DNMBPQ6XZF7 1577 aa32.43■■■□□ 2.78
USF2-202ENST00000343550 EIF4G3O43432 1585 aaKnown RBP32.27■■■□□ 2.76
USF2-202ENST00000343550 TARBP1Q13395 1621 aaKnown RBP32.25■■■□□ 2.75
USF2-202ENST00000343550 POLA1P09884 1462 aaPredicted RBP32.25■■■□□ 2.75
USF2-202ENST00000343550 AQRO60306 1485 aaKnown RBP eCLIP32.24■■■□□ 2.751e-7■■■■□ 23
USF2-202ENST00000343550 RAD54L2Q9Y4B4 1467 aa32.15■■■□□ 2.74
USF2-202ENST00000343550 SOGA1O94964 1423 aa32.14■■■□□ 2.74
USF2-202ENST00000343550 RIMBP3CA6NJZ7 1639 aa32.08■■■□□ 2.73
USF2-202ENST00000343550 RIMBP3BA6NNM3 1639 aa32.08■■■□□ 2.73
USF2-202ENST00000343550 RIMBP3Q9UFD9 1639 aa32.08■■■□□ 2.73
USF2-202ENST00000343550 TDRD9Q8NDG6 1382 aaKnown RBP32.07■■■□□ 2.72
USF2-202ENST00000343550 FGD5Q6ZNL6 1462 aa32.06■■■□□ 2.72
USF2-202ENST00000343550 FBLN2P98095 1184 aa32.05■■■□□ 2.72
USF2-202ENST00000343550 CUX1P39880 1505 aa32.04■■■□□ 2.72
USF2-202ENST00000343550 ARHGEF11O15085 1522 aa32.01■■■□□ 2.72
USF2-202ENST00000343550 CHD1O14646 1710 aa31.99■■■□□ 2.71
USF2-202ENST00000343550 WDR97A6NE52 1622 aa31.91■■■□□ 2.7
USF2-202ENST00000343550 SNAPC4Q5SXM2 1469 aa31.88■■■□□ 2.69
USF2-202ENST00000343550 CYB5RLQ6IPT4 315 aa31.85■■■□□ 2.69
USF2-202ENST00000343550 CHMP7Q8WUX9 453 aaPredicted RBP31.83■■■□□ 2.69
USF2-202ENST00000343550 GRIN2BQ13224 1484 aa31.83■■■□□ 2.69
USF2-202ENST00000343550 MAGI1Q96QZ7 1491 aaPredicted RBP31.81■■■□□ 2.68
USF2-202ENST00000343550 GAPVD1Q14C86 1478 aa31.73■■■□□ 2.67
USF2-202ENST00000343550 ABCA10Q8WWZ4 1543 aa31.71■■■□□ 2.67
USF2-202ENST00000343550 SYNJ2O15056 1496 aa31.7■■■□□ 2.67
USF2-202ENST00000343550 ARAP1Q96P48 1450 aa31.7■■■□□ 2.67
USF2-202ENST00000343550 CLASP1Q7Z460 1538 aa31.67■■■□□ 2.66
USF2-202ENST00000343550 SYNJ1O43426 1573 aa31.66■■■□□ 2.66
USF2-202ENST00000343550 WRNQ14191 1432 aaPredicted RBP eCLIP31.63■■■□□ 2.65
USF2-202ENST00000343550 PBRM1Q86U86 1689 aa31.62■■■□□ 2.65
USF2-202ENST00000343550 ABCA5Q8WWZ7 1642 aa31.61■■■□□ 2.65
USF2-202ENST00000343550 TOP2BQ02880 1626 aa31.54■■■□□ 2.64
USF2-202ENST00000343550 BIVM-ERCC5R4GMW8 1640 aa31.51■■■□□ 2.64
USF2-202ENST00000343550 TRHP20396 242 aaPredicted RBP31.46■■■□□ 2.63
USF2-202ENST00000343550 GRIN2AQ12879 1464 aa31.4■■■□□ 2.62
USF2-202ENST00000343550 ADAMTS12P58397 1594 aa31.36■■■□□ 2.61
USF2-202ENST00000343550 FHAD1B1AJZ9 1412 aa31.34■■■□□ 2.61
USF2-202ENST00000343550 NUP160Q12769 1436 aa31.31■■■□□ 2.6
USF2-202ENST00000343550 ERICH3Q5RHP9 1530 aa31.3■■■□□ 2.6
USF2-202ENST00000343550 CEP170Q5SW79 1584 aa31.26■■■□□ 2.6
USF2-202ENST00000343550 ERCC6L2Q5T890 1561 aa31.19■■■□□ 2.58
USF2-202ENST00000343550 SHROOM2Q13796 1616 aa31.11■■■□□ 2.57
USF2-202ENST00000343550 JPH4Q96JJ6 628 aa31.05■■■□□ 2.56
USF2-202ENST00000343550 PRG4Q92954 1404 aaPredicted RBP31.01■■■□□ 2.56
USF2-202ENST00000343550 IGF1RP08069 1367 aa30.99■■■□□ 2.55
USF2-202ENST00000343550 KIF27Q86VH2 1401 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms