RNA–Protein interactions for RNA: ENST00000496049.1

GAPDH-210, Transcript of glyceraldehyde-3-phosphate dehydrogenase, humanhuman

TSL 2

Gene GAPDH, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Exosome, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPDH-210ENST00000496049 NISCHQ9Y2I1 1504 aa34.99■■■■□ 3.19
GAPDH-210ENST00000496049 ABCC9O60706 1549 aa32.22■■■□□ 2.75
GAPDH-210ENST00000496049 DNAJC5BQ9UF47 199 aa31.22■■■□□ 2.59
GAPDH-210ENST00000496049 CCDC180Q9P1Z9 1646 aa31.02■■■□□ 2.56
GAPDH-210ENST00000496049 RB1CC1Q8TDY2 1594 aa30.08■■■□□ 2.41
GAPDH-210ENST00000496049 PABPN1Q86U42 306 aaKnown RBP eCLIP29.79■■■□□ 2.36
GAPDH-210ENST00000496049 UNC13AQ9UPW8 1703 aa29.56■■■□□ 2.32
GAPDH-210ENST00000496049 NACADO15069 1562 aa29.54■■■□□ 2.32
GAPDH-210ENST00000496049 DNAJC5Q9H3Z4 198 aa29.46■■■□□ 2.31
GAPDH-210ENST00000496049 ZCCHC6Q5VYS8 1495 aaKnown RBP29.32■■■□□ 2.28
GAPDH-210ENST00000496049 BICRAQ9NZM4 1560 aa29.29■■■□□ 2.28
GAPDH-210ENST00000496049 DCAF8L2P0C7V8 631 aa29.23■■■□□ 2.27
GAPDH-210ENST00000496049 CECR2Q9BXF3 1484 aa29.1■■■□□ 2.25
GAPDH-210ENST00000496049 CC2D2AQ9P2K1 1620 aa29.04■■■□□ 2.24
GAPDH-210ENST00000496049 DCAF1Q9Y4B6 1507 aa29.02■■■□□ 2.24
GAPDH-210ENST00000496049 MYO15BQ96JP2 1530 aa28.89■■■□□ 2.21
GAPDH-210ENST00000496049 EIF4G1Q04637 1599 aaKnown RBP28.66■■■□□ 2.18
GAPDH-210ENST00000496049 SHROOM4Q9ULL8 1493 aa28.62■■■□□ 2.17
GAPDH-210ENST00000496049 SCRIBQ14160 1630 aa28.29■■■□□ 2.12
GAPDH-210ENST00000496049 CUX2O14529 1486 aa28.15■■■□□ 2.1
GAPDH-210ENST00000496049 ERCC6Q03468 1493 aa27.89■■■□□ 2.05
GAPDH-210ENST00000496049 TRIM41Q8WV44 630 aa27.82■■■□□ 2.04
GAPDH-210ENST00000496049 NESP48681 1621 aa27.36■■□□□ 1.97
GAPDH-210ENST00000496049 THOC2Q8NI27 1593 aaKnown RBP27.31■■□□□ 1.96
GAPDH-210ENST00000496049 NCAPD3P42695 1498 aa27.25■■□□□ 1.95
GAPDH-210ENST00000496049 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.93
GAPDH-210ENST00000496049 SMARCA2P51531 1590 aa27.13■■□□□ 1.93
GAPDH-210ENST00000496049 ATAD2BQ9ULI0 1458 aa27.05■■□□□ 1.92
GAPDH-210ENST00000496049 SMARCA4P51532 1647 aa27.05■■□□□ 1.92
GAPDH-210ENST00000496049 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
GAPDH-210ENST00000496049 HMGXB3Q12766 1538 aa27■■□□□ 1.91
GAPDH-210ENST00000496049 MROH2BQ7Z745 1585 aa26.95■■□□□ 1.9
GAPDH-210ENST00000496049 LAMC3Q9Y6N6 1575 aa26.88■■□□□ 1.89
GAPDH-210ENST00000496049 RSF1Q96T23 1441 aaPredicted RBP26.87■■□□□ 1.89
GAPDH-210ENST00000496049 PEG3Q9GZU2 1588 aa26.76■■□□□ 1.87
GAPDH-210ENST00000496049 BAZ1BQ9UIG0 1483 aaKnown RBP26.76■■□□□ 1.87
GAPDH-210ENST00000496049 WIZO95785 1651 aa26.73■■□□□ 1.87
GAPDH-210ENST00000496049 PDS5BQ9NTI5 1447 aa26.73■■□□□ 1.87
GAPDH-210ENST00000496049 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.86
GAPDH-210ENST00000496049 MRC2Q9UBG0 1479 aa26.64■■□□□ 1.86
GAPDH-210ENST00000496049 OSCARQ8IYS5 282 aa26.64■■□□□ 1.86
GAPDH-210ENST00000496049 WDR62O43379 1518 aa26.61■■□□□ 1.85
GAPDH-210ENST00000496049 RIMBP3CA6NJZ7 1639 aa26.58■■□□□ 1.85
GAPDH-210ENST00000496049 RIMBP3BA6NNM3 1639 aa26.58■■□□□ 1.85
GAPDH-210ENST00000496049 RIMBP3Q9UFD9 1639 aa26.58■■□□□ 1.85
GAPDH-210ENST00000496049 TOP2AP11388 1531 aaKnown RBP26.54■■□□□ 1.84
GAPDH-210ENST00000496049 AEBP2Q6ZN18 517 aaPredicted RBP26.4■■□□□ 1.82
GAPDH-210ENST00000496049 CADPSQ9ULU8 1353 aa26.38■■□□□ 1.81
GAPDH-210ENST00000496049 ARHGEF11O15085 1522 aa26.32■■□□□ 1.8
GAPDH-210ENST00000496049 TRHP20396 242 aaPredicted RBP26.3■■□□□ 1.8
GAPDH-210ENST00000496049 CEP164Q9UPV0 1460 aa26.3■■□□□ 1.8
GAPDH-210ENST00000496049 CYB5RLQ6IPT4 315 aa26.17■■□□□ 1.78
GAPDH-210ENST00000496049 FANCD2Q9BXW9 1451 aa26.16■■□□□ 1.78
GAPDH-210ENST00000496049 CCDC88BA6NC98 1476 aa26.13■■□□□ 1.77
GAPDH-210ENST00000496049 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
GAPDH-210ENST00000496049 ARAP1Q96P48 1450 aa25.99■■□□□ 1.75
GAPDH-210ENST00000496049 ZNF608Q9ULD9 1512 aaPredicted RBP25.93■■□□□ 1.74
GAPDH-210ENST00000496049 CHD1O14646 1710 aa25.85■■□□□ 1.73
GAPDH-210ENST00000496049 CFTRP13569 1480 aa25.84■■□□□ 1.73
GAPDH-210ENST00000496049 PRDM2Q13029 1718 aa25.83■■□□□ 1.73
GAPDH-210ENST00000496049 IFT140Q96RY7 1462 aa25.78■■□□□ 1.72
GAPDH-210ENST00000496049 EIF4G3O43432 1585 aaKnown RBP25.76■■□□□ 1.71
GAPDH-210ENST00000496049 FBLN2P98095 1184 aa25.61■■□□□ 1.69
GAPDH-210ENST00000496049 TOPBP1Q92547 1522 aa25.53■■□□□ 1.68
GAPDH-210ENST00000496049 AQRO60306 1485 aaKnown RBP eCLIP25.52■■□□□ 1.681e-15■■■■■ 35.1
GAPDH-210ENST00000496049 ILDR1Q86SU0 546 aaPredicted RBP25.46■■□□□ 1.67
GAPDH-210ENST00000496049 ABCC8Q09428 1581 aa25.42■■□□□ 1.66
GAPDH-210ENST00000496049 CLASP1Q7Z460 1538 aa25.42■■□□□ 1.66
GAPDH-210ENST00000496049 TARBP1Q13395 1621 aaKnown RBP25.41■■□□□ 1.66
GAPDH-210ENST00000496049 WRNQ14191 1432 aaPredicted RBP eCLIP25.38■■□□□ 1.65
GAPDH-210ENST00000496049 DNMBPQ6XZF7 1577 aa25.34■■□□□ 1.65
GAPDH-210ENST00000496049 SYNJ1O43426 1573 aa25.29■■□□□ 1.64
GAPDH-210ENST00000496049 BIVM-ERCC5R4GMW8 1640 aa25.29■■□□□ 1.64
GAPDH-210ENST00000496049 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
GAPDH-210ENST00000496049 CHIC1Q5VXU3 224 aa25.28■■□□□ 1.64
GAPDH-210ENST00000496049 CUX1P39880 1505 aa25.27■■□□□ 1.64
GAPDH-210ENST00000496049 SNAPC4Q5SXM2 1469 aa25.25■■□□□ 1.63
GAPDH-210ENST00000496049 GAPVD1Q14C86 1478 aa25.22■■□□□ 1.63
GAPDH-210ENST00000496049 POLA1P09884 1462 aaPredicted RBP25.19■■□□□ 1.62
GAPDH-210ENST00000496049 TDRD9Q8NDG6 1382 aaKnown RBP25.17■■□□□ 1.62
GAPDH-210ENST00000496049 RAD54L2Q9Y4B4 1467 aa25.16■■□□□ 1.62
GAPDH-210ENST00000496049 CHMP7Q8WUX9 453 aaPredicted RBP25.16■■□□□ 1.62
GAPDH-210ENST00000496049 KIF13AQ9H1H9 1805 aa25.1■■□□□ 1.61
GAPDH-210ENST00000496049 FGD5Q6ZNL6 1462 aa25.09■■□□□ 1.61
GAPDH-210ENST00000496049 MAGI1Q96QZ7 1491 aaPredicted RBP25.06■■□□□ 1.6
GAPDH-210ENST00000496049 SOGA1O94964 1423 aa25.02■■□□□ 1.6
GAPDH-210ENST00000496049 SYNJ2O15056 1496 aa25.01■■□□□ 1.59
GAPDH-210ENST00000496049 ERCC6L2Q5T890 1561 aa25.01■■□□□ 1.59
GAPDH-210ENST00000496049 WDR97A6NE52 1622 aa24.99■■□□□ 1.59
GAPDH-210ENST00000496049 KDM4FA0A1W2PPD8 638 aa24.96■■□□□ 1.59
GAPDH-210ENST00000496049 GRIN2BQ13224 1484 aa24.95■■□□□ 1.58
GAPDH-210ENST00000496049 PBRM1Q86U86 1689 aa24.91■■□□□ 1.58
GAPDH-210ENST00000496049 ABCA10Q8WWZ4 1543 aa24.89■■□□□ 1.57
GAPDH-210ENST00000496049 EEA1Q15075 1411 aa24.84■■□□□ 1.57
GAPDH-210ENST00000496049 KIF27Q86VH2 1401 aa24.82■■□□□ 1.56
GAPDH-210ENST00000496049 CEP170Q5SW79 1584 aa24.8■■□□□ 1.56
GAPDH-210ENST00000496049 KDM6BO15054 1643 aa24.76■■□□□ 1.55
GAPDH-210ENST00000496049 ABCA5Q8WWZ7 1642 aa24.76■■□□□ 1.55
GAPDH-210ENST00000496049 FAM69CQ0P6D2 419 aa24.7■■□□□ 1.54
GAPDH-210ENST00000496049 RUSC2Q8N2Y8 1516 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms