RNA–Protein interactions for RNA: ENST00000640414.1

MECP2-226, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5 BASIC

Gene MECP2, Length 897 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-226ENST00000640414 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
MECP2-226ENST00000640414 ABCC9O60706 1549 aa27.49■■□□□ 1.99
MECP2-226ENST00000640414 CCDC180Q9P1Z9 1646 aa26.83■■□□□ 1.88
MECP2-226ENST00000640414 DNAJC5BQ9UF47 199 aa26.4■■□□□ 1.82
MECP2-226ENST00000640414 RB1CC1Q8TDY2 1594 aa25.85■■□□□ 1.73
MECP2-226ENST00000640414 NACADO15069 1562 aa25.52■■□□□ 1.68
MECP2-226ENST00000640414 PABPN1Q86U42 306 aaKnown RBP eCLIP25.49■■□□□ 1.67
MECP2-226ENST00000640414 UNC13AQ9UPW8 1703 aa25.29■■□□□ 1.64
MECP2-226ENST00000640414 DCAF8L2P0C7V8 631 aa25.23■■□□□ 1.63
MECP2-226ENST00000640414 BICRAQ9NZM4 1560 aa25.16■■□□□ 1.62
MECP2-226ENST00000640414 MYO15BQ96JP2 1530 aa24.94■■□□□ 1.58
MECP2-226ENST00000640414 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.56
MECP2-226ENST00000640414 CC2D2AQ9P2K1 1620 aa24.8■■□□□ 1.56
MECP2-226ENST00000640414 SHROOM4Q9ULL8 1493 aa24.7■■□□□ 1.55
MECP2-226ENST00000640414 DNAJC5Q9H3Z4 198 aa24.69■■□□□ 1.54
MECP2-226ENST00000640414 EIF4G1Q04637 1599 aaKnown RBP24.59■■□□□ 1.53
MECP2-226ENST00000640414 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
MECP2-226ENST00000640414 DCAF1Q9Y4B6 1507 aa24.38■■□□□ 1.49
MECP2-226ENST00000640414 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
MECP2-226ENST00000640414 CUX2O14529 1486 aa23.94■■□□□ 1.42
MECP2-226ENST00000640414 ERCC6Q03468 1493 aa23.75■■□□□ 1.39
MECP2-226ENST00000640414 NCAPD3P42695 1498 aa23.57■■□□□ 1.36
MECP2-226ENST00000640414 NESP48681 1621 aa23.44■■□□□ 1.34
MECP2-226ENST00000640414 ATAD2BQ9ULI0 1458 aa23.42■■□□□ 1.34
MECP2-226ENST00000640414 HMGXB3Q12766 1538 aa23.33■■□□□ 1.33
MECP2-226ENST00000640414 THOC2Q8NI27 1593 aaKnown RBP23.33■■□□□ 1.33
MECP2-226ENST00000640414 TRIM41Q8WV44 630 aa23.33■■□□□ 1.33
MECP2-226ENST00000640414 SMARCA2P51531 1590 aa23.29■■□□□ 1.32
MECP2-226ENST00000640414 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
MECP2-226ENST00000640414 BAZ1BQ9UIG0 1483 aaKnown RBP23.14■■□□□ 1.29
MECP2-226ENST00000640414 LAMC3Q9Y6N6 1575 aa23.14■■□□□ 1.29
MECP2-226ENST00000640414 KIF21AQ7Z4S6 1674 aa23.11■■□□□ 1.29
MECP2-226ENST00000640414 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
MECP2-226ENST00000640414 PEG3Q9GZU2 1588 aa23■■□□□ 1.27
MECP2-226ENST00000640414 BAZ1AQ9NRL2 1556 aaPredicted RBP23■■□□□ 1.27
MECP2-226ENST00000640414 MRC2Q9UBG0 1479 aa22.87■■□□□ 1.25
MECP2-226ENST00000640414 WDR62O43379 1518 aa22.86■■□□□ 1.25
MECP2-226ENST00000640414 CADPSQ9ULU8 1353 aa22.81■■□□□ 1.24
MECP2-226ENST00000640414 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
MECP2-226ENST00000640414 OSCARQ8IYS5 282 aa22.73■■□□□ 1.23
MECP2-226ENST00000640414 CEP164Q9UPV0 1460 aa22.64■■□□□ 1.21
MECP2-226ENST00000640414 FANCD2Q9BXW9 1451 aa22.57■■□□□ 1.2
MECP2-226ENST00000640414 RIMBP3CA6NJZ7 1639 aa22.53■■□□□ 1.2
MECP2-226ENST00000640414 RIMBP3BA6NNM3 1639 aa22.53■■□□□ 1.2
MECP2-226ENST00000640414 RIMBP3Q9UFD9 1639 aa22.53■■□□□ 1.2
MECP2-226ENST00000640414 WIZO95785 1651 aa22.49■■□□□ 1.19
MECP2-226ENST00000640414 URB2Q14146 1524 aaKnown RBP22.44■■□□□ 1.18
MECP2-226ENST00000640414 CFTRP13569 1480 aa22.42■■□□□ 1.18
MECP2-226ENST00000640414 ARHGEF11O15085 1522 aa22.4■■□□□ 1.18
MECP2-226ENST00000640414 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
MECP2-226ENST00000640414 CYB5RLQ6IPT4 315 aa22.25■■□□□ 1.15
MECP2-226ENST00000640414 IFT140Q96RY7 1462 aa22.22■■□□□ 1.15
MECP2-226ENST00000640414 TRHP20396 242 aaPredicted RBP22.21■■□□□ 1.15
MECP2-226ENST00000640414 TOP2AP11388 1531 aaKnown RBP22.15■■□□□ 1.14
MECP2-226ENST00000640414 PRDM2Q13029 1718 aa22.14■■□□□ 1.13
MECP2-226ENST00000640414 ARAP1Q96P48 1450 aa22.13■■□□□ 1.13
MECP2-226ENST00000640414 EIF4G3O43432 1585 aaKnown RBP22.11■■□□□ 1.13
MECP2-226ENST00000640414 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
MECP2-226ENST00000640414 TOPBP1Q92547 1522 aa22.07■■□□□ 1.12
MECP2-226ENST00000640414 CHD1O14646 1710 aa22.07■■□□□ 1.12
MECP2-226ENST00000640414 AEBP2Q6ZN18 517 aaPredicted RBP22.03■■□□□ 1.12
MECP2-226ENST00000640414 AQRO60306 1485 aaKnown RBP eCLIP21.98■■□□□ 1.11
MECP2-226ENST00000640414 ABCC8Q09428 1581 aa21.95■■□□□ 1.1
MECP2-226ENST00000640414 FBLN2P98095 1184 aa21.94■■□□□ 1.1
MECP2-226ENST00000640414 TARBP1Q13395 1621 aaKnown RBP21.94■■□□□ 1.1
MECP2-226ENST00000640414 DNMBPQ6XZF7 1577 aa21.92■■□□□ 1.1
MECP2-226ENST00000640414 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
MECP2-226ENST00000640414 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
MECP2-226ENST00000640414 CLASP1Q7Z460 1538 aa21.8■■□□□ 1.08
MECP2-226ENST00000640414 RAD54L2Q9Y4B4 1467 aa21.75■■□□□ 1.07
MECP2-226ENST00000640414 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
MECP2-226ENST00000640414 SNAPC4Q5SXM2 1469 aa21.73■■□□□ 1.07
MECP2-226ENST00000640414 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
MECP2-226ENST00000640414 SOGA1O94964 1423 aa21.67■■□□□ 1.06
MECP2-226ENST00000640414 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
MECP2-226ENST00000640414 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
MECP2-226ENST00000640414 MAGI1Q96QZ7 1491 aaPredicted RBP21.63■■□□□ 1.05
MECP2-226ENST00000640414 GAPVD1Q14C86 1478 aa21.61■■□□□ 1.05
MECP2-226ENST00000640414 SYNJ2O15056 1496 aa21.58■■□□□ 1.04
MECP2-226ENST00000640414 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.04
MECP2-226ENST00000640414 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
MECP2-226ENST00000640414 CUX1P39880 1505 aa21.46■■□□□ 1.03
MECP2-226ENST00000640414 PBRM1Q86U86 1689 aa21.45■■□□□ 1.02
MECP2-226ENST00000640414 ERCC6L2Q5T890 1561 aa21.44■■□□□ 1.02
MECP2-226ENST00000640414 KIF13AQ9H1H9 1805 aa21.34■■□□□ 1.01
MECP2-226ENST00000640414 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1
MECP2-226ENST00000640414 CEP170Q5SW79 1584 aa21.32■■□□□ 1
MECP2-226ENST00000640414 GRIN2AQ12879 1464 aa21.3■■□□□ 1
MECP2-226ENST00000640414 ABCA10Q8WWZ4 1543 aa21.28■■□□□ 1
MECP2-226ENST00000640414 NUP160Q12769 1436 aa21.26■□□□□ 0.99
MECP2-226ENST00000640414 SHROOM2Q13796 1616 aa21.25■□□□□ 0.99
MECP2-226ENST00000640414 ADAMTS12P58397 1594 aa21.21■□□□□ 0.99
MECP2-226ENST00000640414 ILDR1Q86SU0 546 aaPredicted RBP21.19■□□□□ 0.98
MECP2-226ENST00000640414 KDM4FA0A1W2PPD8 638 aa21.15■□□□□ 0.98
MECP2-226ENST00000640414 ABCC10Q5T3U5 1492 aa21.13■□□□□ 0.97
MECP2-226ENST00000640414 FAM69CQ0P6D2 419 aa21.12■□□□□ 0.97
MECP2-226ENST00000640414 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
MECP2-226ENST00000640414 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
MECP2-226ENST00000640414 DIP2BQ9P265 1576 aa21.06■□□□□ 0.96
MECP2-226ENST00000640414 MAPKBP1O60336 1514 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms