RNA–Protein interactions for RNA: ENST00000622433.4

MECP2-213, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5 BASIC

Gene MECP2, Length 1,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-213ENST00000622433 NISCHQ9Y2I1 1504 aa32.55■■■□□ 2.8
MECP2-213ENST00000622433 CCDC180Q9P1Z9 1646 aa28.87■■■□□ 2.21
MECP2-213ENST00000622433 ABCC9O60706 1549 aa27.98■■■□□ 2.07
MECP2-213ENST00000622433 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
MECP2-213ENST00000622433 NACADO15069 1562 aa27.09■■□□□ 1.93
MECP2-213ENST00000622433 RB1CC1Q8TDY2 1594 aa27.06■■□□□ 1.92
MECP2-213ENST00000622433 MYO15BQ96JP2 1530 aa27.04■■□□□ 1.92
MECP2-213ENST00000622433 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
MECP2-213ENST00000622433 DCAF8L2P0C7V8 631 aa26.98■■□□□ 1.91
MECP2-213ENST00000622433 UNC13AQ9UPW8 1703 aa26.4■■□□□ 1.82
MECP2-213ENST00000622433 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
MECP2-213ENST00000622433 BICRAQ9NZM4 1560 aa26.23■■□□□ 1.79
MECP2-213ENST00000622433 PABPN1Q86U42 306 aaKnown RBP eCLIP26.14■■□□□ 1.78
MECP2-213ENST00000622433 SHROOM4Q9ULL8 1493 aa26.04■■□□□ 1.76
MECP2-213ENST00000622433 EIF4G1Q04637 1599 aaKnown RBP25.52■■□□□ 1.68
MECP2-213ENST00000622433 DNAJC5BQ9UF47 199 aa25.48■■□□□ 1.67
MECP2-213ENST00000622433 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
MECP2-213ENST00000622433 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
MECP2-213ENST00000622433 BAZ1AQ9NRL2 1556 aaPredicted RBP25.22■■□□□ 1.63
MECP2-213ENST00000622433 SMARCA4P51532 1647 aa25.2■■□□□ 1.62
MECP2-213ENST00000622433 MROH2BQ7Z745 1585 aa25.05■■□□□ 1.6
MECP2-213ENST00000622433 ATAD2BQ9ULI0 1458 aa25.02■■□□□ 1.6
MECP2-213ENST00000622433 SMARCA2P51531 1590 aa25.01■■□□□ 1.59
MECP2-213ENST00000622433 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
MECP2-213ENST00000622433 PEG3Q9GZU2 1588 aa24.99■■□□□ 1.59
MECP2-213ENST00000622433 HMGXB3Q12766 1538 aa24.91■■□□□ 1.58
MECP2-213ENST00000622433 RSF1Q96T23 1441 aaPredicted RBP24.85■■□□□ 1.57
MECP2-213ENST00000622433 BAZ1BQ9UIG0 1483 aaKnown RBP24.81■■□□□ 1.56
MECP2-213ENST00000622433 WIZO95785 1651 aa24.78■■□□□ 1.56
MECP2-213ENST00000622433 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
MECP2-213ENST00000622433 LAMC3Q9Y6N6 1575 aa24.3■■□□□ 1.48
MECP2-213ENST00000622433 SUPT5HO00267 1087 aaKnown RBP24.28■■□□□ 1.48
MECP2-213ENST00000622433 NESP48681 1621 aa24.27■■□□□ 1.48
MECP2-213ENST00000622433 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
MECP2-213ENST00000622433 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
MECP2-213ENST00000622433 CFTRP13569 1480 aa24.17■■□□□ 1.46
MECP2-213ENST00000622433 PDS5BQ9NTI5 1447 aa24.12■■□□□ 1.45
MECP2-213ENST00000622433 ERCC6Q03468 1493 aa24.11■■□□□ 1.45
MECP2-213ENST00000622433 KIF21AQ7Z4S6 1674 aa24■■□□□ 1.43
MECP2-213ENST00000622433 PRDM2Q13029 1718 aa24■■□□□ 1.43
MECP2-213ENST00000622433 FANCD2Q9BXW9 1451 aa23.97■■□□□ 1.43
MECP2-213ENST00000622433 CEP164Q9UPV0 1460 aa23.93■■□□□ 1.42
MECP2-213ENST00000622433 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
MECP2-213ENST00000622433 MRC2Q9UBG0 1479 aa23.86■■□□□ 1.41
MECP2-213ENST00000622433 CUX2O14529 1486 aa23.84■■□□□ 1.41
MECP2-213ENST00000622433 WDR62O43379 1518 aa23.79■■□□□ 1.4
MECP2-213ENST00000622433 URB2Q14146 1524 aaKnown RBP23.72■■□□□ 1.39
MECP2-213ENST00000622433 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
MECP2-213ENST00000622433 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
MECP2-213ENST00000622433 TOPBP1Q92547 1522 aa23.62■■□□□ 1.37
MECP2-213ENST00000622433 CUX1P39880 1505 aa23.5■■□□□ 1.35
MECP2-213ENST00000622433 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
MECP2-213ENST00000622433 IFT140Q96RY7 1462 aa23.43■■□□□ 1.34
MECP2-213ENST00000622433 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
MECP2-213ENST00000622433 FGD5Q6ZNL6 1462 aa23.39■■□□□ 1.34
MECP2-213ENST00000622433 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
MECP2-213ENST00000622433 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
MECP2-213ENST00000622433 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
MECP2-213ENST00000622433 TARBP1Q13395 1621 aaKnown RBP23.35■■□□□ 1.33
MECP2-213ENST00000622433 SOGA1O94964 1423 aa23.32■■□□□ 1.32
MECP2-213ENST00000622433 RAD54L2Q9Y4B4 1467 aa23.29■■□□□ 1.32
MECP2-213ENST00000622433 ZNF608Q9ULD9 1512 aaPredicted RBP23.27■■□□□ 1.32
MECP2-213ENST00000622433 WDR97A6NE52 1622 aa23.22■■□□□ 1.31
MECP2-213ENST00000622433 EIF4G3O43432 1585 aaKnown RBP23.21■■□□□ 1.31
MECP2-213ENST00000622433 ABCA10Q8WWZ4 1543 aa23.2■■□□□ 1.3
MECP2-213ENST00000622433 AQRO60306 1485 aaKnown RBP eCLIP23.16■■□□□ 1.3
MECP2-213ENST00000622433 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.29
MECP2-213ENST00000622433 ABCA5Q8WWZ7 1642 aa23.09■■□□□ 1.29
MECP2-213ENST00000622433 GAPVD1Q14C86 1478 aa23.06■■□□□ 1.28
MECP2-213ENST00000622433 GRIN2BQ13224 1484 aa23.05■■□□□ 1.28
MECP2-213ENST00000622433 PBRM1Q86U86 1689 aa23■■□□□ 1.27
MECP2-213ENST00000622433 MAGI1Q96QZ7 1491 aaPredicted RBP22.98■■□□□ 1.27
MECP2-213ENST00000622433 SNAPC4Q5SXM2 1469 aa22.97■■□□□ 1.27
MECP2-213ENST00000622433 TRIM41Q8WV44 630 aa22.96■■□□□ 1.27
MECP2-213ENST00000622433 ERICH3Q5RHP9 1530 aa22.93■■□□□ 1.26
MECP2-213ENST00000622433 KIF27Q86VH2 1401 aa22.92■■□□□ 1.26
MECP2-213ENST00000622433 SYNJ2O15056 1496 aa22.87■■□□□ 1.25
MECP2-213ENST00000622433 CHD1O14646 1710 aa22.85■■□□□ 1.25
MECP2-213ENST00000622433 ADAMTS12P58397 1594 aa22.85■■□□□ 1.25
MECP2-213ENST00000622433 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.25
MECP2-213ENST00000622433 OSCARQ8IYS5 282 aa22.83■■□□□ 1.25
MECP2-213ENST00000622433 DNAJC5Q9H3Z4 198 aa22.83■■□□□ 1.25
MECP2-213ENST00000622433 FHAD1B1AJZ9 1412 aa22.82■■□□□ 1.24
MECP2-213ENST00000622433 IGF1RP08069 1367 aa22.8■■□□□ 1.24
MECP2-213ENST00000622433 CHMP7Q8WUX9 453 aaPredicted RBP22.8■■□□□ 1.24
MECP2-213ENST00000622433 FBLN2P98095 1184 aa22.79■■□□□ 1.24
MECP2-213ENST00000622433 CUL7Q14999 1698 aa22.76■■□□□ 1.23
MECP2-213ENST00000622433 GRIN2AQ12879 1464 aa22.74■■□□□ 1.23
MECP2-213ENST00000622433 RUSC2Q8N2Y8 1516 aa22.73■■□□□ 1.23
MECP2-213ENST00000622433 CARMIL1Q5VZK9 1371 aa22.66■■□□□ 1.22
MECP2-213ENST00000622433 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
MECP2-213ENST00000622433 NUP160Q12769 1436 aa22.65■■□□□ 1.22
MECP2-213ENST00000622433 EEA1Q15075 1411 aa22.65■■□□□ 1.22
MECP2-213ENST00000622433 CEP170Q5SW79 1584 aa22.61■■□□□ 1.21
MECP2-213ENST00000622433 RAPGEF2Q9Y4G8 1499 aa22.57■■□□□ 1.2
MECP2-213ENST00000622433 PRXQ9BXM0 1461 aa22.55■■□□□ 1.2
MECP2-213ENST00000622433 CSRNP3Q8WYN3 585 aa22.53■■□□□ 1.2
MECP2-213ENST00000622433 ARHGEF11O15085 1522 aa22.49■■□□□ 1.19
MECP2-213ENST00000622433 KIAA0586Q9BVV6 1533 aa22.48■■□□□ 1.19
MECP2-213ENST00000622433 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms