RNA–Protein interactions for RNA: ENST00000488411.1

ZC3H11A-210, Transcript of zinc finger CCCH-type containing 11A, humanhuman

TSL 2

Gene ZC3H11A, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H11A-210ENST00000488411 AEBP2Q6ZN18 517 aaPredicted RBP29.28■■■□□ 2.28
ZC3H11A-210ENST00000488411 CHIC1Q5VXU3 224 aa27.54■■■□□ 2
ZC3H11A-210ENST00000488411 SENP3Q9H4L4 574 aaPredicted RBP25.06■■□□□ 1.6
ZC3H11A-210ENST00000488411 PHF23Q9BUL5 403 aaPredicted RBP24.67■■□□□ 1.54
ZC3H11A-210ENST00000488411 FOXD1Q16676 465 aa23.36■■□□□ 1.33
ZC3H11A-210ENST00000488411 MSH5O43196 834 aa22.02■■□□□ 1.12
ZC3H11A-210ENST00000488411 POTEDQ86YR6 584 aa21.96■■□□□ 1.11
ZC3H11A-210ENST00000488411 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
ZC3H11A-210ENST00000488411 PIAS4Q8N2W9 510 aaPredicted RBP21.75■■□□□ 1.07
ZC3H11A-210ENST00000488411 PPP6R1Q9UPN7 881 aa21.61■■□□□ 1.05
ZC3H11A-210ENST00000488411 ADRA2BP18089 450 aa21.51■■□□□ 1.03
ZC3H11A-210ENST00000488411 MAPK8IP2Q13387 824 aaPredicted RBP19.85■□□□□ 0.77
ZC3H11A-210ENST00000488411 DMRT2Q9Y5R5 561 aa19.82■□□□□ 0.76
ZC3H11A-210ENST00000488411 SCAF1Q9H7N4 1312 aaKnown RBP19.74■□□□□ 0.75
ZC3H11A-210ENST00000488411 PPP4R3CPQ6ZMV5 832 aa19.12■□□□□ 0.65
ZC3H11A-210ENST00000488411 CACNB1Q02641 598 aaPredicted RBP19.03■□□□□ 0.64
ZC3H11A-210ENST00000488411 HOXD11P31277 338 aaPredicted RBP18.99■□□□□ 0.63
ZC3H11A-210ENST00000488411 DCAF8L1A6NGE4 600 aa18.96■□□□□ 0.63
ZC3H11A-210ENST00000488411 CNKSR2Q8WXI2 1034 aa18.85■□□□□ 0.61
ZC3H11A-210ENST00000488411 RNF216Q9NWF9 866 aaPredicted RBP18.77■□□□□ 0.6
ZC3H11A-210ENST00000488411 RNF39Q9H2S5 420 aa18.74■□□□□ 0.59
ZC3H11A-210ENST00000488411 C1QBPQ07021 282 aaKnown RBP18.47■□□□□ 0.55
ZC3H11A-210ENST00000488411 DNAJC5BQ9UF47 199 aa18.45■□□□□ 0.54
ZC3H11A-210ENST00000488411 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
ZC3H11A-210ENST00000488411 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.05■□□□□ 0.488e-9■□□□□ 9.3
ZC3H11A-210ENST00000488411 NPM3O75607 178 aaKnown RBP18.03■□□□□ 0.48
ZC3H11A-210ENST00000488411 U3KPZ7 1027 aaPredicted RBP17.65■□□□□ 0.42
ZC3H11A-210ENST00000488411 SPINK5Q9NQ38 1064 aaPredicted RBP17.46■□□□□ 0.39
ZC3H11A-210ENST00000488411 CAPN15O75808 1086 aa17.45■□□□□ 0.38
ZC3H11A-210ENST00000488411 DSG3P32926 999 aa17.45■□□□□ 0.38
ZC3H11A-210ENST00000488411 KCNA4P22459 653 aa17.4■□□□□ 0.38
ZC3H11A-210ENST00000488411 SLC4A2P04920 1241 aa17.3■□□□□ 0.36
ZC3H11A-210ENST00000488411 APLP2Q06481 763 aa17.17■□□□□ 0.34
ZC3H11A-210ENST00000488411 POTEHQ6S545 545 aa17.15■□□□□ 0.34
ZC3H11A-210ENST00000488411 ZNF219Q9P2Y4 722 aaPredicted RBP17.1■□□□□ 0.33
ZC3H11A-210ENST00000488411 TRHP20396 242 aaPredicted RBP17.09■□□□□ 0.33
ZC3H11A-210ENST00000488411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
ZC3H11A-210ENST00000488411 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
ZC3H11A-210ENST00000488411 ABCB7O75027 752 aa17■□□□□ 0.31
ZC3H11A-210ENST00000488411 SAMD1Q6SPF0 538 aaPredicted RBP16.95■□□□□ 0.3
ZC3H11A-210ENST00000488411 MYCNP04198 464 aaPredicted RBP16.7■□□□□ 0.26
ZC3H11A-210ENST00000488411 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
ZC3H11A-210ENST00000488411 POLA2Q14181 598 aa16.59■□□□□ 0.25
ZC3H11A-210ENST00000488411 CHRDL2Q6WN34 429 aa16.4■□□□□ 0.22
ZC3H11A-210ENST00000488411 SLC4A1APQ9BWU0 796 aaKnown RBP16.37■□□□□ 0.21
ZC3H11A-210ENST00000488411 FOXD4L1Q9NU39 408 aa16.35■□□□□ 0.21
ZC3H11A-210ENST00000488411 ATF5Q9Y2D1 282 aaPredicted RBP16.31■□□□□ 0.2
ZC3H11A-210ENST00000488411 ZBTB12Q9Y330 459 aaPredicted RBP16.26■□□□□ 0.19
ZC3H11A-210ENST00000488411 AKT1S1Q96B36 256 aa16.23■□□□□ 0.19
ZC3H11A-210ENST00000488411 REM2Q8IYK8 340 aaPredicted RBP16.06■□□□□ 0.16
ZC3H11A-210ENST00000488411 OSCARQ8IYS5 282 aa16.05■□□□□ 0.16
ZC3H11A-210ENST00000488411 ZBTB22O15209 634 aa15.98■□□□□ 0.15
ZC3H11A-210ENST00000488411 PIP4P2Q8N4L2 257 aa15.94■□□□□ 0.14
ZC3H11A-210ENST00000488411 SP7Q8TDD2 431 aaPredicted RBP15.94■□□□□ 0.14
ZC3H11A-210ENST00000488411 ATXN8OSP0DMR3 200 aa15.93■□□□□ 0.14
ZC3H11A-210ENST00000488411 PITPNM1O00562 1244 aa15.88■□□□□ 0.13
ZC3H11A-210ENST00000488411 FXR2P51116 673 aaKnown RBP eCLIP15.83■□□□□ 0.122e-7■□□□□ 9.3
ZC3H11A-210ENST00000488411 SPDYE2BA6NHP3 402 aa15.73■□□□□ 0.11
ZC3H11A-210ENST00000488411 HAX1O00165 279 aa15.73■□□□□ 0.11
ZC3H11A-210ENST00000488411 SPDYE6P0CI01 402 aa15.73■□□□□ 0.11
ZC3H11A-210ENST00000488411 SPDYE2Q495Y8 402 aa15.73■□□□□ 0.11
ZC3H11A-210ENST00000488411 FBLN2P98095 1184 aa15.72■□□□□ 0.11
ZC3H11A-210ENST00000488411 MKRN4PQ13434 485 aaPredicted RBP15.55■□□□□ 0.08
ZC3H11A-210ENST00000488411 SPDYE1Q8NFV5 336 aaPredicted RBP15.52■□□□□ 0.08
ZC3H11A-210ENST00000488411 EVX2Q03828 476 aa15.5■□□□□ 0.07
ZC3H11A-210ENST00000488411 SSUH2Q9Y2M2 353 aa15.48■□□□□ 0.07
ZC3H11A-210ENST00000488411 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
ZC3H11A-210ENST00000488411 CLEC11AQ9Y240 323 aa15.47■□□□□ 0.07
ZC3H11A-210ENST00000488411 PRKAR2AP13861 404 aaKnown RBP15.46■□□□□ 0.07
ZC3H11A-210ENST00000488411 C19orf67A6NJJ6 358 aa15.34■□□□□ 0.05
ZC3H11A-210ENST00000488411 PABPN1Q86U42 306 aaKnown RBP eCLIP15.22■□□□□ 0.031e-7■■□□□ 12.5
ZC3H11A-210ENST00000488411 PRR29P0C7W0 189 aa15.2■□□□□ 0.02
ZC3H11A-210ENST00000488411 CHADLQ6NUI6 762 aa15.2■□□□□ 0.02
ZC3H11A-210ENST00000488411 GABBR2O75899 941 aa15.16■□□□□ 0.02
ZC3H11A-210ENST00000488411 CSRNP3Q8WYN3 585 aa14.99□□□□□ -0.01
ZC3H11A-210ENST00000488411 FARP1Q9Y4F1 1045 aaPredicted RBP14.98□□□□□ -0.01
ZC3H11A-210ENST00000488411 CD44P16070 742 aaKnown RBP14.95□□□□□ -0.02
ZC3H11A-210ENST00000488411 LHX8Q68G74 356 aa14.95□□□□□ -0.02
ZC3H11A-210ENST00000488411 CLCN6P51797 869 aa14.89□□□□□ -0.03
ZC3H11A-210ENST00000488411 POTEIP0CG38 1075 aa14.83□□□□□ -0.04
ZC3H11A-210ENST00000488411 STAG3Q9UJ98 1225 aa14.79□□□□□ -0.04
ZC3H11A-210ENST00000488411 CREBZFQ9NS37 354 aa14.76□□□□□ -0.05
ZC3H11A-210ENST00000488411 ZNF579Q8NAF0 562 aaKnown RBP14.74□□□□□ -0.05
ZC3H11A-210ENST00000488411 ZRANB1Q9UGI0 708 aa14.69□□□□□ -0.06
ZC3H11A-210ENST00000488411 DCBLD2Q96PD2 775 aa14.68□□□□□ -0.06
ZC3H11A-210ENST00000488411 NISCHQ9Y2I1 1504 aa14.67□□□□□ -0.06
ZC3H11A-210ENST00000488411 SPDYE4A6NLX3 237 aa14.67□□□□□ -0.06
ZC3H11A-210ENST00000488411 EHMT2Q96KQ7 1210 aa14.59□□□□□ -0.07
ZC3H11A-210ENST00000488411 GALR2O43603 387 aaPredicted RBP14.54□□□□□ -0.08
ZC3H11A-210ENST00000488411 PAK3O75914 559 aaPredicted RBP14.53□□□□□ -0.08
ZC3H11A-210ENST00000488411 NPM1P06748 294 aaKnown RBP eCLIP14.5□□□□□ -0.09
ZC3H11A-210ENST00000488411 MNX1P50219 401 aaPredicted RBP14.47□□□□□ -0.09
ZC3H11A-210ENST00000488411 PHF12Q96QT6 1004 aa14.45□□□□□ -0.1
ZC3H11A-210ENST00000488411 OTUD5Q96G74 571 aa14.35□□□□□ -0.11
ZC3H11A-210ENST00000488411 POTEB2H3BUK9 544 aa14.33□□□□□ -0.12
ZC3H11A-210ENST00000488411 PROM2Q8N271 834 aa14.31□□□□□ -0.12
ZC3H11A-210ENST00000488411 PELP1Q8IZL8 1130 aaKnown RBP14.3□□□□□ -0.12
ZC3H11A-210ENST00000488411 ASTLQ6HA08 431 aaPredicted RBP14.26□□□□□ -0.13
ZC3H11A-210ENST00000488411 MS4A3Q96HJ5 214 aa14.26□□□□□ -0.13
ZC3H11A-210ENST00000488411 ATMINO43313 823 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms