RNA–Protein interactions for RNA: ENST00000486037.1

SND1-213, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 695 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-213ENST00000486037 NISCHQ9Y2I1 1504 aa25.49■■□□□ 1.67
SND1-213ENST00000486037 ABCC9O60706 1549 aa23.88■■□□□ 1.41
SND1-213ENST00000486037 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
SND1-213ENST00000486037 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
SND1-213ENST00000486037 RB1CC1Q8TDY2 1594 aa22.32■■□□□ 1.16
SND1-213ENST00000486037 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
SND1-213ENST00000486037 NACADO15069 1562 aa21.99■■□□□ 1.11
SND1-213ENST00000486037 UNC13AQ9UPW8 1703 aa21.92■■□□□ 1.1
SND1-213ENST00000486037 BICRAQ9NZM4 1560 aa21.82■■□□□ 1.08
SND1-213ENST00000486037 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
SND1-213ENST00000486037 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
SND1-213ENST00000486037 CECR2Q9BXF3 1484 aa21.54■■□□□ 1.04
SND1-213ENST00000486037 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
SND1-213ENST00000486037 MYO15BQ96JP2 1530 aa21.45■■□□□ 1.02
SND1-213ENST00000486037 EIF4G1Q04637 1599 aaKnown RBP21.28■■□□□ 1
SND1-213ENST00000486037 SHROOM4Q9ULL8 1493 aa21.28■■□□□ 1
SND1-213ENST00000486037 SCRIBQ14160 1630 aa21.11■□□□□ 0.97
SND1-213ENST00000486037 ZCCHC6Q5VYS8 1495 aaKnown RBP21■□□□□ 0.95
SND1-213ENST00000486037 DCAF1Q9Y4B6 1507 aa20.95■□□□□ 0.94
SND1-213ENST00000486037 CUX2O14529 1486 aa20.76■□□□□ 0.91
SND1-213ENST00000486037 ERCC6Q03468 1493 aa20.58■□□□□ 0.89
SND1-213ENST00000486037 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
SND1-213ENST00000486037 NESP48681 1621 aa20.36■□□□□ 0.85
SND1-213ENST00000486037 NCAPD3P42695 1498 aa20.36■□□□□ 0.85
SND1-213ENST00000486037 THOC2Q8NI27 1593 aaKnown RBP20.24■□□□□ 0.83
SND1-213ENST00000486037 ATAD2BQ9ULI0 1458 aa20.24■□□□□ 0.83
SND1-213ENST00000486037 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
SND1-213ENST00000486037 SMARCA2P51531 1590 aa20.08■□□□□ 0.81
SND1-213ENST00000486037 SMARCA4P51532 1647 aa20.03■□□□□ 0.8
SND1-213ENST00000486037 KIF21AQ7Z4S6 1674 aa20.02■□□□□ 0.8
SND1-213ENST00000486037 LAMC3Q9Y6N6 1575 aa19.97■□□□□ 0.79
SND1-213ENST00000486037 BAZ1BQ9UIG0 1483 aaKnown RBP19.96■□□□□ 0.79
SND1-213ENST00000486037 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
SND1-213ENST00000486037 PEG3Q9GZU2 1588 aa19.82■□□□□ 0.76
SND1-213ENST00000486037 BAZ1AQ9NRL2 1556 aaPredicted RBP19.81■□□□□ 0.76
SND1-213ENST00000486037 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
SND1-213ENST00000486037 WDR62O43379 1518 aa19.77■□□□□ 0.76
SND1-213ENST00000486037 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
SND1-213ENST00000486037 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
SND1-213ENST00000486037 OSCARQ8IYS5 282 aa19.69■□□□□ 0.74
SND1-213ENST00000486037 RIMBP3CA6NJZ7 1639 aa19.6■□□□□ 0.73
SND1-213ENST00000486037 RIMBP3BA6NNM3 1639 aa19.6■□□□□ 0.73
SND1-213ENST00000486037 RIMBP3Q9UFD9 1639 aa19.6■□□□□ 0.73
SND1-213ENST00000486037 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
SND1-213ENST00000486037 FANCD2Q9BXW9 1451 aa19.5■□□□□ 0.71
SND1-213ENST00000486037 ARHGEF11O15085 1522 aa19.45■□□□□ 0.7
SND1-213ENST00000486037 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
SND1-213ENST00000486037 WIZO95785 1651 aa19.41■□□□□ 0.7
SND1-213ENST00000486037 CFTRP13569 1480 aa19.35■□□□□ 0.69
SND1-213ENST00000486037 CYB5RLQ6IPT4 315 aa19.34■□□□□ 0.69
SND1-213ENST00000486037 ZNF608Q9ULD9 1512 aaPredicted RBP19.33■□□□□ 0.68
SND1-213ENST00000486037 TRHP20396 242 aaPredicted RBP19.31■□□□□ 0.68
SND1-213ENST00000486037 ARAP1Q96P48 1450 aa19.25■□□□□ 0.67
SND1-213ENST00000486037 AEBP2Q6ZN18 517 aaPredicted RBP19.19■□□□□ 0.66
SND1-213ENST00000486037 IFT140Q96RY7 1462 aa19.19■□□□□ 0.66
SND1-213ENST00000486037 EIF4G3O43432 1585 aaKnown RBP19.14■□□□□ 0.65
SND1-213ENST00000486037 CHD1O14646 1710 aa19.12■□□□□ 0.65
SND1-213ENST00000486037 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
SND1-213ENST00000486037 TOPBP1Q92547 1522 aa19.07■□□□□ 0.64
SND1-213ENST00000486037 PRDM2Q13029 1718 aa19.05■□□□□ 0.64
SND1-213ENST00000486037 AQRO60306 1485 aaKnown RBP eCLIP19.04■□□□□ 0.649e-7■■■□□ 19
SND1-213ENST00000486037 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
SND1-213ENST00000486037 FBLN2P98095 1184 aa19■□□□□ 0.63
SND1-213ENST00000486037 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
SND1-213ENST00000486037 DNMBPQ6XZF7 1577 aa18.91■□□□□ 0.62
SND1-213ENST00000486037 CCDC88BA6NC98 1476 aa18.9■□□□□ 0.62
SND1-213ENST00000486037 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
SND1-213ENST00000486037 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
SND1-213ENST00000486037 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
SND1-213ENST00000486037 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
SND1-213ENST00000486037 SNAPC4Q5SXM2 1469 aa18.81■□□□□ 0.6
SND1-213ENST00000486037 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
SND1-213ENST00000486037 SYNJ1O43426 1573 aa18.75■□□□□ 0.59
SND1-213ENST00000486037 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
SND1-213ENST00000486037 CHMP7Q8WUX9 453 aaPredicted RBP18.71■□□□□ 0.59
SND1-213ENST00000486037 SOGA1O94964 1423 aa18.71■□□□□ 0.59
SND1-213ENST00000486037 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
SND1-213ENST00000486037 ERCC6L2Q5T890 1561 aa18.64■□□□□ 0.57
SND1-213ENST00000486037 SYNJ2O15056 1496 aa18.63■□□□□ 0.57
SND1-213ENST00000486037 FGD5Q6ZNL6 1462 aa18.62■□□□□ 0.57
SND1-213ENST00000486037 WDR97A6NE52 1622 aa18.6■□□□□ 0.57
SND1-213ENST00000486037 GRIN2BQ13224 1484 aa18.6■□□□□ 0.57
SND1-213ENST00000486037 CHIC1Q5VXU3 224 aa18.59■□□□□ 0.57
SND1-213ENST00000486037 ILDR1Q86SU0 546 aaPredicted RBP18.56■□□□□ 0.56
SND1-213ENST00000486037 CUX1P39880 1505 aa18.54■□□□□ 0.56
SND1-213ENST00000486037 KIF13AQ9H1H9 1805 aa18.51■□□□□ 0.55
SND1-213ENST00000486037 PBRM1Q86U86 1689 aa18.51■□□□□ 0.55
SND1-213ENST00000486037 CEP170Q5SW79 1584 aa18.45■□□□□ 0.54
SND1-213ENST00000486037 KDM4FA0A1W2PPD8 638 aa18.44■□□□□ 0.54
SND1-213ENST00000486037 ABCA5Q8WWZ7 1642 aa18.41■□□□□ 0.54
SND1-213ENST00000486037 GRIN2AQ12879 1464 aa18.39■□□□□ 0.53
SND1-213ENST00000486037 NUP160Q12769 1436 aa18.37■□□□□ 0.53
SND1-213ENST00000486037 SHROOM2Q13796 1616 aa18.36■□□□□ 0.53
SND1-213ENST00000486037 ABCA10Q8WWZ4 1543 aa18.35■□□□□ 0.53
SND1-213ENST00000486037 ADAMTS12P58397 1594 aa18.32■□□□□ 0.52
SND1-213ENST00000486037 FAM69CQ0P6D2 419 aa18.31■□□□□ 0.52
SND1-213ENST00000486037 ABCC10Q5T3U5 1492 aa18.3■□□□□ 0.52
SND1-213ENST00000486037 DIP2BQ9P265 1576 aa18.25■□□□□ 0.51
SND1-213ENST00000486037 PRG4Q92954 1404 aaPredicted RBP18.24■□□□□ 0.51
SND1-213ENST00000486037 KDM6BO15054 1643 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms