RNA–Protein interactions for RNA: ENST00000552388.1

CDK4-212, Transcript of cyclin dependent kinase 4, humanhuman

TSL 3

Gene CDK4, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-212ENST00000552388 NISCHQ9Y2I1 1504 aa31.63■■■□□ 2.65
CDK4-212ENST00000552388 CCDC180Q9P1Z9 1646 aa28.11■■■□□ 2.09
CDK4-212ENST00000552388 ABCC9O60706 1549 aa27.98■■■□□ 2.07
CDK4-212ENST00000552388 RB1CC1Q8TDY2 1594 aa26.66■■□□□ 1.86
CDK4-212ENST00000552388 NACADO15069 1562 aa26.47■■□□□ 1.83
CDK4-212ENST00000552388 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
CDK4-212ENST00000552388 ZCCHC6Q5VYS8 1495 aaKnown RBP26.4■■□□□ 1.82
CDK4-212ENST00000552388 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
CDK4-212ENST00000552388 DCAF1Q9Y4B6 1507 aa26.22■■□□□ 1.79
CDK4-212ENST00000552388 DCAF8L2P0C7V8 631 aa26.2■■□□□ 1.78
CDK4-212ENST00000552388 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
CDK4-212ENST00000552388 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
CDK4-212ENST00000552388 PABPN1Q86U42 306 aaKnown RBP eCLIP25.9■■□□□ 1.74
CDK4-212ENST00000552388 SHROOM4Q9ULL8 1493 aa25.71■■□□□ 1.71
CDK4-212ENST00000552388 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
CDK4-212ENST00000552388 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
CDK4-212ENST00000552388 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
CDK4-212ENST00000552388 CECR2Q9BXF3 1484 aa25.28■■□□□ 1.64
CDK4-212ENST00000552388 SMARCA4P51532 1647 aa24.53■■□□□ 1.52
CDK4-212ENST00000552388 BAZ1AQ9NRL2 1556 aaPredicted RBP24.51■■□□□ 1.51
CDK4-212ENST00000552388 DNAJC5Q9H3Z4 198 aa24.45■■□□□ 1.5
CDK4-212ENST00000552388 NCAPD3P42695 1498 aa24.45■■□□□ 1.5
CDK4-212ENST00000552388 MROH2BQ7Z745 1585 aa24.37■■□□□ 1.49
CDK4-212ENST00000552388 CUX2O14529 1486 aa24.35■■□□□ 1.49
CDK4-212ENST00000552388 SMARCA2P51531 1590 aa24.3■■□□□ 1.48
CDK4-212ENST00000552388 PEG3Q9GZU2 1588 aa24.3■■□□□ 1.48
CDK4-212ENST00000552388 ATAD2BQ9ULI0 1458 aa24.3■■□□□ 1.48
CDK4-212ENST00000552388 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
CDK4-212ENST00000552388 WIZO95785 1651 aa24.15■■□□□ 1.46
CDK4-212ENST00000552388 RSF1Q96T23 1441 aaPredicted RBP24.14■■□□□ 1.45
CDK4-212ENST00000552388 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
CDK4-212ENST00000552388 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
CDK4-212ENST00000552388 NESP48681 1621 aa24.02■■□□□ 1.44
CDK4-212ENST00000552388 THOC2Q8NI27 1593 aaKnown RBP23.98■■□□□ 1.43
CDK4-212ENST00000552388 LAMC3Q9Y6N6 1575 aa23.92■■□□□ 1.42
CDK4-212ENST00000552388 TOP2AP11388 1531 aaKnown RBP23.89■■□□□ 1.42
CDK4-212ENST00000552388 KIF21AQ7Z4S6 1674 aa23.76■■□□□ 1.39
CDK4-212ENST00000552388 PDS5BQ9NTI5 1447 aa23.68■■□□□ 1.38
CDK4-212ENST00000552388 SUPT5HO00267 1087 aaKnown RBP23.61■■□□□ 1.37
CDK4-212ENST00000552388 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
CDK4-212ENST00000552388 WDR62O43379 1518 aa23.59■■□□□ 1.37
CDK4-212ENST00000552388 CCDC88BA6NC98 1476 aa23.58■■□□□ 1.37
CDK4-212ENST00000552388 MRC2Q9UBG0 1479 aa23.55■■□□□ 1.36
CDK4-212ENST00000552388 CFTRP13569 1480 aa23.46■■□□□ 1.35
CDK4-212ENST00000552388 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
CDK4-212ENST00000552388 CEP164Q9UPV0 1460 aa23.38■■□□□ 1.33
CDK4-212ENST00000552388 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.33
CDK4-212ENST00000552388 URB2Q14146 1524 aaKnown RBP23.21■■□□□ 1.31
CDK4-212ENST00000552388 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
CDK4-212ENST00000552388 OSCARQ8IYS5 282 aa22.99■■□□□ 1.27
CDK4-212ENST00000552388 ABCC8Q09428 1581 aa22.97■■□□□ 1.27
CDK4-212ENST00000552388 DNMBPQ6XZF7 1577 aa22.96■■□□□ 1.27
CDK4-212ENST00000552388 IFT140Q96RY7 1462 aa22.95■■□□□ 1.26
CDK4-212ENST00000552388 TOPBP1Q92547 1522 aa22.94■■□□□ 1.26
CDK4-212ENST00000552388 ZNF608Q9ULD9 1512 aaPredicted RBP22.91■■□□□ 1.26
CDK4-212ENST00000552388 RIMBP3CA6NJZ7 1639 aa22.88■■□□□ 1.25
CDK4-212ENST00000552388 RIMBP3BA6NNM3 1639 aa22.88■■□□□ 1.25
CDK4-212ENST00000552388 RIMBP3Q9UFD9 1639 aa22.88■■□□□ 1.25
CDK4-212ENST00000552388 CUX1P39880 1505 aa22.85■■□□□ 1.25
CDK4-212ENST00000552388 EIF4G3O43432 1585 aaKnown RBP22.84■■□□□ 1.25
CDK4-212ENST00000552388 ARHGEF11O15085 1522 aa22.79■■□□□ 1.24
CDK4-212ENST00000552388 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
CDK4-212ENST00000552388 BIVM-ERCC5R4GMW8 1640 aa22.78■■□□□ 1.24
CDK4-212ENST00000552388 POLA1P09884 1462 aaPredicted RBP22.76■■□□□ 1.23
CDK4-212ENST00000552388 WRNQ14191 1432 aaPredicted RBP eCLIP22.75■■□□□ 1.23
CDK4-212ENST00000552388 TOP2BQ02880 1626 aa22.75■■□□□ 1.23
CDK4-212ENST00000552388 SYNJ1O43426 1573 aa22.73■■□□□ 1.23
CDK4-212ENST00000552388 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
CDK4-212ENST00000552388 CHD1O14646 1710 aa22.66■■□□□ 1.22
CDK4-212ENST00000552388 SOGA1O94964 1423 aa22.64■■□□□ 1.21
CDK4-212ENST00000552388 WDR97A6NE52 1622 aa22.64■■□□□ 1.21
CDK4-212ENST00000552388 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
CDK4-212ENST00000552388 AQRO60306 1485 aaKnown RBP eCLIP22.6■■□□□ 1.21
CDK4-212ENST00000552388 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
CDK4-212ENST00000552388 ABCA10Q8WWZ4 1543 aa22.53■■□□□ 1.2
CDK4-212ENST00000552388 CLASP1Q7Z460 1538 aa22.5■■□□□ 1.19
CDK4-212ENST00000552388 ABCA5Q8WWZ7 1642 aa22.46■■□□□ 1.19
CDK4-212ENST00000552388 TDRD9Q8NDG6 1382 aaKnown RBP22.45■■□□□ 1.18
CDK4-212ENST00000552388 PBRM1Q86U86 1689 aa22.44■■□□□ 1.18
CDK4-212ENST00000552388 SNAPC4Q5SXM2 1469 aa22.43■■□□□ 1.18
CDK4-212ENST00000552388 MAGI1Q96QZ7 1491 aaPredicted RBP22.42■■□□□ 1.18
CDK4-212ENST00000552388 GAPVD1Q14C86 1478 aa22.4■■□□□ 1.18
CDK4-212ENST00000552388 CYB5RLQ6IPT4 315 aa22.39■■□□□ 1.17
CDK4-212ENST00000552388 GRIN2BQ13224 1484 aa22.36■■□□□ 1.17
CDK4-212ENST00000552388 SYNJ2O15056 1496 aa22.33■■□□□ 1.16
CDK4-212ENST00000552388 ERICH3Q5RHP9 1530 aa22.28■■□□□ 1.16
CDK4-212ENST00000552388 FBLN2P98095 1184 aa22.27■■□□□ 1.16
CDK4-212ENST00000552388 KIF27Q86VH2 1401 aa22.26■■□□□ 1.15
CDK4-212ENST00000552388 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
CDK4-212ENST00000552388 CHIC1Q5VXU3 224 aa22.19■■□□□ 1.14
CDK4-212ENST00000552388 CHMP7Q8WUX9 453 aaPredicted RBP22.18■■□□□ 1.14
CDK4-212ENST00000552388 CUL7Q14999 1698 aa22.16■■□□□ 1.14
CDK4-212ENST00000552388 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.13
CDK4-212ENST00000552388 RUSC2Q8N2Y8 1516 aa22.13■■□□□ 1.13
CDK4-212ENST00000552388 TRHP20396 242 aaPredicted RBP22.13■■□□□ 1.13
CDK4-212ENST00000552388 IGF1RP08069 1367 aa22.12■■□□□ 1.13
CDK4-212ENST00000552388 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
CDK4-212ENST00000552388 NUP160Q12769 1436 aa22.08■■□□□ 1.13
CDK4-212ENST00000552388 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
CDK4-212ENST00000552388 CEP170Q5SW79 1584 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms