RNA–Protein interactions for RNA: ENST00000366998.4

NEK2-201, Transcript of NIMA related kinase 2, humanhuman

TSL 1 (best) BASIC

Gene NEK2, Length 1,865 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK2-201ENST00000366998 NISCHQ9Y2I1 1504 aa33.57■■■□□ 2.96
NEK2-201ENST00000366998 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
NEK2-201ENST00000366998 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
NEK2-201ENST00000366998 DCAF8L2P0C7V8 631 aa27.8■■■□□ 2.04
NEK2-201ENST00000366998 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.03
NEK2-201ENST00000366998 SHROOM4Q9ULL8 1493 aa27.6■■■□□ 2.01
NEK2-201ENST00000366998 ABCC9O60706 1549 aa27.57■■■□□ 2
NEK2-201ENST00000366998 MYO15BQ96JP2 1530 aa27.3■■□□□ 1.96
NEK2-201ENST00000366998 NACADO15069 1562 aa27.17■■□□□ 1.94
NEK2-201ENST00000366998 SCRIBQ14160 1630 aa26.98■■□□□ 1.91
NEK2-201ENST00000366998 RB1CC1Q8TDY2 1594 aa26.93■■□□□ 1.9
NEK2-201ENST00000366998 SUPT5HO00267 1087 aaKnown RBP26.61■■□□□ 1.85
NEK2-201ENST00000366998 UNC13AQ9UPW8 1703 aa26.47■■□□□ 1.83
NEK2-201ENST00000366998 BICRAQ9NZM4 1560 aa26.11■■□□□ 1.77
NEK2-201ENST00000366998 CECR2Q9BXF3 1484 aa26.1■■□□□ 1.77
NEK2-201ENST00000366998 RSF1Q96T23 1441 aaPredicted RBP26.09■■□□□ 1.77
NEK2-201ENST00000366998 PABPN1Q86U42 306 aaKnown RBP eCLIP26.03■■□□□ 1.76
NEK2-201ENST00000366998 MROH2BQ7Z745 1585 aa25.97■■□□□ 1.75
NEK2-201ENST00000366998 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
NEK2-201ENST00000366998 SMARCA4P51532 1647 aa25.82■■□□□ 1.72
NEK2-201ENST00000366998 WIZO95785 1651 aa25.81■■□□□ 1.72
NEK2-201ENST00000366998 TOP2AP11388 1531 aaKnown RBP25.49■■□□□ 1.67
NEK2-201ENST00000366998 CHIC1Q5VXU3 224 aa25.47■■□□□ 1.67
NEK2-201ENST00000366998 PEG3Q9GZU2 1588 aa25.43■■□□□ 1.66
NEK2-201ENST00000366998 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.65
NEK2-201ENST00000366998 SMARCA2P51531 1590 aa25.32■■□□□ 1.64
NEK2-201ENST00000366998 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
NEK2-201ENST00000366998 CCDC88BA6NC98 1476 aa25.23■■□□□ 1.63
NEK2-201ENST00000366998 BAZ1BQ9UIG0 1483 aaKnown RBP25.23■■□□□ 1.63
NEK2-201ENST00000366998 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
NEK2-201ENST00000366998 NCAPD3P42695 1498 aa25.04■■□□□ 1.6
NEK2-201ENST00000366998 TRIM41Q8WV44 630 aa24.96■■□□□ 1.59
NEK2-201ENST00000366998 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
NEK2-201ENST00000366998 ABCC8Q09428 1581 aa24.81■■□□□ 1.56
NEK2-201ENST00000366998 FAM9AQ8IZU1 332 aaPredicted RBP24.58■■□□□ 1.53
NEK2-201ENST00000366998 WRNQ14191 1432 aaPredicted RBP eCLIP24.58■■□□□ 1.53
NEK2-201ENST00000366998 LOC105371045A0A1W2PR82 267 aa24.55■■□□□ 1.52
NEK2-201ENST00000366998 CFTRP13569 1480 aa24.54■■□□□ 1.52
NEK2-201ENST00000366998 PRDM2Q13029 1718 aa24.52■■□□□ 1.52
NEK2-201ENST00000366998 SYNJ1O43426 1573 aa24.5■■□□□ 1.51
NEK2-201ENST00000366998 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
NEK2-201ENST00000366998 TOP2BQ02880 1626 aa24.37■■□□□ 1.49
NEK2-201ENST00000366998 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
NEK2-201ENST00000366998 SOGA1O94964 1423 aa24.33■■□□□ 1.49
NEK2-201ENST00000366998 EHMT2Q96KQ7 1210 aa24.29■■□□□ 1.48
NEK2-201ENST00000366998 CUX1P39880 1505 aa24.28■■□□□ 1.48
NEK2-201ENST00000366998 EEA1Q15075 1411 aa24.27■■□□□ 1.48
NEK2-201ENST00000366998 DNAJC5BQ9UF47 199 aa24.25■■□□□ 1.47
NEK2-201ENST00000366998 NESP48681 1621 aa24.24■■□□□ 1.47
NEK2-201ENST00000366998 RUSC2Q8N2Y8 1516 aa24.24■■□□□ 1.47
NEK2-201ENST00000366998 LAMC3Q9Y6N6 1575 aa24.22■■□□□ 1.47
NEK2-201ENST00000366998 FANCD2Q9BXW9 1451 aa24.21■■□□□ 1.47
NEK2-201ENST00000366998 CSRNP3Q8WYN3 585 aa24.15■■□□□ 1.46
NEK2-201ENST00000366998 CEP164Q9UPV0 1460 aa24.05■■□□□ 1.44
NEK2-201ENST00000366998 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
NEK2-201ENST00000366998 DNMBPQ6XZF7 1577 aa24.02■■□□□ 1.44
NEK2-201ENST00000366998 FGD5Q6ZNL6 1462 aa24■■□□□ 1.43
NEK2-201ENST00000366998 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
NEK2-201ENST00000366998 GOLGA3Q08378 1498 aa23.99■■□□□ 1.43
NEK2-201ENST00000366998 KIF21BO75037 1637 aa23.98■■□□□ 1.43
NEK2-201ENST00000366998 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
NEK2-201ENST00000366998 KIF27Q86VH2 1401 aa23.94■■□□□ 1.42
NEK2-201ENST00000366998 UBTFP17480 764 aaKnown RBP23.92■■□□□ 1.42
NEK2-201ENST00000366998 TNIKQ9UKE5 1360 aa23.9■■□□□ 1.42
NEK2-201ENST00000366998 URB2Q14146 1524 aaKnown RBP23.9■■□□□ 1.42
NEK2-201ENST00000366998 CUX2O14529 1486 aa23.88■■□□□ 1.41
NEK2-201ENST00000366998 POLA1P09884 1462 aaPredicted RBP23.85■■□□□ 1.41
NEK2-201ENST00000366998 RAPGEF2Q9Y4G8 1499 aa23.84■■□□□ 1.41
NEK2-201ENST00000366998 CEP162Q5TB80 1403 aa23.83■■□□□ 1.4
NEK2-201ENST00000366998 RAD54L2Q9Y4B4 1467 aa23.8■■□□□ 1.4
NEK2-201ENST00000366998 PRXQ9BXM0 1461 aa23.78■■□□□ 1.4
NEK2-201ENST00000366998 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
NEK2-201ENST00000366998 ABCA10Q8WWZ4 1543 aa23.75■■□□□ 1.39
NEK2-201ENST00000366998 MRC2Q9UBG0 1479 aa23.72■■□□□ 1.39
NEK2-201ENST00000366998 WDR97A6NE52 1622 aa23.71■■□□□ 1.39
NEK2-201ENST00000366998 IGF1RP08069 1367 aa23.68■■□□□ 1.38
NEK2-201ENST00000366998 ERCC6Q03468 1493 aa23.64■■□□□ 1.38
NEK2-201ENST00000366998 CLIP1P30622 1438 aa23.61■■□□□ 1.37
NEK2-201ENST00000366998 CARMIL1Q5VZK9 1371 aa23.6■■□□□ 1.37
NEK2-201ENST00000366998 TARBP1Q13395 1621 aaKnown RBP23.59■■□□□ 1.37
NEK2-201ENST00000366998 PCGF6Q9BYE7 350 aa23.58■■□□□ 1.37
NEK2-201ENST00000366998 ABCA5Q8WWZ7 1642 aa23.58■■□□□ 1.36
NEK2-201ENST00000366998 WDR62O43379 1518 aa23.58■■□□□ 1.36
NEK2-201ENST00000366998 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
NEK2-201ENST00000366998 CUL7Q14999 1698 aa23.55■■□□□ 1.36
NEK2-201ENST00000366998 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
NEK2-201ENST00000366998 GAPVD1Q14C86 1478 aa23.52■■□□□ 1.36
NEK2-201ENST00000366998 THOC2Q8NI27 1593 aaKnown RBP23.51■■□□□ 1.35
NEK2-201ENST00000366998 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
NEK2-201ENST00000366998 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
NEK2-201ENST00000366998 IFT140Q96RY7 1462 aa23.44■■□□□ 1.34
NEK2-201ENST00000366998 PBRM1Q86U86 1689 aa23.44■■□□□ 1.34
NEK2-201ENST00000366998 VPS8Q8N3P4 1428 aa23.41■■□□□ 1.34
NEK2-201ENST00000366998 AQRO60306 1485 aaKnown RBP eCLIP23.37■■□□□ 1.332e-6■■■□□ 15.6
NEK2-201ENST00000366998 ARAP1Q96P48 1450 aa23.36■■□□□ 1.33
NEK2-201ENST00000366998 CTTNBP2Q8WZ74 1663 aa23.35■■□□□ 1.33
NEK2-201ENST00000366998 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.33
NEK2-201ENST00000366998 ARHGAP35Q9NRY4 1499 aa23.32■■□□□ 1.32
NEK2-201ENST00000366998 GRIN2BQ13224 1484 aa23.31■■□□□ 1.32
NEK2-201ENST00000366998 EIF4G3O43432 1585 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms