RNA–Protein interactions for RNA: ENST00000551706.1

CDK4-208, Transcript of cyclin dependent kinase 4, humanhuman

TSL 1 (best)

Gene CDK4, Length 984 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-208ENST00000551706 NISCHQ9Y2I1 1504 aa41.77■■■■■ 4.28
CDK4-208ENST00000551706 ABCC9O60706 1549 aa38.03■■■■□ 3.68
CDK4-208ENST00000551706 CCDC180Q9P1Z9 1646 aa37.22■■■■□ 3.55
CDK4-208ENST00000551706 DNAJC5BQ9UF47 199 aa36.42■■■■□ 3.42
CDK4-208ENST00000551706 RB1CC1Q8TDY2 1594 aa35.85■■■■□ 3.33
CDK4-208ENST00000551706 NACADO15069 1562 aa35.39■■■■□ 3.26
CDK4-208ENST00000551706 PABPN1Q86U42 306 aaKnown RBP eCLIP35.28■■■■□ 3.24
CDK4-208ENST00000551706 DCAF8L2P0C7V8 631 aa35.06■■■■□ 3.2
CDK4-208ENST00000551706 UNC13AQ9UPW8 1703 aa35.01■■■■□ 3.19
CDK4-208ENST00000551706 ZCCHC6Q5VYS8 1495 aaKnown RBP34.82■■■■□ 3.16
CDK4-208ENST00000551706 BICRAQ9NZM4 1560 aa34.82■■■■□ 3.16
CDK4-208ENST00000551706 MYO15BQ96JP2 1530 aa34.73■■■■□ 3.15
CDK4-208ENST00000551706 DCAF1Q9Y4B6 1507 aa34.6■■■■□ 3.13
CDK4-208ENST00000551706 CECR2Q9BXF3 1484 aa34.36■■■■□ 3.09
CDK4-208ENST00000551706 CC2D2AQ9P2K1 1620 aa34.31■■■■□ 3.08
CDK4-208ENST00000551706 SHROOM4Q9ULL8 1493 aa34.28■■■■□ 3.08
CDK4-208ENST00000551706 DNAJC5Q9H3Z4 198 aa34.08■■■■□ 3.05
CDK4-208ENST00000551706 EIF4G1Q04637 1599 aaKnown RBP34.04■■■■□ 3.04
CDK4-208ENST00000551706 SCRIBQ14160 1630 aa33.86■■■■□ 3.01
CDK4-208ENST00000551706 CUX2O14529 1486 aa33.13■■■□□ 2.89
CDK4-208ENST00000551706 ERCC6Q03468 1493 aa32.92■■■□□ 2.86
CDK4-208ENST00000551706 NCAPD3P42695 1498 aa32.69■■■□□ 2.82
CDK4-208ENST00000551706 ATAD2BQ9ULI0 1458 aa32.46■■■□□ 2.79
CDK4-208ENST00000551706 NESP48681 1621 aa32.43■■■□□ 2.78
CDK4-208ENST00000551706 BAZ1AQ9NRL2 1556 aaPredicted RBP32.39■■■□□ 2.78
CDK4-208ENST00000551706 HMGXB3Q12766 1538 aa32.36■■■□□ 2.77
CDK4-208ENST00000551706 SMARCA4P51532 1647 aa32.36■■■□□ 2.77
CDK4-208ENST00000551706 SMARCA2P51531 1590 aa32.34■■■□□ 2.77
CDK4-208ENST00000551706 THOC2Q8NI27 1593 aaKnown RBP32.27■■■□□ 2.76
CDK4-208ENST00000551706 TRIM41Q8WV44 630 aa32.24■■■□□ 2.75
CDK4-208ENST00000551706 MROH2BQ7Z745 1585 aa32.15■■■□□ 2.74
CDK4-208ENST00000551706 BAZ1BQ9UIG0 1483 aaKnown RBP32.11■■■□□ 2.73
CDK4-208ENST00000551706 PEG3Q9GZU2 1588 aa32.08■■■□□ 2.73
CDK4-208ENST00000551706 LAMC3Q9Y6N6 1575 aa32.08■■■□□ 2.73
CDK4-208ENST00000551706 KIF21AQ7Z4S6 1674 aa31.99■■■□□ 2.71
CDK4-208ENST00000551706 PDS5BQ9NTI5 1447 aa31.94■■■□□ 2.7
CDK4-208ENST00000551706 RSF1Q96T23 1441 aaPredicted RBP31.86■■■□□ 2.69
CDK4-208ENST00000551706 WIZO95785 1651 aa31.78■■■□□ 2.68
CDK4-208ENST00000551706 MRC2Q9UBG0 1479 aa31.7■■■□□ 2.66
CDK4-208ENST00000551706 CADPSQ9ULU8 1353 aa31.66■■■□□ 2.66
CDK4-208ENST00000551706 WDR62O43379 1518 aa31.65■■■□□ 2.66
CDK4-208ENST00000551706 TOP2AP11388 1531 aaKnown RBP31.52■■■□□ 2.64
CDK4-208ENST00000551706 OSCARQ8IYS5 282 aa31.5■■■□□ 2.63
CDK4-208ENST00000551706 CEP164Q9UPV0 1460 aa31.41■■■□□ 2.62
CDK4-208ENST00000551706 FANCD2Q9BXW9 1451 aa31.29■■■□□ 2.6
CDK4-208ENST00000551706 RIMBP3CA6NJZ7 1639 aa31.16■■■□□ 2.58
CDK4-208ENST00000551706 RIMBP3BA6NNM3 1639 aa31.16■■■□□ 2.58
CDK4-208ENST00000551706 RIMBP3Q9UFD9 1639 aa31.16■■■□□ 2.58
CDK4-208ENST00000551706 CCDC88BA6NC98 1476 aa31.14■■■□□ 2.57
CDK4-208ENST00000551706 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
CDK4-208ENST00000551706 CFTRP13569 1480 aa31.12■■■□□ 2.57
CDK4-208ENST00000551706 URB2Q14146 1524 aaKnown RBP31.08■■■□□ 2.57
CDK4-208ENST00000551706 ARHGEF11O15085 1522 aa30.98■■■□□ 2.55
CDK4-208ENST00000551706 ZNF608Q9ULD9 1512 aaPredicted RBP30.83■■■□□ 2.53
CDK4-208ENST00000551706 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.52
CDK4-208ENST00000551706 IFT140Q96RY7 1462 aa30.82■■■□□ 2.52
CDK4-208ENST00000551706 PRDM2Q13029 1718 aa30.76■■■□□ 2.52
CDK4-208ENST00000551706 TRHP20396 242 aaPredicted RBP30.76■■■□□ 2.51
CDK4-208ENST00000551706 EIF4G3O43432 1585 aaKnown RBP30.62■■■□□ 2.49
CDK4-208ENST00000551706 ARAP1Q96P48 1450 aa30.61■■■□□ 2.49
CDK4-208ENST00000551706 TOPBP1Q92547 1522 aa30.61■■■□□ 2.49
CDK4-208ENST00000551706 CHD1O14646 1710 aa30.56■■■□□ 2.48
CDK4-208ENST00000551706 ABCC8Q09428 1581 aa30.5■■■□□ 2.47
CDK4-208ENST00000551706 AEBP2Q6ZN18 517 aaPredicted RBP30.49■■■□□ 2.47
CDK4-208ENST00000551706 AQRO60306 1485 aaKnown RBP eCLIP30.46■■■□□ 2.47
CDK4-208ENST00000551706 FBLN2P98095 1184 aa30.45■■■□□ 2.47
CDK4-208ENST00000551706 DNMBPQ6XZF7 1577 aa30.42■■■□□ 2.46
CDK4-208ENST00000551706 TARBP1Q13395 1621 aaKnown RBP30.39■■■□□ 2.46
CDK4-208ENST00000551706 POLA1P09884 1462 aaPredicted RBP30.24■■■□□ 2.43
CDK4-208ENST00000551706 CLASP1Q7Z460 1538 aa30.18■■■□□ 2.42
CDK4-208ENST00000551706 CUX1P39880 1505 aa30.17■■■□□ 2.42
CDK4-208ENST00000551706 RAD54L2Q9Y4B4 1467 aa30.15■■■□□ 2.42
CDK4-208ENST00000551706 TDRD9Q8NDG6 1382 aaKnown RBP30.15■■■□□ 2.42
CDK4-208ENST00000551706 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
CDK4-208ENST00000551706 SYNJ1O43426 1573 aa30.11■■■□□ 2.41
CDK4-208ENST00000551706 CHMP7Q8WUX9 453 aaPredicted RBP30.1■■■□□ 2.41
CDK4-208ENST00000551706 SOGA1O94964 1423 aa30.1■■■□□ 2.41
CDK4-208ENST00000551706 FGD5Q6ZNL6 1462 aa30.06■■■□□ 2.4
CDK4-208ENST00000551706 WRNQ14191 1432 aaPredicted RBP eCLIP30.06■■■□□ 2.4
CDK4-208ENST00000551706 WDR97A6NE52 1622 aa30.04■■■□□ 2.4
CDK4-208ENST00000551706 MAGI1Q96QZ7 1491 aaPredicted RBP30.01■■■□□ 2.4
CDK4-208ENST00000551706 TOP2BQ02880 1626 aa29.95■■■□□ 2.38
CDK4-208ENST00000551706 GAPVD1Q14C86 1478 aa29.94■■■□□ 2.38
CDK4-208ENST00000551706 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
CDK4-208ENST00000551706 GRIN2BQ13224 1484 aa29.93■■■□□ 2.38
CDK4-208ENST00000551706 BIVM-ERCC5R4GMW8 1640 aa29.93■■■□□ 2.38
CDK4-208ENST00000551706 ABCA10Q8WWZ4 1543 aa29.81■■■□□ 2.36
CDK4-208ENST00000551706 PBRM1Q86U86 1689 aa29.74■■■□□ 2.35
CDK4-208ENST00000551706 ERCC6L2Q5T890 1561 aa29.65■■■□□ 2.34
CDK4-208ENST00000551706 ABCA5Q8WWZ7 1642 aa29.63■■■□□ 2.33
CDK4-208ENST00000551706 GRIN2AQ12879 1464 aa29.55■■■□□ 2.32
CDK4-208ENST00000551706 CEP170Q5SW79 1584 aa29.54■■■□□ 2.32
CDK4-208ENST00000551706 KIF13AQ9H1H9 1805 aa29.5■■■□□ 2.31
CDK4-208ENST00000551706 NUP160Q12769 1436 aa29.47■■■□□ 2.31
CDK4-208ENST00000551706 ERICH3Q5RHP9 1530 aa29.46■■■□□ 2.31
CDK4-208ENST00000551706 KIF27Q86VH2 1401 aa29.45■■■□□ 2.31
CDK4-208ENST00000551706 SHROOM2Q13796 1616 aa29.44■■■□□ 2.3
CDK4-208ENST00000551706 ADAMTS12P58397 1594 aa29.41■■■□□ 2.3
CDK4-208ENST00000551706 FHAD1B1AJZ9 1412 aa29.37■■■□□ 2.29
CDK4-208ENST00000551706 IGF1RP08069 1367 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms