RNA–Protein interactions for RNA: ENST00000470723.5

SND1-209, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 4

Gene SND1, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-209ENST00000470723 NISCHQ9Y2I1 1504 aa30.13■■■□□ 2.41
SND1-209ENST00000470723 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
SND1-209ENST00000470723 ABCC9O60706 1549 aa25.68■■□□□ 1.7
SND1-209ENST00000470723 ZCCHC6Q5VYS8 1495 aaKnown RBP25.13■■□□□ 1.61
SND1-209ENST00000470723 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
SND1-209ENST00000470723 DCAF1Q9Y4B6 1507 aa25■■□□□ 1.59
SND1-209ENST00000470723 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
SND1-209ENST00000470723 NACADO15069 1562 aa24.98■■□□□ 1.59
SND1-209ENST00000470723 RB1CC1Q8TDY2 1594 aa24.88■■□□□ 1.57
SND1-209ENST00000470723 UNC13AQ9UPW8 1703 aa24.28■■□□□ 1.48
SND1-209ENST00000470723 SCRIBQ14160 1630 aa24.2■■□□□ 1.46
SND1-209ENST00000470723 BICRAQ9NZM4 1560 aa24.15■■□□□ 1.46
SND1-209ENST00000470723 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
SND1-209ENST00000470723 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
SND1-209ENST00000470723 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
SND1-209ENST00000470723 EIF4G1Q04637 1599 aaKnown RBP23.44■■□□□ 1.34
SND1-209ENST00000470723 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
SND1-209ENST00000470723 BAZ1AQ9NRL2 1556 aaPredicted RBP23.29■■□□□ 1.32
SND1-209ENST00000470723 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
SND1-209ENST00000470723 SMARCA4P51532 1647 aa23.25■■□□□ 1.31
SND1-209ENST00000470723 MROH2BQ7Z745 1585 aa23.19■■□□□ 1.3
SND1-209ENST00000470723 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
SND1-209ENST00000470723 NCAPD3P42695 1498 aa23.11■■□□□ 1.29
SND1-209ENST00000470723 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
SND1-209ENST00000470723 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
SND1-209ENST00000470723 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
SND1-209ENST00000470723 HMGXB3Q12766 1538 aa22.93■■□□□ 1.26
SND1-209ENST00000470723 WIZO95785 1651 aa22.92■■□□□ 1.26
SND1-209ENST00000470723 DNAJC5Q9H3Z4 198 aa22.88■■□□□ 1.25
SND1-209ENST00000470723 BAZ1BQ9UIG0 1483 aaKnown RBP22.87■■□□□ 1.25
SND1-209ENST00000470723 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
SND1-209ENST00000470723 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
SND1-209ENST00000470723 CCDC88BA6NC98 1476 aa22.5■■□□□ 1.19
SND1-209ENST00000470723 CADPSQ9ULU8 1353 aa22.43■■□□□ 1.18
SND1-209ENST00000470723 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
SND1-209ENST00000470723 CFTRP13569 1480 aa22.34■■□□□ 1.17
SND1-209ENST00000470723 NESP48681 1621 aa22.33■■□□□ 1.17
SND1-209ENST00000470723 PDS5BQ9NTI5 1447 aa22.23■■□□□ 1.15
SND1-209ENST00000470723 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
SND1-209ENST00000470723 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
SND1-209ENST00000470723 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
SND1-209ENST00000470723 KIF21AQ7Z4S6 1674 aa22.02■■□□□ 1.12
SND1-209ENST00000470723 CEP164Q9UPV0 1460 aa22.01■■□□□ 1.11
SND1-209ENST00000470723 MRC2Q9UBG0 1479 aa21.93■■□□□ 1.1
SND1-209ENST00000470723 THOC2Q8NI27 1593 aaKnown RBP21.9■■□□□ 1.1
SND1-209ENST00000470723 CUX2O14529 1486 aa21.87■■□□□ 1.09
SND1-209ENST00000470723 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
SND1-209ENST00000470723 WDR62O43379 1518 aa21.85■■□□□ 1.09
SND1-209ENST00000470723 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
SND1-209ENST00000470723 TOPBP1Q92547 1522 aa21.79■■□□□ 1.08
SND1-209ENST00000470723 DNMBPQ6XZF7 1577 aa21.76■■□□□ 1.07
SND1-209ENST00000470723 CUX1P39880 1505 aa21.73■■□□□ 1.07
SND1-209ENST00000470723 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
SND1-209ENST00000470723 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
SND1-209ENST00000470723 TOP2BQ02880 1626 aa21.63■■□□□ 1.05
SND1-209ENST00000470723 POLA1P09884 1462 aaPredicted RBP21.62■■□□□ 1.05
SND1-209ENST00000470723 BIVM-ERCC5R4GMW8 1640 aa21.61■■□□□ 1.05
SND1-209ENST00000470723 SYNJ1O43426 1573 aa21.6■■□□□ 1.05
SND1-209ENST00000470723 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
SND1-209ENST00000470723 IFT140Q96RY7 1462 aa21.58■■□□□ 1.05
SND1-209ENST00000470723 SOGA1O94964 1423 aa21.58■■□□□ 1.05
SND1-209ENST00000470723 TARBP1Q13395 1621 aaKnown RBP21.52■■□□□ 1.04
SND1-209ENST00000470723 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.03
SND1-209ENST00000470723 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
SND1-209ENST00000470723 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
SND1-209ENST00000470723 ZNF608Q9ULD9 1512 aaPredicted RBP21.43■■□□□ 1.02
SND1-209ENST00000470723 TDRD9Q8NDG6 1382 aaKnown RBP21.39■■□□□ 1.02
SND1-209ENST00000470723 WDR97A6NE52 1622 aa21.39■■□□□ 1.01
SND1-209ENST00000470723 AQRO60306 1485 aaKnown RBP eCLIP21.38■■□□□ 1.012e-9■■■■□ 20.8
SND1-209ENST00000470723 GAPVD1Q14C86 1478 aa21.3■■□□□ 1
SND1-209ENST00000470723 EIF4G3O43432 1585 aaKnown RBP21.29■■□□□ 1
SND1-209ENST00000470723 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
SND1-209ENST00000470723 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
SND1-209ENST00000470723 GRIN2BQ13224 1484 aa21.26■□□□□ 0.99
SND1-209ENST00000470723 IGF1RP08069 1367 aa21.22■□□□□ 0.99
SND1-209ENST00000470723 ERICH3Q5RHP9 1530 aa21.19■□□□□ 0.98
SND1-209ENST00000470723 MAGI1Q96QZ7 1491 aaPredicted RBP21.17■□□□□ 0.98
SND1-209ENST00000470723 RUSC2Q8N2Y8 1516 aa21.15■□□□□ 0.98
SND1-209ENST00000470723 PBRM1Q86U86 1689 aa21.14■□□□□ 0.97
SND1-209ENST00000470723 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
SND1-209ENST00000470723 FHAD1B1AJZ9 1412 aa21.09■□□□□ 0.97
SND1-209ENST00000470723 EEA1Q15075 1411 aa21.09■□□□□ 0.97
SND1-209ENST00000470723 SYNJ2O15056 1496 aa21.08■□□□□ 0.97
SND1-209ENST00000470723 CHMP7Q8WUX9 453 aaPredicted RBP21.08■□□□□ 0.97
SND1-209ENST00000470723 CSRNP3Q8WYN3 585 aa21.07■□□□□ 0.96
SND1-209ENST00000470723 OSCARQ8IYS5 282 aa21.05■□□□□ 0.96
SND1-209ENST00000470723 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
SND1-209ENST00000470723 FBLN2P98095 1184 aa21.02■□□□□ 0.96
SND1-209ENST00000470723 ADAMTS12P58397 1594 aa21.02■□□□□ 0.95
SND1-209ENST00000470723 CUL7Q14999 1698 aa20.99■□□□□ 0.95
SND1-209ENST00000470723 PRXQ9BXM0 1461 aa20.97■□□□□ 0.95
SND1-209ENST00000470723 GRIN2AQ12879 1464 aa20.96■□□□□ 0.95
SND1-209ENST00000470723 CHD1O14646 1710 aa20.95■□□□□ 0.94
SND1-209ENST00000470723 RAPGEF2Q9Y4G8 1499 aa20.93■□□□□ 0.94
SND1-209ENST00000470723 FAM9AQ8IZU1 332 aaPredicted RBP20.92■□□□□ 0.94
SND1-209ENST00000470723 NUP160Q12769 1436 aa20.91■□□□□ 0.94
SND1-209ENST00000470723 CEP170Q5SW79 1584 aa20.81■□□□□ 0.92
SND1-209ENST00000470723 CLASP1Q7Z460 1538 aa20.81■□□□□ 0.92
SND1-209ENST00000470723 KIAA0586Q9BVV6 1533 aa20.79■□□□□ 0.92
SND1-209ENST00000470723 KIF21BO75037 1637 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms