Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.415e-6■□□□□ 10.9
YBX3P16989 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.396e-6■□□□□ 10.9
YBX3P16989 SRPRA-202ENST00000527817 687 ntTSL 217.49■□□□□ 0.396e-6■□□□□ 10.9
YBX3P16989 NUPL2-204ENST00000437140 1285 ntTSL 517.28■□□□□ 0.366e-6■□□□□ 10.9
YBX3P16989 PDE4A-208ENST00000591971 836 ntTSL 516.84■□□□□ 0.296e-6■□□□□ 10.9
YBX3P16989 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.256e-6■□□□□ 10.9
YBX3P16989 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.246e-6■□□□□ 10.9
YBX3P16989 PHF20-201ENST00000339089 1997 ntTSL 216.37■□□□□ 0.216e-6■□□□□ 10.9
YBX3P16989 PHF20-202ENST00000374000 1814 ntTSL 1 (best)16.36■□□□□ 0.216e-6■□□□□ 10.9
YBX3P16989 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.97■□□□□ 0.156e-6■□□□□ 10.9
YBX3P16989 TMEM116-203ENST00000546537 599 ntTSL 515.85■□□□□ 0.136e-6■□□□□ 10.9
YBX3P16989 TMEM116-218ENST00000552839 511 ntTSL 415.74■□□□□ 0.116e-6■□□□□ 10.9
YBX3P16989 FAM98C-204ENST00000586372 4133 ntTSL 215.67■□□□□ 0.16e-6■□□□□ 10.9
YBX3P16989 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.086e-6■□□□□ 10.9
YBX3P16989 CYB5A-201ENST00000299438 718 ntTSL 2 BASIC15.48■□□□□ 0.076e-6■□□□□ 10.9
YBX3P16989 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.026e-6■□□□□ 10.9
YBX3P16989 CTNNB1-206ENST00000431914 634 ntTSL 415.18■□□□□ 0.026e-6■□□□□ 10.9
YBX3P16989 PHF20-211ENST00000481202 1635 ntTSL 1 (best)15.12■□□□□ 0.016e-6■□□□□ 10.9
YBX3P16989 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.056e-6■□□□□ 10.9
YBX3P16989 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.056e-6■□□□□ 10.9
YBX3P16989 NUPL2-209ENST00000487595 623 ntTSL 314.54□□□□□ -0.086e-6■□□□□ 10.9
YBX3P16989 NUPL2-201ENST00000258742 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.096e-6■□□□□ 10.9
YBX3P16989 TMEM116-215ENST00000552374 1408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.16e-6■□□□□ 10.9
YBX3P16989 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.116e-6■□□□□ 10.9
YBX3P16989 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.126e-6■□□□□ 10.9
YBX3P16989 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.156e-6■□□□□ 10.9
YBX3P16989 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.166e-6■□□□□ 10.9
YBX3P16989 PML-209ENST00000562086 2232 ntTSL 1 (best)13.96□□□□□ -0.176e-6■□□□□ 10.9
YBX3P16989 SRGAP2-210ENST00000604419 716 ntTSL 313.4□□□□□ -0.266e-6■□□□□ 10.9
YBX3P16989 NUPL2-205ENST00000438012 1653 ntTSL 213.28□□□□□ -0.286e-6■□□□□ 10.9
YBX3P16989 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.296e-6■□□□□ 10.9
YBX3P16989 FBXO11-209ENST00000492225 2216 ntTSL 1 (best)13.16□□□□□ -0.36e-6■□□□□ 10.9
YBX3P16989 TMEM116-207ENST00000549425 615 ntAPPRIS ALT2 TSL 313.11□□□□□ -0.316e-6■□□□□ 10.9
YBX3P16989 CTNNB1-208ENST00000441708 608 ntTSL 413.05□□□□□ -0.326e-6■□□□□ 10.9
YBX3P16989 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.336e-6■□□□□ 10.9
YBX3P16989 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.346e-6■□□□□ 10.9
YBX3P16989 PDE4A-207ENST00000590407 1770 ntTSL 1 (best)12.56□□□□□ -0.46e-6■□□□□ 10.9
YBX3P16989 SRGAP2-212ENST00000604925 1013 ntTSL 512.56□□□□□ -0.46e-6■□□□□ 10.9
YBX3P16989 PHF20-214ENST00000495338 568 ntTSL 412.5□□□□□ -0.416e-6■□□□□ 10.9
YBX3P16989 ZKSCAN5-202ENST00000394170 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.416e-6■□□□□ 10.9
YBX3P16989 SRPRA-205ENST00000531104 542 ntTSL 212.41□□□□□ -0.426e-6■□□□□ 10.9
YBX3P16989 TMEM116-217ENST00000552801 1397 ntTSL 511.89□□□□□ -0.516e-6■□□□□ 10.9
YBX3P16989 PNPLA4-201ENST00000381042 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.546e-6■□□□□ 10.9
YBX3P16989 SRGAP2-214ENST00000605476 2484 ntTSL 1 (best)11.33□□□□□ -0.66e-6■□□□□ 10.9
YBX3P16989 SRGAP2-215ENST00000605610 3212 ntTSL 2 BASIC11.2□□□□□ -0.626e-6■□□□□ 10.9
YBX3P16989 TMEM116-205ENST00000547878 1716 ntTSL 211.05□□□□□ -0.646e-6■□□□□ 10.9
YBX3P16989 TMEM116-201ENST00000355445 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.646e-6■□□□□ 10.9
YBX3P16989 SRGAP2-217ENST00000624873 4705 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.686e-6■□□□□ 10.9
YBX3P16989 TMEM116-213ENST00000550831 1446 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.696e-6■□□□□ 10.9
YBX3P16989 ZKSCAN5-204ENST00000454175 5626 ntTSL 1 (best)10.4□□□□□ -0.746e-6■□□□□ 10.9
YBX3P16989 TPP1-201ENST00000299427 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.786e-6■□□□□ 10.9
YBX3P16989 TPP1-215ENST00000533371 3536 ntTSL 1 (best) BASIC10.13□□□□□ -0.796e-6■□□□□ 10.9
YBX3P16989 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC9.99□□□□□ -0.816e-6■□□□□ 10.9
YBX3P16989 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.876e-6■□□□□ 10.9
YBX3P16989 ZKSCAN5-203ENST00000451158 3111 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.896e-6■□□□□ 10.9
YBX3P16989 TMEM116-209ENST00000550020 572 ntTSL 49.35□□□□□ -0.916e-6■□□□□ 10.9
YBX3P16989 CYB5A-207ENST00000583418 5913 ntTSL 29.33□□□□□ -0.926e-6■□□□□ 10.9
YBX3P16989 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC8.9□□□□□ -0.986e-6■□□□□ 10.9
YBX3P16989 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.996e-6■□□□□ 10.9
YBX3P16989 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.016e-6■□□□□ 10.9
YBX3P16989 TMEM116-214ENST00000551297 660 ntTSL 38.55□□□□□ -1.046e-6■□□□□ 10.9
YBX3P16989 FBXO11-202ENST00000403359 4055 ntTSL 1 (best) BASIC8.55□□□□□ -1.046e-6■□□□□ 10.9
YBX3P16989 NF1-207ENST00000468273 592 ntTSL 28.49□□□□□ -1.056e-6■□□□□ 10.9
YBX3P16989 CTNNB1-207ENST00000433400 596 ntTSL 48.19□□□□□ -1.16e-6■□□□□ 10.9
YBX3P16989 TMEM116-206ENST00000548283 3640 ntTSL 58.13□□□□□ -1.116e-6■□□□□ 10.9
YBX3P16989 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC8.06□□□□□ -1.126e-6■□□□□ 10.9
YBX3P16989 NF1-221ENST00000581790 1256 ntTSL 27.56□□□□□ -1.26e-6■□□□□ 10.9
YBX3P16989 NF1-208ENST00000471572 2028 ntTSL 27.51□□□□□ -1.216e-6■□□□□ 10.9
YBX3P16989 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.37□□□□□ -1.236e-6■□□□□ 10.9
YBX3P16989 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.246e-6■□□□□ 10.9
YBX3P16989 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.17□□□□□ -1.266e-6■□□□□ 10.9
YBX3P16989 BAZ1B-203ENST00000466844 827 ntTSL 47.01□□□□□ -1.296e-6■□□□□ 10.9
YBX3P16989 PHF20-213ENST00000486408 809 ntTSL 56.91□□□□□ -1.36e-6■□□□□ 10.9
YBX3P16989 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.346e-6■□□□□ 10.9
YBX3P16989 TMEM116-210ENST00000550037 640 ntAPPRIS ALT2 TSL 36.42□□□□□ -1.386e-6■□□□□ 10.9
YBX3P16989 PHF20-212ENST00000485604 446 ntTSL 36.37□□□□□ -1.396e-6■□□□□ 10.9
YBX3P16989 CTNNB1-209ENST00000450969 645 ntTSL 46.2□□□□□ -1.426e-6■□□□□ 10.9
YBX3P16989 FBXO11-210ENST00000493962 1986 ntTSL 26.06□□□□□ -1.446e-6■□□□□ 10.9
YBX3P16989 TMEM116-211ENST00000550233 571 ntAPPRIS ALT2 TSL 56.01□□□□□ -1.456e-6■□□□□ 10.9
YBX3P16989 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.56e-6■□□□□ 10.9
YBX3P16989 CTNNB1-205ENST00000426215 563 ntTSL 45.57□□□□□ -1.526e-6■□□□□ 10.9
YBX3P16989 AL139099.1-201ENST00000497398 403 ntBASIC5.25□□□□□ -1.576e-6■□□□□ 10.9
YBX3P16989 TMEM116-212ENST00000550800 718 ntAPPRIS ALT2 TSL 35.2□□□□□ -1.586e-6■□□□□ 10.9
YBX3P16989 ZMYM2-205ENST00000382883 5445 ntTSL 55.02□□□□□ -1.616e-6■□□□□ 10.9
YBX3P16989 NF1-218ENST00000577967 5799 nt4.84□□□□□ -1.636e-6■□□□□ 10.9
YBX3P16989 FBXO11-204ENST00000424163 560 ntTSL 44.7□□□□□ -1.666e-6■□□□□ 10.9
YBX3P16989 TMEM116-204ENST00000546962 319 ntAPPRIS ALT2 TSL 54.42□□□□□ -1.76e-6■□□□□ 10.9
YBX3P16989 ESD-204ENST00000471867 2410 ntTSL 23.91□□□□□ -1.786e-6■□□□□ 10.9
YBX3P16989 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.816e-6■□□□□ 10.9
YBX3P16989 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.946e-6■□□□□ 10.9
YBX3P16989 ZMYM2-201ENST00000382870 3456 ntTSL 1 (best)2.7□□□□□ -1.986e-6■□□□□ 10.9
YBX3P16989 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC7.99□□□□□ -1.132e-6■□□□□ 10.9
YBX3P16989 EXOC4-210ENST00000472020 492 ntTSL 411.75□□□□□ -0.531e-6■□□□□ 10.9
YBX3P16989 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.45■□□□□ 0.549e-8■□□□□ 10.9
YBX3P16989 URI1-204ENST00000570704 559 ntTSL 46.73□□□□□ -1.332e-9■□□□□ 10.9
YBX3P16989 URI1-207ENST00000574176 596 ntTSL 56.28□□□□□ -1.42e-9■□□□□ 10.9
YBX3P16989 URI1-212ENST00000576442 578 ntTSL 46.01□□□□□ -1.452e-9■□□□□ 10.9
YBX3P16989 SNRNP200-205ENST00000480835 540 ntTSL 217.37■□□□□ 0.371e-12■□□□□ 10.9
YBX3P16989 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC7.59□□□□□ -1.195e-7■□□□□ 10.9
YBX3P16989 DEPDC1B-202ENST00000453022 1569 ntTSL 2 BASIC12.3□□□□□ -0.446e-6■□□□□ 10.9
Retrieved 100 of 29,075 protein–RNA pairs in 246.9 ms