RNA–Protein interactions for RNA: ENST00000624873.3

SRGAP2-217, Transcript of SLIT-ROBO Rho GTPase activating protein 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SRGAP2, Length 4,705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP2-217ENST00000624873 NISCHQ9Y2I1 1504 aa19.09■□□□□ 0.65
SRGAP2-217ENST00000624873 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
SRGAP2-217ENST00000624873 SHROOM4Q9ULL8 1493 aa17.34■□□□□ 0.37
SRGAP2-217ENST00000624873 SUPT5HO00267 1087 aaKnown RBP17.32■□□□□ 0.36
SRGAP2-217ENST00000624873 ABCC9O60706 1549 aa16.65■□□□□ 0.26
SRGAP2-217ENST00000624873 FAM9AQ8IZU1 332 aaPredicted RBP16.46■□□□□ 0.23
SRGAP2-217ENST00000624873 EHMT2Q96KQ7 1210 aa16.41■□□□□ 0.22
SRGAP2-217ENST00000624873 APLP2Q06481 763 aa16.28■□□□□ 0.2
SRGAP2-217ENST00000624873 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
SRGAP2-217ENST00000624873 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
SRGAP2-217ENST00000624873 CCDC180Q9P1Z9 1646 aa16.05■□□□□ 0.16
SRGAP2-217ENST00000624873 RANGAP1P46060 587 aaPredicted RBP15.99■□□□□ 0.15
SRGAP2-217ENST00000624873 UBTFP17480 764 aaKnown RBP15.95■□□□□ 0.14
SRGAP2-217ENST00000624873 ATP1B4Q9UN42 357 aaPredicted RBP15.91■□□□□ 0.14
SRGAP2-217ENST00000624873 ZCCHC6Q5VYS8 1495 aaKnown RBP15.77■□□□□ 0.12
SRGAP2-217ENST00000624873 TTBK1Q5TCY1 1321 aaPredicted RBP15.74■□□□□ 0.11
SRGAP2-217ENST00000624873 SCRIBQ14160 1630 aa15.73■□□□□ 0.11
SRGAP2-217ENST00000624873 RB1CC1Q8TDY2 1594 aa15.72■□□□□ 0.11
SRGAP2-217ENST00000624873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
SRGAP2-217ENST00000624873 HNRNPUL2Q1KMD3 747 aaKnown RBP15.59■□□□□ 0.09
SRGAP2-217ENST00000624873 NACADO15069 1562 aa15.59■□□□□ 0.09
SRGAP2-217ENST00000624873 CHIC1Q5VXU3 224 aa15.49■□□□□ 0.07
SRGAP2-217ENST00000624873 MYT1LQ9UL68 1186 aa15.45■□□□□ 0.06
SRGAP2-217ENST00000624873 FBLN2P98095 1184 aa15.44■□□□□ 0.06
SRGAP2-217ENST00000624873 PCGF6Q9BYE7 350 aa15.38■□□□□ 0.05
SRGAP2-217ENST00000624873 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.04
SRGAP2-217ENST00000624873 CCER1Q8TC90 406 aaPredicted RBP15.26■□□□□ 0.03
SRGAP2-217ENST00000624873 LOC105371045A0A1W2PR82 267 aa15.25■□□□□ 0.03
SRGAP2-217ENST00000624873 PPARGC1BQ86YN6 1023 aaKnown RBP15.24■□□□□ 0.03
SRGAP2-217ENST00000624873 ITGAEP38570 1179 aa15.19■□□□□ 0.02
SRGAP2-217ENST00000624873 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
SRGAP2-217ENST00000624873 CSRNP3Q8WYN3 585 aa15.13■□□□□ 0.01
SRGAP2-217ENST00000624873 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
SRGAP2-217ENST00000624873 RSF1Q96T23 1441 aaPredicted RBP15.04■□□□□ -0
SRGAP2-217ENST00000624873 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
SRGAP2-217ENST00000624873 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
SRGAP2-217ENST00000624873 MYO15BQ96JP2 1530 aa15.02■□□□□ -0
SRGAP2-217ENST00000624873 NPM1P06748 294 aaKnown RBP eCLIP15.02□□□□□ -0.01
SRGAP2-217ENST00000624873 P3H3Q8IVL6 736 aa15□□□□□ -0.01
SRGAP2-217ENST00000624873 CHMP7Q8WUX9 453 aaPredicted RBP15□□□□□ -0.01
SRGAP2-217ENST00000624873 FAM50AQ14320 339 aaKnown RBP14.99□□□□□ -0.01
SRGAP2-217ENST00000624873 CDK11AQ9UQ88 783 aaPredicted RBP14.99□□□□□ -0.01
SRGAP2-217ENST00000624873 ERCC6Q03468 1493 aa14.98□□□□□ -0.01
SRGAP2-217ENST00000624873 ARID3CA6NKF2 412 aa14.91□□□□□ -0.02
SRGAP2-217ENST00000624873 CECR2Q9BXF3 1484 aa14.9□□□□□ -0.02
SRGAP2-217ENST00000624873 TRIM52Q96A61 297 aa14.85□□□□□ -0.03
SRGAP2-217ENST00000624873 SMARCA2P51531 1590 aa14.83□□□□□ -0.04
SRGAP2-217ENST00000624873 PELP1Q8IZL8 1130 aaKnown RBP14.82□□□□□ -0.04
SRGAP2-217ENST00000624873 WRNQ14191 1432 aaPredicted RBP eCLIP14.79□□□□□ -0.04
SRGAP2-217ENST00000624873 ZNF777Q9ULD5 760 aaPredicted RBP14.79□□□□□ -0.04
SRGAP2-217ENST00000624873 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
SRGAP2-217ENST00000624873 ESF1Q9H501 851 aaKnown RBP14.75□□□□□ -0.05
SRGAP2-217ENST00000624873 POLR3GLQ9BT43 218 aa14.75□□□□□ -0.05
SRGAP2-217ENST00000624873 KIF27Q86VH2 1401 aa14.71□□□□□ -0.05
SRGAP2-217ENST00000624873 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.05
SRGAP2-217ENST00000624873 EEA1Q15075 1411 aa14.69□□□□□ -0.06
SRGAP2-217ENST00000624873 SLC4A1APQ9BWU0 796 aaKnown RBP14.64□□□□□ -0.07
SRGAP2-217ENST00000624873 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
SRGAP2-217ENST00000624873 ATAD2BQ9ULI0 1458 aa14.6□□□□□ -0.07
SRGAP2-217ENST00000624873 BCANQ96GW7 911 aa14.6□□□□□ -0.07
SRGAP2-217ENST00000624873 CENPBP07199 599 aaPredicted RBP14.59□□□□□ -0.07
SRGAP2-217ENST00000624873 PLEKHD1A6NEE1 506 aa14.59□□□□□ -0.07
SRGAP2-217ENST00000624873 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.07
SRGAP2-217ENST00000624873 MTUS2Q5JR59 1369 aa14.57□□□□□ -0.08
SRGAP2-217ENST00000624873 NEUROD1Q13562 356 aa14.57□□□□□ -0.08
SRGAP2-217ENST00000624873 TSPY4P0CV99 314 aa14.56□□□□□ -0.08
SRGAP2-217ENST00000624873 TSPY10P0CW01 314 aa14.56□□□□□ -0.08
SRGAP2-217ENST00000624873 KCNH8Q96L42 1107 aa14.55□□□□□ -0.08
SRGAP2-217ENST00000624873 CLIP1P30622 1438 aa14.54□□□□□ -0.08
SRGAP2-217ENST00000624873 ZNF326Q5BKZ1 582 aaKnown RBP14.53□□□□□ -0.08
SRGAP2-217ENST00000624873 CUX2O14529 1486 aa14.53□□□□□ -0.08
SRGAP2-217ENST00000624873 GOLGA3Q08378 1498 aa14.52□□□□□ -0.08
SRGAP2-217ENST00000624873 STAG3Q9UJ98 1225 aa14.51□□□□□ -0.09
SRGAP2-217ENST00000624873 TOP2AP11388 1531 aaKnown RBP14.51□□□□□ -0.09
SRGAP2-217ENST00000624873 SMARCA4P51532 1647 aa14.5□□□□□ -0.09
SRGAP2-217ENST00000624873 SOGA1O94964 1423 aa14.49□□□□□ -0.09
SRGAP2-217ENST00000624873 CARMIL1Q5VZK9 1371 aa14.48□□□□□ -0.09
SRGAP2-217ENST00000624873 CEP164Q9UPV0 1460 aa14.48□□□□□ -0.09
SRGAP2-217ENST00000624873 PLPPR3Q6T4P5 718 aa14.47□□□□□ -0.09
SRGAP2-217ENST00000624873 CNGB1Q14028 1251 aaPredicted RBP14.47□□□□□ -0.09
SRGAP2-217ENST00000624873 WIZO95785 1651 aa14.46□□□□□ -0.09
SRGAP2-217ENST00000624873 CHGAP10645 457 aaKnown RBP14.44□□□□□ -0.1
SRGAP2-217ENST00000624873 TDRD9Q8NDG6 1382 aaKnown RBP14.44□□□□□ -0.1
SRGAP2-217ENST00000624873 NEFLP07196 543 aa14.44□□□□□ -0.1
SRGAP2-217ENST00000624873 CHIC2Q9UKJ5 165 aa14.41□□□□□ -0.1
SRGAP2-217ENST00000624873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.41□□□□□ -0.18e-7■■□□□ 13.2
SRGAP2-217ENST00000624873 TRHP20396 242 aaPredicted RBP14.4□□□□□ -0.1
SRGAP2-217ENST00000624873 HRCP23327 699 aa14.4□□□□□ -0.1
SRGAP2-217ENST00000624873 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
SRGAP2-217ENST00000624873 NCAPD3P42695 1498 aa14.39□□□□□ -0.11
SRGAP2-217ENST00000624873 YTHDC1Q96MU7 727 aaKnown RBP14.37□□□□□ -0.11
SRGAP2-217ENST00000624873 CARMIL2Q6F5E8 1435 aa14.37□□□□□ -0.11
SRGAP2-217ENST00000624873 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
SRGAP2-217ENST00000624873 FANCD2Q9BXW9 1451 aa14.37□□□□□ -0.11
SRGAP2-217ENST00000624873 TNIKQ9UKE5 1360 aa14.36□□□□□ -0.11
SRGAP2-217ENST00000624873 CFDP1Q9UEE9 299 aaPredicted RBP14.36□□□□□ -0.11
SRGAP2-217ENST00000624873 CEP162Q5TB80 1403 aa14.35□□□□□ -0.11
SRGAP2-217ENST00000624873 ARID4BQ4LE39 1312 aaPredicted RBP14.34□□□□□ -0.11
SRGAP2-217ENST00000624873 FHAD1B1AJZ9 1412 aa14.3□□□□□ -0.12
SRGAP2-217ENST00000624873 ACIN1Q9UKV3 1341 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms