RNA–Protein interactions for RNA: ENST00000551297.6

TMEM116-214, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 660 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-214ENST00000551297 NISCHQ9Y2I1 1504 aa17.34■□□□□ 0.37
TMEM116-214ENST00000551297 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.02
TMEM116-214ENST00000551297 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
TMEM116-214ENST00000551297 DCAF1Q9Y4B6 1507 aa14.47□□□□□ -0.09
TMEM116-214ENST00000551297 MYO15BQ96JP2 1530 aa14.27□□□□□ -0.12
TMEM116-214ENST00000551297 NACADO15069 1562 aa14.09□□□□□ -0.15
TMEM116-214ENST00000551297 DCAF8L2P0C7V8 631 aa14.06□□□□□ -0.16
TMEM116-214ENST00000551297 SHROOM4Q9ULL8 1493 aa14.04□□□□□ -0.16
TMEM116-214ENST00000551297 ABCC9O60706 1549 aa14□□□□□ -0.17
TMEM116-214ENST00000551297 RB1CC1Q8TDY2 1594 aa13.92□□□□□ -0.18
TMEM116-214ENST00000551297 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
TMEM116-214ENST00000551297 SUPT5HO00267 1087 aaKnown RBP13.6□□□□□ -0.23
TMEM116-214ENST00000551297 UNC13AQ9UPW8 1703 aa13.52□□□□□ -0.25
TMEM116-214ENST00000551297 BAZ1AQ9NRL2 1556 aaPredicted RBP13.46□□□□□ -0.25
TMEM116-214ENST00000551297 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
TMEM116-214ENST00000551297 BICRAQ9NZM4 1560 aa13.35□□□□□ -0.27
TMEM116-214ENST00000551297 SMARCA4P51532 1647 aa13.32□□□□□ -0.28
TMEM116-214ENST00000551297 CECR2Q9BXF3 1484 aa13.32□□□□□ -0.28
TMEM116-214ENST00000551297 MROH2BQ7Z745 1585 aa13.32□□□□□ -0.28
TMEM116-214ENST00000551297 TOP2AP11388 1531 aaKnown RBP13.23□□□□□ -0.29
TMEM116-214ENST00000551297 WIZO95785 1651 aa13.22□□□□□ -0.29
TMEM116-214ENST00000551297 PEG3Q9GZU2 1588 aa13.21□□□□□ -0.29
TMEM116-214ENST00000551297 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
TMEM116-214ENST00000551297 CHIC1Q5VXU3 224 aa13.13□□□□□ -0.31
TMEM116-214ENST00000551297 PABPN1Q86U42 306 aaKnown RBP eCLIP13.11□□□□□ -0.31
TMEM116-214ENST00000551297 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
TMEM116-214ENST00000551297 BAZ1BQ9UIG0 1483 aaKnown RBP13.01□□□□□ -0.33
TMEM116-214ENST00000551297 HMGXB3Q12766 1538 aa13.01□□□□□ -0.33
TMEM116-214ENST00000551297 EIF4G1Q04637 1599 aaKnown RBP13□□□□□ -0.33
TMEM116-214ENST00000551297 CCDC88BA6NC98 1476 aa12.97□□□□□ -0.33
TMEM116-214ENST00000551297 NCAPD3P42695 1498 aa12.91□□□□□ -0.34
TMEM116-214ENST00000551297 TRIM41Q8WV44 630 aa12.87□□□□□ -0.35
TMEM116-214ENST00000551297 EEA1Q15075 1411 aa12.76□□□□□ -0.37
TMEM116-214ENST00000551297 PRDM2Q13029 1718 aa12.74□□□□□ -0.37
TMEM116-214ENST00000551297 CC2D2AQ9P2K1 1620 aa12.73□□□□□ -0.37
TMEM116-214ENST00000551297 WRNQ14191 1432 aaPredicted RBP eCLIP12.71□□□□□ -0.37
TMEM116-214ENST00000551297 ABCC8Q09428 1581 aa12.7□□□□□ -0.38
TMEM116-214ENST00000551297 CFTRP13569 1480 aa12.67□□□□□ -0.38
TMEM116-214ENST00000551297 BIVM-ERCC5R4GMW8 1640 aa12.64□□□□□ -0.39
TMEM116-214ENST00000551297 TOP2BQ02880 1626 aa12.63□□□□□ -0.39
TMEM116-214ENST00000551297 SYNJ1O43426 1573 aa12.61□□□□□ -0.39
TMEM116-214ENST00000551297 CADPSQ9ULU8 1353 aa12.57□□□□□ -0.4
TMEM116-214ENST00000551297 LAMC3Q9Y6N6 1575 aa12.53□□□□□ -0.4
TMEM116-214ENST00000551297 KIF21BO75037 1637 aa12.52□□□□□ -0.4
TMEM116-214ENST00000551297 LOC105371045A0A1W2PR82 267 aa12.5□□□□□ -0.41
TMEM116-214ENST00000551297 FAM9AQ8IZU1 332 aaPredicted RBP12.5□□□□□ -0.41
TMEM116-214ENST00000551297 GOLGA3Q08378 1498 aa12.5□□□□□ -0.41
TMEM116-214ENST00000551297 CEP164Q9UPV0 1460 aa12.5□□□□□ -0.41
TMEM116-214ENST00000551297 CUX1P39880 1505 aa12.48□□□□□ -0.41
TMEM116-214ENST00000551297 SOGA1O94964 1423 aa12.47□□□□□ -0.41
TMEM116-214ENST00000551297 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
TMEM116-214ENST00000551297 FANCD2Q9BXW9 1451 aa12.45□□□□□ -0.42
TMEM116-214ENST00000551297 TNIKQ9UKE5 1360 aa12.44□□□□□ -0.42
TMEM116-214ENST00000551297 DNMBPQ6XZF7 1577 aa12.43□□□□□ -0.42
TMEM116-214ENST00000551297 ERICH3Q5RHP9 1530 aa12.43□□□□□ -0.42
TMEM116-214ENST00000551297 KIF27Q86VH2 1401 aa12.43□□□□□ -0.42
TMEM116-214ENST00000551297 PDS5BQ9NTI5 1447 aa12.4□□□□□ -0.42
TMEM116-214ENST00000551297 CEP162Q5TB80 1403 aa12.37□□□□□ -0.43
TMEM116-214ENST00000551297 RUSC2Q8N2Y8 1516 aa12.35□□□□□ -0.43
TMEM116-214ENST00000551297 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
TMEM116-214ENST00000551297 PRXQ9BXM0 1461 aa12.33□□□□□ -0.44
TMEM116-214ENST00000551297 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
TMEM116-214ENST00000551297 UBTFP17480 764 aaKnown RBP12.3□□□□□ -0.44
TMEM116-214ENST00000551297 ABCA10Q8WWZ4 1543 aa12.3□□□□□ -0.44
TMEM116-214ENST00000551297 CUX2O14529 1486 aa12.29□□□□□ -0.44
TMEM116-214ENST00000551297 NESP48681 1621 aa12.29□□□□□ -0.44
TMEM116-214ENST00000551297 CUL7Q14999 1698 aa12.27□□□□□ -0.45
TMEM116-214ENST00000551297 TRIM26Q12899 539 aaPredicted RBP12.27□□□□□ -0.45
TMEM116-214ENST00000551297 POLA1P09884 1462 aaPredicted RBP12.27□□□□□ -0.45
TMEM116-214ENST00000551297 RAPGEF2Q9Y4G8 1499 aa12.27□□□□□ -0.45
TMEM116-214ENST00000551297 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
TMEM116-214ENST00000551297 KIF21AQ7Z4S6 1674 aa12.26□□□□□ -0.45
TMEM116-214ENST00000551297 CLIP1P30622 1438 aa12.25□□□□□ -0.45
TMEM116-214ENST00000551297 URB2Q14146 1524 aaKnown RBP12.23□□□□□ -0.45
TMEM116-214ENST00000551297 MRC2Q9UBG0 1479 aa12.22□□□□□ -0.45
TMEM116-214ENST00000551297 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
TMEM116-214ENST00000551297 VPS8Q8N3P4 1428 aa12.2□□□□□ -0.46
TMEM116-214ENST00000551297 ABCA5Q8WWZ7 1642 aa12.19□□□□□ -0.46
TMEM116-214ENST00000551297 PCGF6Q9BYE7 350 aa12.17□□□□□ -0.46
TMEM116-214ENST00000551297 IGF1RP08069 1367 aa12.17□□□□□ -0.46
TMEM116-214ENST00000551297 CARMIL1Q5VZK9 1371 aa12.17□□□□□ -0.46
TMEM116-214ENST00000551297 WDR62O43379 1518 aa12.16□□□□□ -0.46
TMEM116-214ENST00000551297 TARBP1Q13395 1621 aaKnown RBP12.13□□□□□ -0.47
TMEM116-214ENST00000551297 RAD54L2Q9Y4B4 1467 aa12.13□□□□□ -0.47
TMEM116-214ENST00000551297 GAPVD1Q14C86 1478 aa12.12□□□□□ -0.47
TMEM116-214ENST00000551297 IFT140Q96RY7 1462 aa12.12□□□□□ -0.47
TMEM116-214ENST00000551297 EFCAB5A4FU69 1503 aa12.11□□□□□ -0.47
TMEM116-214ENST00000551297 CTTNBP2Q8WZ74 1663 aa12.11□□□□□ -0.47
TMEM116-214ENST00000551297 ERCC6Q03468 1493 aa12.1□□□□□ -0.47
TMEM116-214ENST00000551297 APLP2Q06481 763 aa12.1□□□□□ -0.47
TMEM116-214ENST00000551297 PBRM1Q86U86 1689 aa12.08□□□□□ -0.48
TMEM116-214ENST00000551297 ARAP1Q96P48 1450 aa12.07□□□□□ -0.48
TMEM116-214ENST00000551297 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
TMEM116-214ENST00000551297 FHAD1B1AJZ9 1412 aa12.05□□□□□ -0.48
TMEM116-214ENST00000551297 GRIN2BQ13224 1484 aa12.04□□□□□ -0.48
TMEM116-214ENST00000551297 HRCP23327 699 aa12.04□□□□□ -0.48
TMEM116-214ENST00000551297 ARHGAP35Q9NRY4 1499 aa12.03□□□□□ -0.48
TMEM116-214ENST00000551297 MAP3K1Q13233 1512 aa12.03□□□□□ -0.48
TMEM116-214ENST00000551297 DNAJC5BQ9UF47 199 aa12.03□□□□□ -0.48
TMEM116-214ENST00000551297 ADAMTS12P58397 1594 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms