RNA–Protein interactions for RNA: ENST00000471572.6

NF1-208, Transcript of neurofibromin 1, humanhuman

TSL 2

Gene NF1, Length 2,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-208ENST00000471572 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
NF1-208ENST00000471572 AEBP2Q6ZN18 517 aaPredicted RBP18.2■□□□□ 0.5
NF1-208ENST00000471572 PHF23Q9BUL5 403 aaPredicted RBP16.72■□□□□ 0.27
NF1-208ENST00000471572 PLPPR3Q6T4P5 718 aa15.63■□□□□ 0.09
NF1-208ENST00000471572 EHMT2Q96KQ7 1210 aa15.41■□□□□ 0.06
NF1-208ENST00000471572 KCNA4P22459 653 aa15.05■□□□□ -0
NF1-208ENST00000471572 SENP3Q9H4L4 574 aaPredicted RBP15.04■□□□□ -0
NF1-208ENST00000471572 ADRA2BP18089 450 aa14.82□□□□□ -0.04
NF1-208ENST00000471572 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
NF1-208ENST00000471572 SLC24A1O60721 1099 aa14.52□□□□□ -0.09
NF1-208ENST00000471572 SLC4A1APQ9BWU0 796 aaKnown RBP14.42□□□□□ -0.1
NF1-208ENST00000471572 PPP6R1Q9UPN7 881 aa14.41□□□□□ -0.1
NF1-208ENST00000471572 RTN4Q9NQC3 1192 aaKnown RBP14.11□□□□□ -0.15
NF1-208ENST00000471572 PPP4R3CPQ6ZMV5 832 aa13.98□□□□□ -0.17
NF1-208ENST00000471572 ZBTB22O15209 634 aa13.96□□□□□ -0.17
NF1-208ENST00000471572 FOXD1Q16676 465 aa13.96□□□□□ -0.17
NF1-208ENST00000471572 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
NF1-208ENST00000471572 NPM3O75607 178 aaKnown RBP13.79□□□□□ -0.2
NF1-208ENST00000471572 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
NF1-208ENST00000471572 FOXD4L1Q9NU39 408 aa13.4□□□□□ -0.26
NF1-208ENST00000471572 PIAS4Q8N2W9 510 aaPredicted RBP13.38□□□□□ -0.27
NF1-208ENST00000471572 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.28
NF1-208ENST00000471572 FKBP8Q14318 412 aa13.17□□□□□ -0.3
NF1-208ENST00000471572 DNAJC5BQ9UF47 199 aa13.12□□□□□ -0.31
NF1-208ENST00000471572 SCAF1Q9H7N4 1312 aaKnown RBP12.91□□□□□ -0.34
NF1-208ENST00000471572 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
NF1-208ENST00000471572 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
NF1-208ENST00000471572 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
NF1-208ENST00000471572 MAPK8IP2Q13387 824 aaPredicted RBP12.77□□□□□ -0.37
NF1-208ENST00000471572 ATXN8OSP0DMR3 200 aa12.74□□□□□ -0.37
NF1-208ENST00000471572 RNF216Q9NWF9 866 aaPredicted RBP12.74□□□□□ -0.37
NF1-208ENST00000471572 TAOK2Q9UL54 1235 aa12.68□□□□□ -0.38
NF1-208ENST00000471572 BCANQ96GW7 911 aa12.66□□□□□ -0.38
NF1-208ENST00000471572 HAP1P54257 671 aaPredicted RBP12.63□□□□□ -0.39
NF1-208ENST00000471572 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
NF1-208ENST00000471572 TPRNQ4KMQ1 711 aa12.47□□□□□ -0.41
NF1-208ENST00000471572 HOXD11P31277 338 aaPredicted RBP12.43□□□□□ -0.42
NF1-208ENST00000471572 VSIG10Q8N0Z9 540 aa12.42□□□□□ -0.42
NF1-208ENST00000471572 ATF5Q9Y2D1 282 aaPredicted RBP12.39□□□□□ -0.43
NF1-208ENST00000471572 KDM2AQ9Y2K7 1162 aa12.33□□□□□ -0.43
NF1-208ENST00000471572 DCAF8L2P0C7V8 631 aa12.32□□□□□ -0.44
NF1-208ENST00000471572 TIMELESSQ9UNS1 1208 aa12.28□□□□□ -0.44
NF1-208ENST00000471572 FBLN2P98095 1184 aa12.25□□□□□ -0.45
NF1-208ENST00000471572 MSH5O43196 834 aa12.24□□□□□ -0.45
NF1-208ENST00000471572 FBXO3Q9UK99 471 aa12.23□□□□□ -0.45
NF1-208ENST00000471572 DMRT2Q9Y5R5 561 aa12.23□□□□□ -0.45
NF1-208ENST00000471572 PKD2Q13563 968 aa12.21□□□□□ -0.46
NF1-208ENST00000471572 DAXXQ9UER7 740 aaPredicted RBP12.18□□□□□ -0.46
NF1-208ENST00000471572 VASPP50552 380 aaPredicted RBP12.17□□□□□ -0.46
NF1-208ENST00000471572 IFNLR1Q8IU57 520 aaPredicted RBP12.17□□□□□ -0.46
NF1-208ENST00000471572 TULP1O00294 542 aaPredicted RBP12.14□□□□□ -0.47
NF1-208ENST00000471572 PROM2Q8N271 834 aa12.06□□□□□ -0.48
NF1-208ENST00000471572 NPM1P06748 294 aaKnown RBP eCLIP12.05□□□□□ -0.48
NF1-208ENST00000471572 PAXIP1Q6ZW49 1069 aaPredicted RBP12.04□□□□□ -0.48
NF1-208ENST00000471572 ARXQ96QS3 562 aa12.04□□□□□ -0.48
NF1-208ENST00000471572 SPDYE4A6NLX3 237 aa12.03□□□□□ -0.48
NF1-208ENST00000471572 BBXQ8WY36 941 aaPredicted RBP12.03□□□□□ -0.48
NF1-208ENST00000471572 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.01□□□□□ -0.49
NF1-208ENST00000471572 CFAP44Q96MT7 982 aa11.99□□□□□ -0.49
NF1-208ENST00000471572 GTF3C3Q9Y5Q9 886 aa11.96□□□□□ -0.49
NF1-208ENST00000471572 TSHZ2Q9NRE2 1034 aa11.95□□□□□ -0.5
NF1-208ENST00000471572 SAMD1Q6SPF0 538 aaPredicted RBP11.93□□□□□ -0.5
NF1-208ENST00000471572 ZNF219Q9P2Y4 722 aaPredicted RBP11.89□□□□□ -0.51
NF1-208ENST00000471572 MKRN4PQ13434 485 aaPredicted RBP11.88□□□□□ -0.51
NF1-208ENST00000471572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
NF1-208ENST00000471572 HNRNPUL2Q1KMD3 747 aaKnown RBP11.85□□□□□ -0.51
NF1-208ENST00000471572 U3KPZ7 1027 aaPredicted RBP11.85□□□□□ -0.51
NF1-208ENST00000471572 ECM2O94769 699 aaPredicted RBP11.81□□□□□ -0.52
NF1-208ENST00000471572 SPRYD3Q8NCJ5 442 aa11.81□□□□□ -0.52
NF1-208ENST00000471572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.79□□□□□ -0.52
NF1-208ENST00000471572 DNAJC5Q9H3Z4 198 aa11.79□□□□□ -0.52
NF1-208ENST00000471572 RGL2O15211 777 aa11.77□□□□□ -0.52
NF1-208ENST00000471572 NBR1Q14596 966 aa11.77□□□□□ -0.52
NF1-208ENST00000471572 TMEM132AQ24JP5 1023 aa11.75□□□□□ -0.53
NF1-208ENST00000471572 HOMEZQ8IX15 550 aa11.72□□□□□ -0.53
NF1-208ENST00000471572 ERICH6Q7L0X2 663 aa11.7□□□□□ -0.54
NF1-208ENST00000471572 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
NF1-208ENST00000471572 DCAF8L1A6NGE4 600 aa11.62□□□□□ -0.55
NF1-208ENST00000471572 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
NF1-208ENST00000471572 CHGAP10645 457 aaKnown RBP11.59□□□□□ -0.55
NF1-208ENST00000471572 C14orf37Q86TY3 774 aa11.59□□□□□ -0.55
NF1-208ENST00000471572 HS6ST3Q8IZP7 471 aa11.42□□□□□ -0.58
NF1-208ENST00000471572 APLP2Q06481 763 aa11.37□□□□□ -0.59
NF1-208ENST00000471572 NKX1-1Q15270 411 aaPredicted RBP11.37□□□□□ -0.59
NF1-208ENST00000471572 SUPT5HO00267 1087 aaKnown RBP11.36□□□□□ -0.59
NF1-208ENST00000471572 PLCD3Q8N3E9 789 aa11.35□□□□□ -0.59
NF1-208ENST00000471572 POLA2Q14181 598 aa11.34□□□□□ -0.59
NF1-208ENST00000471572 PODXL2Q9NZ53 605 aa11.34□□□□□ -0.59
NF1-208ENST00000471572 CIZ1Q9ULV3 898 aaPredicted RBP11.34□□□□□ -0.59
NF1-208ENST00000471572 RNF25Q96BH1 459 aaPredicted RBP11.32□□□□□ -0.6
NF1-208ENST00000471572 GTPBP6O43824 516 aaPredicted RBP11.3□□□□□ -0.6
NF1-208ENST00000471572 STAG3Q9UJ98 1225 aa11.29□□□□□ -0.6
NF1-208ENST00000471572 BRPF1P55201 1214 aaPredicted RBP11.27□□□□□ -0.61
NF1-208ENST00000471572 TRHP20396 242 aaPredicted RBP11.25□□□□□ -0.61
NF1-208ENST00000471572 MIER1Q8N108 512 aa11.25□□□□□ -0.61
NF1-208ENST00000471572 SPINK5Q9NQ38 1064 aaPredicted RBP11.22□□□□□ -0.61
NF1-208ENST00000471572 LMOD2Q6P5Q4 547 aa11.18□□□□□ -0.62
NF1-208ENST00000471572 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.18□□□□□ -0.62
NF1-208ENST00000471572 RANGAP1P46060 587 aaPredicted RBP11.17□□□□□ -0.62
NF1-208ENST00000471572 UBTFP17480 764 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms