RNA–Protein interactions for RNA: ENST00000548283.6

TMEM116-206, Transcript of transmembrane protein 116, humanhuman

TSL 5

Gene TMEM116, Length 3,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-206ENST00000548283 NISCHQ9Y2I1 1504 aa17■□□□□ 0.31
TMEM116-206ENST00000548283 CCDC180Q9P1Z9 1646 aa15.42■□□□□ 0.06
TMEM116-206ENST00000548283 MYO15BQ96JP2 1530 aa14.59□□□□□ -0.07
TMEM116-206ENST00000548283 DCAF1Q9Y4B6 1507 aa14.5□□□□□ -0.09
TMEM116-206ENST00000548283 ZCCHC6Q5VYS8 1495 aaKnown RBP14.38□□□□□ -0.11
TMEM116-206ENST00000548283 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
TMEM116-206ENST00000548283 NACADO15069 1562 aa13.94□□□□□ -0.18
TMEM116-206ENST00000548283 UNC13AQ9UPW8 1703 aa13.79□□□□□ -0.2
TMEM116-206ENST00000548283 RB1CC1Q8TDY2 1594 aa13.67□□□□□ -0.22
TMEM116-206ENST00000548283 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
TMEM116-206ENST00000548283 ABCC9O60706 1549 aa13.53□□□□□ -0.24
TMEM116-206ENST00000548283 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
TMEM116-206ENST00000548283 SCRIBQ14160 1630 aa13.4□□□□□ -0.27
TMEM116-206ENST00000548283 PEG3Q9GZU2 1588 aa13.35□□□□□ -0.27
TMEM116-206ENST00000548283 EHMT2Q96KQ7 1210 aa13.25□□□□□ -0.29
TMEM116-206ENST00000548283 BAZ1AQ9NRL2 1556 aaPredicted RBP13.12□□□□□ -0.31
TMEM116-206ENST00000548283 SMARCA4P51532 1647 aa13.11□□□□□ -0.31
TMEM116-206ENST00000548283 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
TMEM116-206ENST00000548283 RSF1Q96T23 1441 aaPredicted RBP13.06□□□□□ -0.32
TMEM116-206ENST00000548283 PRDM2Q13029 1718 aa13.04□□□□□ -0.32
TMEM116-206ENST00000548283 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.33
TMEM116-206ENST00000548283 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
TMEM116-206ENST00000548283 EIF4G1Q04637 1599 aaKnown RBP12.98□□□□□ -0.33
TMEM116-206ENST00000548283 TOP2AP11388 1531 aaKnown RBP12.94□□□□□ -0.34
TMEM116-206ENST00000548283 HMGXB3Q12766 1538 aa12.94□□□□□ -0.34
TMEM116-206ENST00000548283 WIZO95785 1651 aa12.93□□□□□ -0.34
TMEM116-206ENST00000548283 DCAF8L2P0C7V8 631 aa12.92□□□□□ -0.34
TMEM116-206ENST00000548283 PLPPR3Q6T4P5 718 aa12.79□□□□□ -0.36
TMEM116-206ENST00000548283 ATAD2BQ9ULI0 1458 aa12.77□□□□□ -0.37
TMEM116-206ENST00000548283 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
TMEM116-206ENST00000548283 CHIC1Q5VXU3 224 aa12.72□□□□□ -0.37
TMEM116-206ENST00000548283 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
TMEM116-206ENST00000548283 CC2D2AQ9P2K1 1620 aa12.6□□□□□ -0.39
TMEM116-206ENST00000548283 BAZ1BQ9UIG0 1483 aaKnown RBP12.57□□□□□ -0.4
TMEM116-206ENST00000548283 WDR97A6NE52 1622 aa12.56□□□□□ -0.4
TMEM116-206ENST00000548283 PABPN1Q86U42 306 aaKnown RBP eCLIP12.52□□□□□ -0.4
TMEM116-206ENST00000548283 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
TMEM116-206ENST00000548283 BIVM-ERCC5R4GMW8 1640 aa12.49□□□□□ -0.41
TMEM116-206ENST00000548283 SUPT5HO00267 1087 aaKnown RBP12.47□□□□□ -0.41
TMEM116-206ENST00000548283 CFTRP13569 1480 aa12.45□□□□□ -0.42
TMEM116-206ENST00000548283 LAMC3Q9Y6N6 1575 aa12.41□□□□□ -0.42
TMEM116-206ENST00000548283 TOP2BQ02880 1626 aa12.38□□□□□ -0.43
TMEM116-206ENST00000548283 AEBP2Q6ZN18 517 aaPredicted RBP12.31□□□□□ -0.44
TMEM116-206ENST00000548283 SYNJ1O43426 1573 aa12.31□□□□□ -0.44
TMEM116-206ENST00000548283 PRKCSHP14314 528 aaPredicted RBP12.27□□□□□ -0.45
TMEM116-206ENST00000548283 THOC2Q8NI27 1593 aaKnown RBP12.24□□□□□ -0.45
TMEM116-206ENST00000548283 ABCC8Q09428 1581 aa12.23□□□□□ -0.45
TMEM116-206ENST00000548283 CADPSQ9ULU8 1353 aa12.23□□□□□ -0.45
TMEM116-206ENST00000548283 CUX1P39880 1505 aa12.22□□□□□ -0.45
TMEM116-206ENST00000548283 EEA1Q15075 1411 aa12.2□□□□□ -0.46
TMEM116-206ENST00000548283 DNMBPQ6XZF7 1577 aa12.18□□□□□ -0.46
TMEM116-206ENST00000548283 KIF21BO75037 1637 aa12.18□□□□□ -0.46
TMEM116-206ENST00000548283 WRNQ14191 1432 aaPredicted RBP eCLIP12.18□□□□□ -0.46
TMEM116-206ENST00000548283 WDR62O43379 1518 aa12.15□□□□□ -0.46
TMEM116-206ENST00000548283 KIF21AQ7Z4S6 1674 aa12.15□□□□□ -0.46
TMEM116-206ENST00000548283 DAXXQ9UER7 740 aaPredicted RBP12.15□□□□□ -0.46
TMEM116-206ENST00000548283 ERICH3Q5RHP9 1530 aa12.08□□□□□ -0.48
TMEM116-206ENST00000548283 FANCD2Q9BXW9 1451 aa12.08□□□□□ -0.48
TMEM116-206ENST00000548283 ABCA5Q8WWZ7 1642 aa12.07□□□□□ -0.48
TMEM116-206ENST00000548283 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
TMEM116-206ENST00000548283 ABCA10Q8WWZ4 1543 aa12.04□□□□□ -0.48
TMEM116-206ENST00000548283 TOPBP1Q92547 1522 aa12.04□□□□□ -0.48
TMEM116-206ENST00000548283 URB2Q14146 1524 aaKnown RBP12.03□□□□□ -0.48
TMEM116-206ENST00000548283 PRXQ9BXM0 1461 aa12□□□□□ -0.49
TMEM116-206ENST00000548283 CEP164Q9UPV0 1460 aa12□□□□□ -0.49
TMEM116-206ENST00000548283 NESP48681 1621 aa12□□□□□ -0.49
TMEM116-206ENST00000548283 CUL7Q14999 1698 aa11.99□□□□□ -0.49
TMEM116-206ENST00000548283 PDS5BQ9NTI5 1447 aa11.99□□□□□ -0.49
TMEM116-206ENST00000548283 KCNA4P22459 653 aa11.98□□□□□ -0.49
TMEM116-206ENST00000548283 FGD5Q6ZNL6 1462 aa11.96□□□□□ -0.5
TMEM116-206ENST00000548283 SOGA1O94964 1423 aa11.96□□□□□ -0.5
TMEM116-206ENST00000548283 POLA1P09884 1462 aaPredicted RBP11.95□□□□□ -0.5
TMEM116-206ENST00000548283 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
TMEM116-206ENST00000548283 RUSC2Q8N2Y8 1516 aa11.93□□□□□ -0.5
TMEM116-206ENST00000548283 PBRM1Q86U86 1689 aa11.93□□□□□ -0.5
TMEM116-206ENST00000548283 NCBP3Q53F19 620 aaKnown RBP11.92□□□□□ -0.5
TMEM116-206ENST00000548283 TRIM41Q8WV44 630 aa11.92□□□□□ -0.5
TMEM116-206ENST00000548283 CUX2O14529 1486 aa11.91□□□□□ -0.5
TMEM116-206ENST00000548283 GOLGA3Q08378 1498 aa11.88□□□□□ -0.51
TMEM116-206ENST00000548283 DNAJC5BQ9UF47 199 aa11.88□□□□□ -0.51
TMEM116-206ENST00000548283 TNIKQ9UKE5 1360 aa11.87□□□□□ -0.51
TMEM116-206ENST00000548283 CTTNBP2Q8WZ74 1663 aa11.87□□□□□ -0.51
TMEM116-206ENST00000548283 KIF27Q86VH2 1401 aa11.85□□□□□ -0.51
TMEM116-206ENST00000548283 IFT140Q96RY7 1462 aa11.82□□□□□ -0.52
TMEM116-206ENST00000548283 CSRNP3Q8WYN3 585 aa11.82□□□□□ -0.52
TMEM116-206ENST00000548283 ADAMTS12P58397 1594 aa11.82□□□□□ -0.52
TMEM116-206ENST00000548283 IGF1RP08069 1367 aa11.8□□□□□ -0.52
TMEM116-206ENST00000548283 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
TMEM116-206ENST00000548283 SAMD9Q5K651 1589 aa11.78□□□□□ -0.52
TMEM116-206ENST00000548283 RAPGEF2Q9Y4G8 1499 aa11.78□□□□□ -0.52
TMEM116-206ENST00000548283 HRCP23327 699 aa11.77□□□□□ -0.52
TMEM116-206ENST00000548283 EIF4G3O43432 1585 aaKnown RBP11.77□□□□□ -0.53
TMEM116-206ENST00000548283 TIMELESSQ9UNS1 1208 aa11.77□□□□□ -0.53
TMEM116-206ENST00000548283 AMER1Q5JTC6 1135 aaPredicted RBP11.74□□□□□ -0.53
TMEM116-206ENST00000548283 RAD54L2Q9Y4B4 1467 aa11.74□□□□□ -0.53
TMEM116-206ENST00000548283 EFCAB5A4FU69 1503 aa11.73□□□□□ -0.53
TMEM116-206ENST00000548283 MAP3K1Q13233 1512 aa11.72□□□□□ -0.53
TMEM116-206ENST00000548283 PHF23Q9BUL5 403 aaPredicted RBP11.72□□□□□ -0.53
TMEM116-206ENST00000548283 GAPVD1Q14C86 1478 aa11.71□□□□□ -0.54
TMEM116-206ENST00000548283 TULP1O00294 542 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms