RNA–Protein interactions for RNA: ENST00000417641.6

VRK2-203, Transcript of vaccinia related kinase 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK2, Length 2,381 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-203ENST00000417641 NISCHQ9Y2I1 1504 aa15.4■□□□□ 0.06
VRK2-203ENST00000417641 HRCP23327 699 aa13.34□□□□□ -0.27
VRK2-203ENST00000417641 SHROOM4Q9ULL8 1493 aa13.3□□□□□ -0.28
VRK2-203ENST00000417641 SUPT5HO00267 1087 aaKnown RBP13.21□□□□□ -0.3
VRK2-203ENST00000417641 MYO15BQ96JP2 1530 aa13.19□□□□□ -0.3
VRK2-203ENST00000417641 CHIC1Q5VXU3 224 aa13.17□□□□□ -0.3
VRK2-203ENST00000417641 AEBP2Q6ZN18 517 aaPredicted RBP13.13□□□□□ -0.31
VRK2-203ENST00000417641 ZCCHC6Q5VYS8 1495 aaKnown RBP13.11□□□□□ -0.31
VRK2-203ENST00000417641 PCGF6Q9BYE7 350 aa13□□□□□ -0.33
VRK2-203ENST00000417641 PPARGC1BQ86YN6 1023 aaKnown RBP12.97□□□□□ -0.33
VRK2-203ENST00000417641 DCAF1Q9Y4B6 1507 aa12.95□□□□□ -0.34
VRK2-203ENST00000417641 CCDC180Q9P1Z9 1646 aa12.89□□□□□ -0.35
VRK2-203ENST00000417641 LOC105371045A0A1W2PR82 267 aa12.71□□□□□ -0.37
VRK2-203ENST00000417641 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.38
VRK2-203ENST00000417641 PELP1Q8IZL8 1130 aaKnown RBP12.67□□□□□ -0.38
VRK2-203ENST00000417641 ZEB1P37275 1124 aaPredicted RBP12.58□□□□□ -0.4
VRK2-203ENST00000417641 SCAF1Q9H7N4 1312 aaKnown RBP12.52□□□□□ -0.41
VRK2-203ENST00000417641 DCAF8L2P0C7V8 631 aa12.5□□□□□ -0.41
VRK2-203ENST00000417641 ABCC9O60706 1549 aa12.42□□□□□ -0.42
VRK2-203ENST00000417641 RSF1Q96T23 1441 aaPredicted RBP12.34□□□□□ -0.43
VRK2-203ENST00000417641 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
VRK2-203ENST00000417641 ACIN1Q9UKV3 1341 aaKnown RBP12.26□□□□□ -0.45
VRK2-203ENST00000417641 RB1CC1Q8TDY2 1594 aa12.24□□□□□ -0.45
VRK2-203ENST00000417641 NEUROD1Q13562 356 aa12.21□□□□□ -0.46
VRK2-203ENST00000417641 FAM9AQ8IZU1 332 aaPredicted RBP12.18□□□□□ -0.46
VRK2-203ENST00000417641 MYT1Q01538 1121 aa12.14□□□□□ -0.47
VRK2-203ENST00000417641 SCRIBQ14160 1630 aa12.11□□□□□ -0.47
VRK2-203ENST00000417641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.1□□□□□ -0.47
VRK2-203ENST00000417641 GTF3C3Q9Y5Q9 886 aa12.08□□□□□ -0.47
VRK2-203ENST00000417641 DIEXFQ68CQ4 756 aaKnown RBP12.06□□□□□ -0.48
VRK2-203ENST00000417641 CCER1Q8TC90 406 aaPredicted RBP12.05□□□□□ -0.48
VRK2-203ENST00000417641 CENPBP07199 599 aaPredicted RBP12.05□□□□□ -0.48
VRK2-203ENST00000417641 WRNQ14191 1432 aaPredicted RBP eCLIP12.02□□□□□ -0.49
VRK2-203ENST00000417641 EHMT2Q96KQ7 1210 aa12.01□□□□□ -0.49
VRK2-203ENST00000417641 EIF4G1Q04637 1599 aaKnown RBP12.01□□□□□ -0.49
VRK2-203ENST00000417641 CECR2Q9BXF3 1484 aa12□□□□□ -0.49
VRK2-203ENST00000417641 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
VRK2-203ENST00000417641 WIZO95785 1651 aa11.92□□□□□ -0.5
VRK2-203ENST00000417641 ZNF316A6NFI3 1004 aaPredicted RBP11.91□□□□□ -0.5
VRK2-203ENST00000417641 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
VRK2-203ENST00000417641 CEP162Q5TB80 1403 aa11.86□□□□□ -0.51
VRK2-203ENST00000417641 TNIKQ9UKE5 1360 aa11.85□□□□□ -0.51
VRK2-203ENST00000417641 NACADO15069 1562 aa11.83□□□□□ -0.52
VRK2-203ENST00000417641 CCDC88BA6NC98 1476 aa11.82□□□□□ -0.52
VRK2-203ENST00000417641 MIER1Q8N108 512 aa11.79□□□□□ -0.52
VRK2-203ENST00000417641 ABCC8Q09428 1581 aa11.77□□□□□ -0.52
VRK2-203ENST00000417641 SOGA1O94964 1423 aa11.76□□□□□ -0.53
VRK2-203ENST00000417641 EEA1Q15075 1411 aa11.76□□□□□ -0.53
VRK2-203ENST00000417641 TOP2AP11388 1531 aaKnown RBP11.75□□□□□ -0.53
VRK2-203ENST00000417641 YTHDC1Q96MU7 727 aaKnown RBP11.73□□□□□ -0.53
VRK2-203ENST00000417641 TTBK1Q5TCY1 1321 aaPredicted RBP11.73□□□□□ -0.53
VRK2-203ENST00000417641 CSRNP3Q8WYN3 585 aa11.71□□□□□ -0.53
VRK2-203ENST00000417641 SMARCA2P51531 1590 aa11.71□□□□□ -0.53
VRK2-203ENST00000417641 RUSC2Q8N2Y8 1516 aa11.71□□□□□ -0.54
VRK2-203ENST00000417641 GOLGA3Q08378 1498 aa11.68□□□□□ -0.54
VRK2-203ENST00000417641 CLSPNQ9HAW4 1339 aa11.64□□□□□ -0.55
VRK2-203ENST00000417641 SMARCA4P51532 1647 aa11.63□□□□□ -0.55
VRK2-203ENST00000417641 UBTFP17480 764 aaKnown RBP11.62□□□□□ -0.55
VRK2-203ENST00000417641 HNRNPUL2Q1KMD3 747 aaKnown RBP11.6□□□□□ -0.55
VRK2-203ENST00000417641 KIF21BO75037 1637 aa11.59□□□□□ -0.55
VRK2-203ENST00000417641 SUPT16HQ9Y5B9 1047 aaKnown RBP11.59□□□□□ -0.55
VRK2-203ENST00000417641 CEP164Q9UPV0 1460 aa11.58□□□□□ -0.56
VRK2-203ENST00000417641 VPS8Q8N3P4 1428 aa11.58□□□□□ -0.56
VRK2-203ENST00000417641 CLIP1P30622 1438 aa11.57□□□□□ -0.56
VRK2-203ENST00000417641 PHF23Q9BUL5 403 aaPredicted RBP11.55□□□□□ -0.56
VRK2-203ENST00000417641 DHX57Q6P158 1386 aaKnown RBP11.53□□□□□ -0.56
VRK2-203ENST00000417641 TSHZ2Q9NRE2 1034 aa11.53□□□□□ -0.56
VRK2-203ENST00000417641 BAZ1BQ9UIG0 1483 aaKnown RBP11.52□□□□□ -0.56
VRK2-203ENST00000417641 SYNJ1O43426 1573 aa11.49□□□□□ -0.57
VRK2-203ENST00000417641 ANP32EQ9BTT0 268 aa11.48□□□□□ -0.57
VRK2-203ENST00000417641 RAPGEF2Q9Y4G8 1499 aa11.46□□□□□ -0.58
VRK2-203ENST00000417641 PEG3Q9GZU2 1588 aa11.43□□□□□ -0.58
VRK2-203ENST00000417641 CUX2O14529 1486 aa11.43□□□□□ -0.58
VRK2-203ENST00000417641 APLP2Q06481 763 aa11.4□□□□□ -0.58
VRK2-203ENST00000417641 RRBP1Q9P2E9 1410 aaKnown RBP11.4□□□□□ -0.58
VRK2-203ENST00000417641 UNC13AQ9UPW8 1703 aa11.38□□□□□ -0.59
VRK2-203ENST00000417641 ARAP1Q96P48 1450 aa11.38□□□□□ -0.59
VRK2-203ENST00000417641 KANK4Q5T7N3 995 aaPredicted RBP11.34□□□□□ -0.59
VRK2-203ENST00000417641 ERICH3Q5RHP9 1530 aa11.34□□□□□ -0.59
VRK2-203ENST00000417641 PRXQ9BXM0 1461 aa11.34□□□□□ -0.59
VRK2-203ENST00000417641 BCL11AQ9H165 835 aa11.33□□□□□ -0.6
VRK2-203ENST00000417641 KCNH8Q96L42 1107 aa11.33□□□□□ -0.6
VRK2-203ENST00000417641 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
VRK2-203ENST00000417641 MAPKBP1O60336 1514 aa11.3□□□□□ -0.6
VRK2-203ENST00000417641 BICRAQ9NZM4 1560 aa11.29□□□□□ -0.6
VRK2-203ENST00000417641 CCNB3Q8WWL7 1395 aa11.28□□□□□ -0.6
VRK2-203ENST00000417641 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.61
VRK2-203ENST00000417641 ATAD2BQ9ULI0 1458 aa11.26□□□□□ -0.61
VRK2-203ENST00000417641 RANGAP1P46060 587 aaPredicted RBP11.25□□□□□ -0.61
VRK2-203ENST00000417641 FKBP8Q14318 412 aa11.24□□□□□ -0.61
VRK2-203ENST00000417641 RBM19Q9Y4C8 960 aaKnown RBP11.24□□□□□ -0.61
VRK2-203ENST00000417641 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
VRK2-203ENST00000417641 RAB3GAP2Q9H2M9 1393 aa11.22□□□□□ -0.61
VRK2-203ENST00000417641 BCANQ96GW7 911 aa11.22□□□□□ -0.61
VRK2-203ENST00000417641 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.62
VRK2-203ENST00000417641 WDR97A6NE52 1622 aa11.2□□□□□ -0.62
VRK2-203ENST00000417641 CCER2I3L3R5 266 aa11.19□□□□□ -0.62
VRK2-203ENST00000417641 SENP3Q9H4L4 574 aaPredicted RBP11.19□□□□□ -0.62
VRK2-203ENST00000417641 MAP3K1Q13233 1512 aa11.19□□□□□ -0.62
VRK2-203ENST00000417641 DDX10Q13206 875 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms