RNA–Protein interactions for RNA: ENST00000577967.1

NF1-218, Transcript of neurofibromin 1, humanhuman

Gene NF1, Length 5,799 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-218ENST00000577967 NISCHQ9Y2I1 1504 aa8.78□□□□□ -1
NF1-218ENST00000577967 DCAF8L2P0C7V8 631 aa8.45□□□□□ -1.06
NF1-218ENST00000577967 SHROOM4Q9ULL8 1493 aa8.1□□□□□ -1.11
NF1-218ENST00000577967 SUPT5HO00267 1087 aaKnown RBP8□□□□□ -1.13
NF1-218ENST00000577967 EHMT2Q96KQ7 1210 aa7.7□□□□□ -1.18
NF1-218ENST00000577967 FAM9AQ8IZU1 332 aaPredicted RBP7.52□□□□□ -1.21
NF1-218ENST00000577967 ABCC9O60706 1549 aa7.51□□□□□ -1.21
NF1-218ENST00000577967 TRIM41Q8WV44 630 aa7.41□□□□□ -1.22
NF1-218ENST00000577967 CCDC180Q9P1Z9 1646 aa7.4□□□□□ -1.22
NF1-218ENST00000577967 TTBK1Q5TCY1 1321 aaPredicted RBP7.4□□□□□ -1.23
NF1-218ENST00000577967 RANGAP1P46060 587 aaPredicted RBP7.38□□□□□ -1.23
NF1-218ENST00000577967 PABPN1Q86U42 306 aaKnown RBP eCLIP7.34□□□□□ -1.23
NF1-218ENST00000577967 SCRIBQ14160 1630 aa7.32□□□□□ -1.24
NF1-218ENST00000577967 APLP2Q06481 763 aa7.31□□□□□ -1.24
NF1-218ENST00000577967 ZCCHC6Q5VYS8 1495 aaKnown RBP7.31□□□□□ -1.24
NF1-218ENST00000577967 PCGF6Q9BYE7 350 aa7.29□□□□□ -1.24
NF1-218ENST00000577967 UBTFP17480 764 aaKnown RBP7.25□□□□□ -1.25
NF1-218ENST00000577967 ATP1B4Q9UN42 357 aaPredicted RBP7.23□□□□□ -1.25
NF1-218ENST00000577967 PPARGC1BQ86YN6 1023 aaKnown RBP7.22□□□□□ -1.25
NF1-218ENST00000577967 CHIC1Q5VXU3 224 aa7.22□□□□□ -1.25
NF1-218ENST00000577967 LOC105371045A0A1W2PR82 267 aa7.21□□□□□ -1.26
NF1-218ENST00000577967 RB1CC1Q8TDY2 1594 aa7.11□□□□□ -1.27
NF1-218ENST00000577967 CCER1Q8TC90 406 aaPredicted RBP7.1□□□□□ -1.27
NF1-218ENST00000577967 NACADO15069 1562 aa7.05□□□□□ -1.28
NF1-218ENST00000577967 TRIM26Q12899 539 aaPredicted RBP7.05□□□□□ -1.28
NF1-218ENST00000577967 ZEB1P37275 1124 aaPredicted RBP7.01□□□□□ -1.29
NF1-218ENST00000577967 ITGAEP38570 1179 aa7.01□□□□□ -1.29
NF1-218ENST00000577967 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.99□□□□□ -1.29
NF1-218ENST00000577967 HNRNPUL2Q1KMD3 747 aaKnown RBP6.99□□□□□ -1.29
NF1-218ENST00000577967 DCAF1Q9Y4B6 1507 aa6.96□□□□□ -1.3
NF1-218ENST00000577967 RSF1Q96T23 1441 aaPredicted RBP6.95□□□□□ -1.3
NF1-218ENST00000577967 HRCP23327 699 aa6.91□□□□□ -1.3
NF1-218ENST00000577967 MYO15BQ96JP2 1530 aa6.9□□□□□ -1.3
NF1-218ENST00000577967 CECR2Q9BXF3 1484 aa6.9□□□□□ -1.31
NF1-218ENST00000577967 FBLN2P98095 1184 aa6.89□□□□□ -1.31
NF1-218ENST00000577967 MYT1LQ9UL68 1186 aa6.88□□□□□ -1.31
NF1-218ENST00000577967 P3H3Q8IVL6 736 aa6.88□□□□□ -1.31
NF1-218ENST00000577967 YTHDC1Q96MU7 727 aaKnown RBP6.88□□□□□ -1.31
NF1-218ENST00000577967 FAM50AQ14320 339 aaKnown RBP6.88□□□□□ -1.31
NF1-218ENST00000577967 CSRNP3Q8WYN3 585 aa6.87□□□□□ -1.31
NF1-218ENST00000577967 BAZ1BQ9UIG0 1483 aaKnown RBP6.86□□□□□ -1.31
NF1-218ENST00000577967 BAZ1AQ9NRL2 1556 aaPredicted RBP6.85□□□□□ -1.31
NF1-218ENST00000577967 ARID3CA6NKF2 412 aa6.84□□□□□ -1.31
NF1-218ENST00000577967 MROH2BQ7Z745 1585 aa6.84□□□□□ -1.32
NF1-218ENST00000577967 WIZO95785 1651 aa6.83□□□□□ -1.32
NF1-218ENST00000577967 CENPBP07199 599 aaPredicted RBP6.8□□□□□ -1.32
NF1-218ENST00000577967 PELP1Q8IZL8 1130 aaKnown RBP6.79□□□□□ -1.32
NF1-218ENST00000577967 POLR3GLQ9BT43 218 aa6.79□□□□□ -1.32
NF1-218ENST00000577967 TRIM52Q96A61 297 aa6.78□□□□□ -1.32
NF1-218ENST00000577967 NEUROD1Q13562 356 aa6.77□□□□□ -1.33
NF1-218ENST00000577967 CCDC88BA6NC98 1476 aa6.76□□□□□ -1.33
NF1-218ENST00000577967 ABCC8Q09428 1581 aa6.75□□□□□ -1.33
NF1-218ENST00000577967 WRNQ14191 1432 aaPredicted RBP eCLIP6.75□□□□□ -1.33
NF1-218ENST00000577967 CNGB1Q14028 1251 aaPredicted RBP6.75□□□□□ -1.33
NF1-218ENST00000577967 TOP2AP11388 1531 aaKnown RBP6.73□□□□□ -1.33
NF1-218ENST00000577967 SMARCA4P51532 1647 aa6.73□□□□□ -1.33
NF1-218ENST00000577967 SMARCA2P51531 1590 aa6.72□□□□□ -1.33
NF1-218ENST00000577967 GOLGA3Q08378 1498 aa6.71□□□□□ -1.34
NF1-218ENST00000577967 ZNF777Q9ULD5 760 aaPredicted RBP6.71□□□□□ -1.34
NF1-218ENST00000577967 DIEXFQ68CQ4 756 aaKnown RBP6.69□□□□□ -1.34
NF1-218ENST00000577967 CEP162Q5TB80 1403 aa6.69□□□□□ -1.34
NF1-218ENST00000577967 CLIP1P30622 1438 aa6.68□□□□□ -1.34
NF1-218ENST00000577967 SOGA1O94964 1423 aa6.68□□□□□ -1.34
NF1-218ENST00000577967 ERCC6Q03468 1493 aa6.68□□□□□ -1.34
NF1-218ENST00000577967 ZNF326Q5BKZ1 582 aaKnown RBP6.66□□□□□ -1.34
NF1-218ENST00000577967 CHMP7Q8WUX9 453 aaPredicted RBP6.66□□□□□ -1.34
NF1-218ENST00000577967 EEA1Q15075 1411 aa6.65□□□□□ -1.34
NF1-218ENST00000577967 KIF27Q86VH2 1401 aa6.65□□□□□ -1.34
NF1-218ENST00000577967 NEFLP07196 543 aa6.65□□□□□ -1.35
NF1-218ENST00000577967 SLC4A1APQ9BWU0 796 aaKnown RBP6.65□□□□□ -1.35
NF1-218ENST00000577967 CEP164Q9UPV0 1460 aa6.65□□□□□ -1.35
NF1-218ENST00000577967 ATAD2BQ9ULI0 1458 aa6.63□□□□□ -1.35
NF1-218ENST00000577967 EIF4G1Q04637 1599 aaKnown RBP6.63□□□□□ -1.35
NF1-218ENST00000577967 CHIC2Q9UKJ5 165 aa6.62□□□□□ -1.35
NF1-218ENST00000577967 TNIKQ9UKE5 1360 aa6.62□□□□□ -1.35
NF1-218ENST00000577967 CUX2O14529 1486 aa6.62□□□□□ -1.35
NF1-218ENST00000577967 CDK11AQ9UQ88 783 aaPredicted RBP6.62□□□□□ -1.35
NF1-218ENST00000577967 ZNF316A6NFI3 1004 aaPredicted RBP6.6□□□□□ -1.35
NF1-218ENST00000577967 MTUS2Q5JR59 1369 aa6.59□□□□□ -1.35
NF1-218ENST00000577967 ERICH6Q7L0X2 663 aa6.57□□□□□ -1.36
NF1-218ENST00000577967 CARMIL1Q5VZK9 1371 aa6.57□□□□□ -1.36
NF1-218ENST00000577967 UNC13AQ9UPW8 1703 aa6.55□□□□□ -1.36
NF1-218ENST00000577967 RUSC2Q8N2Y8 1516 aa6.55□□□□□ -1.36
NF1-218ENST00000577967 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.55□□□□□ -1.36
NF1-218ENST00000577967 PDS5BQ9NTI5 1447 aa6.55□□□□□ -1.36
NF1-218ENST00000577967 KCNH8Q96L42 1107 aa6.54□□□□□ -1.36
NF1-218ENST00000577967 RRP7BPQ9NSQ0 103 aa6.54□□□□□ -1.36
NF1-218ENST00000577967 ANP32CO43423 234 aa6.54□□□□□ -1.36
NF1-218ENST00000577967 CADPSQ9ULU8 1353 aa6.54□□□□□ -1.36
NF1-218ENST00000577967 NPM1P06748 294 aaKnown RBP eCLIP6.54□□□□□ -1.36
NF1-218ENST00000577967 TONSLQ96HA7 1378 aa6.52□□□□□ -1.36
NF1-218ENST00000577967 PLPPR3Q6T4P5 718 aa6.52□□□□□ -1.37
NF1-218ENST00000577967 FANCD2Q9BXW9 1451 aa6.52□□□□□ -1.37
NF1-218ENST00000577967 TDRD9Q8NDG6 1382 aaKnown RBP6.52□□□□□ -1.37
NF1-218ENST00000577967 BCANQ96GW7 911 aa6.52□□□□□ -1.37
NF1-218ENST00000577967 CC2D2AQ9P2K1 1620 aa6.51□□□□□ -1.37
NF1-218ENST00000577967 RAPGEF2Q9Y4G8 1499 aa6.5□□□□□ -1.37
NF1-218ENST00000577967 CHGAP10645 457 aaKnown RBP6.5□□□□□ -1.37
NF1-218ENST00000577967 BICRAQ9NZM4 1560 aa6.49□□□□□ -1.37
NF1-218ENST00000577967 PLEKHD1A6NEE1 506 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms