RNA–Protein interactions for RNA: ENST00000550020.6

TMEM116-209, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-209ENST00000550020 NISCHQ9Y2I1 1504 aa19.09■□□□□ 0.65
TMEM116-209ENST00000550020 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
TMEM116-209ENST00000550020 ZCCHC6Q5VYS8 1495 aaKnown RBP16.11■□□□□ 0.17
TMEM116-209ENST00000550020 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
TMEM116-209ENST00000550020 SHROOM4Q9ULL8 1493 aa15.78■□□□□ 0.12
TMEM116-209ENST00000550020 DCAF8L2P0C7V8 631 aa15.65■□□□□ 0.1
TMEM116-209ENST00000550020 MYO15BQ96JP2 1530 aa15.54■□□□□ 0.08
TMEM116-209ENST00000550020 SUPT5HO00267 1087 aaKnown RBP15.45■□□□□ 0.06
TMEM116-209ENST00000550020 NACADO15069 1562 aa15.29■□□□□ 0.04
TMEM116-209ENST00000550020 ABCC9O60706 1549 aa15.17■□□□□ 0.02
TMEM116-209ENST00000550020 SCRIBQ14160 1630 aa15.14■□□□□ 0.01
TMEM116-209ENST00000550020 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
TMEM116-209ENST00000550020 CHIC1Q5VXU3 224 aa15□□□□□ -0.01
TMEM116-209ENST00000550020 RSF1Q96T23 1441 aaPredicted RBP14.95□□□□□ -0.02
TMEM116-209ENST00000550020 BAZ1AQ9NRL2 1556 aaPredicted RBP14.76□□□□□ -0.05
TMEM116-209ENST00000550020 CECR2Q9BXF3 1484 aa14.72□□□□□ -0.05
TMEM116-209ENST00000550020 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.05
TMEM116-209ENST00000550020 TRIM41Q8WV44 630 aa14.58□□□□□ -0.08
TMEM116-209ENST00000550020 WIZO95785 1651 aa14.58□□□□□ -0.08
TMEM116-209ENST00000550020 SMARCA4P51532 1647 aa14.57□□□□□ -0.08
TMEM116-209ENST00000550020 UNC13AQ9UPW8 1703 aa14.57□□□□□ -0.08
TMEM116-209ENST00000550020 TOP2AP11388 1531 aaKnown RBP14.54□□□□□ -0.08
TMEM116-209ENST00000550020 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
TMEM116-209ENST00000550020 PEG3Q9GZU2 1588 aa14.41□□□□□ -0.1
TMEM116-209ENST00000550020 LOC105371045A0A1W2PR82 267 aa14.37□□□□□ -0.11
TMEM116-209ENST00000550020 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
TMEM116-209ENST00000550020 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
TMEM116-209ENST00000550020 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
TMEM116-209ENST00000550020 EIF4G1Q04637 1599 aaKnown RBP14.36□□□□□ -0.11
TMEM116-209ENST00000550020 ATAD2BQ9ULI0 1458 aa14.25□□□□□ -0.13
TMEM116-209ENST00000550020 BAZ1BQ9UIG0 1483 aaKnown RBP14.24□□□□□ -0.13
TMEM116-209ENST00000550020 EEA1Q15075 1411 aa14.23□□□□□ -0.13
TMEM116-209ENST00000550020 FAM9AQ8IZU1 332 aaPredicted RBP14.22□□□□□ -0.13
TMEM116-209ENST00000550020 TRIM26Q12899 539 aaPredicted RBP14.21□□□□□ -0.13
TMEM116-209ENST00000550020 PCGF6Q9BYE7 350 aa14.21□□□□□ -0.13
TMEM116-209ENST00000550020 HRCP23327 699 aa14.18□□□□□ -0.14
TMEM116-209ENST00000550020 ABCC8Q09428 1581 aa14.13□□□□□ -0.15
TMEM116-209ENST00000550020 HMGXB3Q12766 1538 aa14.11□□□□□ -0.15
TMEM116-209ENST00000550020 WRNQ14191 1432 aaPredicted RBP eCLIP14.11□□□□□ -0.15
TMEM116-209ENST00000550020 NCAPD3P42695 1498 aa14.1□□□□□ -0.15
TMEM116-209ENST00000550020 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
TMEM116-209ENST00000550020 TNIKQ9UKE5 1360 aa14.01□□□□□ -0.17
TMEM116-209ENST00000550020 ZEB1P37275 1124 aaPredicted RBP13.99□□□□□ -0.17
TMEM116-209ENST00000550020 GOLGA3Q08378 1498 aa13.98□□□□□ -0.17
TMEM116-209ENST00000550020 SOGA1O94964 1423 aa13.98□□□□□ -0.17
TMEM116-209ENST00000550020 CEP164Q9UPV0 1460 aa13.94□□□□□ -0.18
TMEM116-209ENST00000550020 EHMT2Q96KQ7 1210 aa13.94□□□□□ -0.18
TMEM116-209ENST00000550020 SYNJ1O43426 1573 aa13.93□□□□□ -0.18
TMEM116-209ENST00000550020 CEP162Q5TB80 1403 aa13.91□□□□□ -0.18
TMEM116-209ENST00000550020 KIF21BO75037 1637 aa13.91□□□□□ -0.18
TMEM116-209ENST00000550020 TOP2BQ02880 1626 aa13.91□□□□□ -0.18
TMEM116-209ENST00000550020 UBTFP17480 764 aaKnown RBP13.89□□□□□ -0.19
TMEM116-209ENST00000550020 BIVM-ERCC5R4GMW8 1640 aa13.88□□□□□ -0.19
TMEM116-209ENST00000550020 CFTRP13569 1480 aa13.87□□□□□ -0.19
TMEM116-209ENST00000550020 RUSC2Q8N2Y8 1516 aa13.85□□□□□ -0.19
TMEM116-209ENST00000550020 PRDM2Q13029 1718 aa13.77□□□□□ -0.21
TMEM116-209ENST00000550020 ERICH3Q5RHP9 1530 aa13.77□□□□□ -0.21
TMEM116-209ENST00000550020 CADPSQ9ULU8 1353 aa13.77□□□□□ -0.21
TMEM116-209ENST00000550020 KIF27Q86VH2 1401 aa13.76□□□□□ -0.21
TMEM116-209ENST00000550020 CLIP1P30622 1438 aa13.75□□□□□ -0.21
TMEM116-209ENST00000550020 CUX1P39880 1505 aa13.74□□□□□ -0.21
TMEM116-209ENST00000550020 CC2D2AQ9P2K1 1620 aa13.73□□□□□ -0.21
TMEM116-209ENST00000550020 PRXQ9BXM0 1461 aa13.7□□□□□ -0.22
TMEM116-209ENST00000550020 APLP2Q06481 763 aa13.7□□□□□ -0.22
TMEM116-209ENST00000550020 RAPGEF2Q9Y4G8 1499 aa13.69□□□□□ -0.22
TMEM116-209ENST00000550020 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
TMEM116-209ENST00000550020 PPARGC1BQ86YN6 1023 aaKnown RBP13.64□□□□□ -0.23
TMEM116-209ENST00000550020 FANCD2Q9BXW9 1451 aa13.6□□□□□ -0.23
TMEM116-209ENST00000550020 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
TMEM116-209ENST00000550020 CUX2O14529 1486 aa13.57□□□□□ -0.24
TMEM116-209ENST00000550020 FGD5Q6ZNL6 1462 aa13.56□□□□□ -0.24
TMEM116-209ENST00000550020 DNMBPQ6XZF7 1577 aa13.56□□□□□ -0.24
TMEM116-209ENST00000550020 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
TMEM116-209ENST00000550020 IGF1RP08069 1367 aa13.53□□□□□ -0.24
TMEM116-209ENST00000550020 CARMIL1Q5VZK9 1371 aa13.5□□□□□ -0.25
TMEM116-209ENST00000550020 PDS5BQ9NTI5 1447 aa13.49□□□□□ -0.25
TMEM116-209ENST00000550020 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
TMEM116-209ENST00000550020 ARAP1Q96P48 1450 aa13.48□□□□□ -0.25
TMEM116-209ENST00000550020 TOPBP1Q92547 1522 aa13.48□□□□□ -0.25
TMEM116-209ENST00000550020 TTBK1Q5TCY1 1321 aaPredicted RBP13.47□□□□□ -0.25
TMEM116-209ENST00000550020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.47□□□□□ -0.25
TMEM116-209ENST00000550020 RANGAP1P46060 587 aaPredicted RBP13.44□□□□□ -0.26
TMEM116-209ENST00000550020 CUL7Q14999 1698 aa13.43□□□□□ -0.26
TMEM116-209ENST00000550020 POLA1P09884 1462 aaPredicted RBP13.42□□□□□ -0.26
TMEM116-209ENST00000550020 ARHGAP35Q9NRY4 1499 aa13.42□□□□□ -0.26
TMEM116-209ENST00000550020 MAP3K1Q13233 1512 aa13.42□□□□□ -0.26
TMEM116-209ENST00000550020 FHAD1B1AJZ9 1412 aa13.4□□□□□ -0.26
TMEM116-209ENST00000550020 NESP48681 1621 aa13.39□□□□□ -0.27
TMEM116-209ENST00000550020 EFCAB5A4FU69 1503 aa13.38□□□□□ -0.27
TMEM116-209ENST00000550020 RAD54L2Q9Y4B4 1467 aa13.36□□□□□ -0.27
TMEM116-209ENST00000550020 URB2Q14146 1524 aaKnown RBP13.35□□□□□ -0.27
TMEM116-209ENST00000550020 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
TMEM116-209ENST00000550020 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
TMEM116-209ENST00000550020 RRBP1Q9P2E9 1410 aaKnown RBP13.33□□□□□ -0.28
TMEM116-209ENST00000550020 WDR97A6NE52 1622 aa13.31□□□□□ -0.28
TMEM116-209ENST00000550020 AQRO60306 1485 aaKnown RBP eCLIP13.3□□□□□ -0.28
TMEM116-209ENST00000550020 TIAM1Q13009 1591 aa13.29□□□□□ -0.28
TMEM116-209ENST00000550020 ABCA5Q8WWZ7 1642 aa13.29□□□□□ -0.28
TMEM116-209ENST00000550020 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
TMEM116-209ENST00000550020 KANK4Q5T7N3 995 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms