RNA–Protein interactions for RNA: ENST00000549537.6

TMEM116-208, Transcript of transmembrane protein 116, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TMEM116, Length 1,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-208ENST00000549537 AEBP2Q6ZN18 517 aaPredicted RBP23.24■■□□□ 1.31
TMEM116-208ENST00000549537 CHIC1Q5VXU3 224 aa22■■□□□ 1.11
TMEM116-208ENST00000549537 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
TMEM116-208ENST00000549537 PHF23Q9BUL5 403 aaPredicted RBP19.68■□□□□ 0.74
TMEM116-208ENST00000549537 FOXD1Q16676 465 aa18.58■□□□□ 0.56
TMEM116-208ENST00000549537 MSH5O43196 834 aa17.62■□□□□ 0.41
TMEM116-208ENST00000549537 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
TMEM116-208ENST00000549537 POTEDQ86YR6 584 aa17.38■□□□□ 0.37
TMEM116-208ENST00000549537 PIAS4Q8N2W9 510 aaPredicted RBP17.37■□□□□ 0.37
TMEM116-208ENST00000549537 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
TMEM116-208ENST00000549537 ADRA2BP18089 450 aa17.12■□□□□ 0.33
TMEM116-208ENST00000549537 NISCHQ9Y2I1 1504 aa16.56■□□□□ 0.24
TMEM116-208ENST00000549537 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
TMEM116-208ENST00000549537 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
TMEM116-208ENST00000549537 MAPK8IP2Q13387 824 aaPredicted RBP15.76■□□□□ 0.11
TMEM116-208ENST00000549537 PPP4R3CPQ6ZMV5 832 aa15.31■□□□□ 0.04
TMEM116-208ENST00000549537 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
TMEM116-208ENST00000549537 CACNB1Q02641 598 aaPredicted RBP15.18■□□□□ 0.02
TMEM116-208ENST00000549537 HOXD11P31277 338 aaPredicted RBP15.17■□□□□ 0.02
TMEM116-208ENST00000549537 CNKSR2Q8WXI2 1034 aa15.13■□□□□ 0.01
TMEM116-208ENST00000549537 RNF216Q9NWF9 866 aaPredicted RBP15.04■□□□□ -0
TMEM116-208ENST00000549537 RNF39Q9H2S5 420 aa14.92□□□□□ -0.02
TMEM116-208ENST00000549537 CCDC180Q9P1Z9 1646 aa14.81□□□□□ -0.04
TMEM116-208ENST00000549537 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
TMEM116-208ENST00000549537 DNAJC5BQ9UF47 199 aa14.79□□□□□ -0.04
TMEM116-208ENST00000549537 C1QBPQ07021 282 aaKnown RBP14.78□□□□□ -0.04
TMEM116-208ENST00000549537 ABCC9O60706 1549 aa14.61□□□□□ -0.07
TMEM116-208ENST00000549537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.48□□□□□ -0.09
TMEM116-208ENST00000549537 NPM3O75607 178 aaKnown RBP14.41□□□□□ -0.1
TMEM116-208ENST00000549537 U3KPZ7 1027 aaPredicted RBP14.06□□□□□ -0.16
TMEM116-208ENST00000549537 RB1CC1Q8TDY2 1594 aa13.99□□□□□ -0.17
TMEM116-208ENST00000549537 CAPN15O75808 1086 aa13.97□□□□□ -0.17
TMEM116-208ENST00000549537 NACADO15069 1562 aa13.95□□□□□ -0.18
TMEM116-208ENST00000549537 KCNA4P22459 653 aa13.93□□□□□ -0.18
TMEM116-208ENST00000549537 DSG3P32926 999 aa13.9□□□□□ -0.18
TMEM116-208ENST00000549537 APLP2Q06481 763 aa13.89□□□□□ -0.19
TMEM116-208ENST00000549537 SPINK5Q9NQ38 1064 aaPredicted RBP13.89□□□□□ -0.19
TMEM116-208ENST00000549537 MYO15BQ96JP2 1530 aa13.84□□□□□ -0.19
TMEM116-208ENST00000549537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.8□□□□□ -0.2
TMEM116-208ENST00000549537 HNRNPUL2Q1KMD3 747 aaKnown RBP13.8□□□□□ -0.2
TMEM116-208ENST00000549537 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
TMEM116-208ENST00000549537 DCAF8L2P0C7V8 631 aa13.78□□□□□ -0.2
TMEM116-208ENST00000549537 ZCCHC6Q5VYS8 1495 aaKnown RBP13.78□□□□□ -0.2
TMEM116-208ENST00000549537 ZNF219Q9P2Y4 722 aaPredicted RBP13.74□□□□□ -0.21
TMEM116-208ENST00000549537 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
TMEM116-208ENST00000549537 UNC13AQ9UPW8 1703 aa13.72□□□□□ -0.21
TMEM116-208ENST00000549537 TRHP20396 242 aaPredicted RBP13.68□□□□□ -0.22
TMEM116-208ENST00000549537 SAMD1Q6SPF0 538 aaPredicted RBP13.66□□□□□ -0.22
TMEM116-208ENST00000549537 POTEHQ6S545 545 aa13.63□□□□□ -0.23
TMEM116-208ENST00000549537 BICRAQ9NZM4 1560 aa13.62□□□□□ -0.23
TMEM116-208ENST00000549537 PABPN1Q86U42 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
TMEM116-208ENST00000549537 ABCB7O75027 752 aa13.55□□□□□ -0.24
TMEM116-208ENST00000549537 SCRIBQ14160 1630 aa13.47□□□□□ -0.25
TMEM116-208ENST00000549537 SHROOM4Q9ULL8 1493 aa13.44□□□□□ -0.26
TMEM116-208ENST00000549537 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
TMEM116-208ENST00000549537 RBM42Q9BTD8 480 aaKnown RBP13.41□□□□□ -0.26
TMEM116-208ENST00000549537 POLA2Q14181 598 aa13.27□□□□□ -0.29
TMEM116-208ENST00000549537 EIF4G1Q04637 1599 aaKnown RBP13.25□□□□□ -0.29
TMEM116-208ENST00000549537 CC2D2AQ9P2K1 1620 aa13.24□□□□□ -0.29
TMEM116-208ENST00000549537 SLC4A1APQ9BWU0 796 aaKnown RBP13.19□□□□□ -0.3
TMEM116-208ENST00000549537 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
TMEM116-208ENST00000549537 CECR2Q9BXF3 1484 aa13.16□□□□□ -0.3
TMEM116-208ENST00000549537 ZBTB12Q9Y330 459 aaPredicted RBP13.12□□□□□ -0.31
TMEM116-208ENST00000549537 CHRDL2Q6WN34 429 aa13.08□□□□□ -0.32
TMEM116-208ENST00000549537 DNAJC5Q9H3Z4 198 aa13.02□□□□□ -0.33
TMEM116-208ENST00000549537 AKT1S1Q96B36 256 aa13.01□□□□□ -0.33
TMEM116-208ENST00000549537 ATF5Q9Y2D1 282 aaPredicted RBP12.96□□□□□ -0.33
TMEM116-208ENST00000549537 SMARCA4P51532 1647 aa12.89□□□□□ -0.35
TMEM116-208ENST00000549537 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
TMEM116-208ENST00000549537 ATAD2BQ9ULI0 1458 aa12.86□□□□□ -0.35
TMEM116-208ENST00000549537 ATXN8OSP0DMR3 200 aa12.84□□□□□ -0.35
TMEM116-208ENST00000549537 BAZ1AQ9NRL2 1556 aaPredicted RBP12.83□□□□□ -0.36
TMEM116-208ENST00000549537 SMARCA2P51531 1590 aa12.82□□□□□ -0.36
TMEM116-208ENST00000549537 REM2Q8IYK8 340 aaPredicted RBP12.81□□□□□ -0.36
TMEM116-208ENST00000549537 OSCARQ8IYS5 282 aa12.81□□□□□ -0.36
TMEM116-208ENST00000549537 HMGXB3Q12766 1538 aa12.81□□□□□ -0.36
TMEM116-208ENST00000549537 PEG3Q9GZU2 1588 aa12.79□□□□□ -0.36
TMEM116-208ENST00000549537 MROH2BQ7Z745 1585 aa12.77□□□□□ -0.37
TMEM116-208ENST00000549537 ZBTB22O15209 634 aa12.73□□□□□ -0.37
TMEM116-208ENST00000549537 BAZ1BQ9UIG0 1483 aaKnown RBP12.72□□□□□ -0.37
TMEM116-208ENST00000549537 CUX2O14529 1486 aa12.71□□□□□ -0.38
TMEM116-208ENST00000549537 FBLN2P98095 1184 aa12.69□□□□□ -0.38
TMEM116-208ENST00000549537 PIP4P2Q8N4L2 257 aa12.69□□□□□ -0.38
TMEM116-208ENST00000549537 SP7Q8TDD2 431 aaPredicted RBP12.69□□□□□ -0.38
TMEM116-208ENST00000549537 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
TMEM116-208ENST00000549537 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
TMEM116-208ENST00000549537 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
TMEM116-208ENST00000549537 SPDYE2Q495Y8 402 aa12.64□□□□□ -0.39
TMEM116-208ENST00000549537 FXR2P51116 673 aaKnown RBP eCLIP12.62□□□□□ -0.39
TMEM116-208ENST00000549537 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
TMEM116-208ENST00000549537 NESP48681 1621 aa12.62□□□□□ -0.39
TMEM116-208ENST00000549537 WIZO95785 1651 aa12.61□□□□□ -0.39
TMEM116-208ENST00000549537 HAX1O00165 279 aa12.57□□□□□ -0.4
TMEM116-208ENST00000549537 ERCC6Q03468 1493 aa12.57□□□□□ -0.4
TMEM116-208ENST00000549537 LAMC3Q9Y6N6 1575 aa12.56□□□□□ -0.4
TMEM116-208ENST00000549537 RSF1Q96T23 1441 aaPredicted RBP12.55□□□□□ -0.4
TMEM116-208ENST00000549537 THOC2Q8NI27 1593 aaKnown RBP12.49□□□□□ -0.41
TMEM116-208ENST00000549537 SPDYE1Q8NFV5 336 aaPredicted RBP12.48□□□□□ -0.41
TMEM116-208ENST00000549537 CADPSQ9ULU8 1353 aa12.47□□□□□ -0.41
TMEM116-208ENST00000549537 KIF21AQ7Z4S6 1674 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms