RNA–Protein interactions for RNA: ENST00000531104.1

SRPRA-205, Transcript of SRP receptor subunit alpha, humanhuman

TSL 2

Gene SRPRA, Length 542 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPRA-205ENST00000531104 NISCHQ9Y2I1 1504 aa24.81■■□□□ 1.56
SRPRA-205ENST00000531104 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
SRPRA-205ENST00000531104 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
SRPRA-205ENST00000531104 DCAF1Q9Y4B6 1507 aa20.58■□□□□ 0.89
SRPRA-205ENST00000531104 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
SRPRA-205ENST00000531104 ABCC9O60706 1549 aa20.27■□□□□ 0.83
SRPRA-205ENST00000531104 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
SRPRA-205ENST00000531104 SHROOM4Q9ULL8 1493 aa20.11■□□□□ 0.81
SRPRA-205ENST00000531104 NACADO15069 1562 aa20.11■□□□□ 0.81
SRPRA-205ENST00000531104 AEBP2Q6ZN18 517 aaPredicted RBP20.02■□□□□ 0.8
SRPRA-205ENST00000531104 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.77
SRPRA-205ENST00000531104 SCRIBQ14160 1630 aa19.8■□□□□ 0.76
SRPRA-205ENST00000531104 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
SRPRA-205ENST00000531104 UNC13AQ9UPW8 1703 aa19.5■□□□□ 0.71
SRPRA-205ENST00000531104 SUPT5HO00267 1087 aaKnown RBP19.38■□□□□ 0.69
SRPRA-205ENST00000531104 BICRAQ9NZM4 1560 aa19.34■□□□□ 0.69
SRPRA-205ENST00000531104 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
SRPRA-205ENST00000531104 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
SRPRA-205ENST00000531104 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
SRPRA-205ENST00000531104 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
SRPRA-205ENST00000531104 PABPN1Q86U42 306 aaKnown RBP eCLIP19.1■□□□□ 0.65
SRPRA-205ENST00000531104 SMARCA4P51532 1647 aa19.04■□□□□ 0.64
SRPRA-205ENST00000531104 WIZO95785 1651 aa18.98■□□□□ 0.63
SRPRA-205ENST00000531104 PEG3Q9GZU2 1588 aa18.87■□□□□ 0.61
SRPRA-205ENST00000531104 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
SRPRA-205ENST00000531104 ATAD2BQ9ULI0 1458 aa18.71■□□□□ 0.59
SRPRA-205ENST00000531104 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
SRPRA-205ENST00000531104 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
SRPRA-205ENST00000531104 CCDC88BA6NC98 1476 aa18.61■□□□□ 0.57
SRPRA-205ENST00000531104 NCAPD3P42695 1498 aa18.57■□□□□ 0.56
SRPRA-205ENST00000531104 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
SRPRA-205ENST00000531104 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
SRPRA-205ENST00000531104 CC2D2AQ9P2K1 1620 aa18.4■□□□□ 0.54
SRPRA-205ENST00000531104 TRIM41Q8WV44 630 aa18.25■□□□□ 0.51
SRPRA-205ENST00000531104 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
SRPRA-205ENST00000531104 CFTRP13569 1480 aa18.16■□□□□ 0.5
SRPRA-205ENST00000531104 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.49
SRPRA-205ENST00000531104 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
SRPRA-205ENST00000531104 CADPSQ9ULU8 1353 aa18.06■□□□□ 0.48
SRPRA-205ENST00000531104 SYNJ1O43426 1573 aa18.04■□□□□ 0.48
SRPRA-205ENST00000531104 TOP2BQ02880 1626 aa17.98■□□□□ 0.47
SRPRA-205ENST00000531104 BIVM-ERCC5R4GMW8 1640 aa17.98■□□□□ 0.47
SRPRA-205ENST00000531104 LOC105371045A0A1W2PR82 267 aa17.92■□□□□ 0.46
SRPRA-205ENST00000531104 EEA1Q15075 1411 aa17.9■□□□□ 0.46
SRPRA-205ENST00000531104 CUX1P39880 1505 aa17.9■□□□□ 0.46
SRPRA-205ENST00000531104 LAMC3Q9Y6N6 1575 aa17.9■□□□□ 0.46
SRPRA-205ENST00000531104 DNAJC5BQ9UF47 199 aa17.88■□□□□ 0.45
SRPRA-205ENST00000531104 SOGA1O94964 1423 aa17.88■□□□□ 0.45
SRPRA-205ENST00000531104 FAM9AQ8IZU1 332 aaPredicted RBP17.85■□□□□ 0.45
SRPRA-205ENST00000531104 NESP48681 1621 aa17.84■□□□□ 0.45
SRPRA-205ENST00000531104 FANCD2Q9BXW9 1451 aa17.84■□□□□ 0.45
SRPRA-205ENST00000531104 RUSC2Q8N2Y8 1516 aa17.82■□□□□ 0.44
SRPRA-205ENST00000531104 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
SRPRA-205ENST00000531104 PDS5BQ9NTI5 1447 aa17.72■□□□□ 0.43
SRPRA-205ENST00000531104 DNMBPQ6XZF7 1577 aa17.72■□□□□ 0.43
SRPRA-205ENST00000531104 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
SRPRA-205ENST00000531104 TOPBP1Q92547 1522 aa17.68■□□□□ 0.42
SRPRA-205ENST00000531104 KIF21BO75037 1637 aa17.68■□□□□ 0.42
SRPRA-205ENST00000531104 FGD5Q6ZNL6 1462 aa17.67■□□□□ 0.42
SRPRA-205ENST00000531104 URB2Q14146 1524 aaKnown RBP17.64■□□□□ 0.41
SRPRA-205ENST00000531104 KIF21AQ7Z4S6 1674 aa17.64■□□□□ 0.41
SRPRA-205ENST00000531104 KIF27Q86VH2 1401 aa17.62■□□□□ 0.41
SRPRA-205ENST00000531104 GOLGA3Q08378 1498 aa17.62■□□□□ 0.41
SRPRA-205ENST00000531104 TNIKQ9UKE5 1360 aa17.61■□□□□ 0.41
SRPRA-205ENST00000531104 POLA1P09884 1462 aaPredicted RBP17.59■□□□□ 0.41
SRPRA-205ENST00000531104 PRXQ9BXM0 1461 aa17.58■□□□□ 0.41
SRPRA-205ENST00000531104 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
SRPRA-205ENST00000531104 ERICH3Q5RHP9 1530 aa17.55■□□□□ 0.4
SRPRA-205ENST00000531104 CUX2O14529 1486 aa17.55■□□□□ 0.4
SRPRA-205ENST00000531104 EHMT2Q96KQ7 1210 aa17.53■□□□□ 0.4
SRPRA-205ENST00000531104 WDR97A6NE52 1622 aa17.52■□□□□ 0.4
SRPRA-205ENST00000531104 MRC2Q9UBG0 1479 aa17.51■□□□□ 0.39
SRPRA-205ENST00000531104 RAPGEF2Q9Y4G8 1499 aa17.51■□□□□ 0.39
SRPRA-205ENST00000531104 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
SRPRA-205ENST00000531104 IGF1RP08069 1367 aa17.5■□□□□ 0.39
SRPRA-205ENST00000531104 CEP162Q5TB80 1403 aa17.47■□□□□ 0.39
SRPRA-205ENST00000531104 WDR62O43379 1518 aa17.45■□□□□ 0.38
SRPRA-205ENST00000531104 TARBP1Q13395 1621 aaKnown RBP17.43■□□□□ 0.38
SRPRA-205ENST00000531104 UBTFP17480 764 aaKnown RBP17.43■□□□□ 0.38
SRPRA-205ENST00000531104 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
SRPRA-205ENST00000531104 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
SRPRA-205ENST00000531104 CARMIL1Q5VZK9 1371 aa17.38■□□□□ 0.37
SRPRA-205ENST00000531104 CUL7Q14999 1698 aa17.36■□□□□ 0.37
SRPRA-205ENST00000531104 ERCC6Q03468 1493 aa17.34■□□□□ 0.37
SRPRA-205ENST00000531104 GAPVD1Q14C86 1478 aa17.32■□□□□ 0.36
SRPRA-205ENST00000531104 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
SRPRA-205ENST00000531104 CLIP1P30622 1438 aa17.31■□□□□ 0.36
SRPRA-205ENST00000531104 TDRD9Q8NDG6 1382 aaKnown RBP17.3■□□□□ 0.36
SRPRA-205ENST00000531104 PHF23Q9BUL5 403 aaPredicted RBP17.28■□□□□ 0.36
SRPRA-205ENST00000531104 PBRM1Q86U86 1689 aa17.23■□□□□ 0.35
SRPRA-205ENST00000531104 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.34
SRPRA-205ENST00000531104 AQRO60306 1485 aaKnown RBP eCLIP17.19■□□□□ 0.34
SRPRA-205ENST00000531104 GRIN2BQ13224 1484 aa17.19■□□□□ 0.34
SRPRA-205ENST00000531104 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
SRPRA-205ENST00000531104 ZNF608Q9ULD9 1512 aaPredicted RBP17.19■□□□□ 0.34
SRPRA-205ENST00000531104 TRIM26Q12899 539 aaPredicted RBP17.18■□□□□ 0.34
SRPRA-205ENST00000531104 ADAMTS12P58397 1594 aa17.17■□□□□ 0.34
SRPRA-205ENST00000531104 ARHGAP35Q9NRY4 1499 aa17.17■□□□□ 0.34
SRPRA-205ENST00000531104 FHAD1B1AJZ9 1412 aa17.16■□□□□ 0.34
SRPRA-205ENST00000531104 CTTNBP2Q8WZ74 1663 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms