Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CCHCR1Q8TD31 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CCHCR1Q8TD31 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCHCR1Q8TD31 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.32■■□□□ 1.8
CCHCR1Q8TD31 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.32■■□□□ 1.8
CCHCR1Q8TD31 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CCHCR1Q8TD31 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.31■■□□□ 1.8
CCHCR1Q8TD31 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCHCR1Q8TD31 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCHCR1Q8TD31 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCHCR1Q8TD31 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCHCR1Q8TD31 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCHCR1Q8TD31 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CCHCR1Q8TD31 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCHCR1Q8TD31 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCHCR1Q8TD31 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCHCR1Q8TD31 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCHCR1Q8TD31 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCHCR1Q8TD31 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.27■■□□□ 1.8
CCHCR1Q8TD31 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
CCHCR1Q8TD31 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.26■■□□□ 1.79
CCHCR1Q8TD31 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CCHCR1Q8TD31 AC100797.4-201ENST00000631653 1827 ntBASIC26.25■■□□□ 1.79
CCHCR1Q8TD31 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCHCR1Q8TD31 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCHCR1Q8TD31 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCHCR1Q8TD31 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCHCR1Q8TD31 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 MIR6090-201ENST00000622481 60 ntBASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CCHCR1Q8TD31 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CCHCR1Q8TD31 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CCHCR1Q8TD31 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.21■■□□□ 1.79
CCHCR1Q8TD31 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCHCR1Q8TD31 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CCHCR1Q8TD31 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCHCR1Q8TD31 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCHCR1Q8TD31 AP002414.2-202ENST00000590929 1450 ntBASIC26.2■■□□□ 1.78
CCHCR1Q8TD31 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCHCR1Q8TD31 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CCHCR1Q8TD31 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.19■■□□□ 1.78
CCHCR1Q8TD31 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.19■■□□□ 1.78
CCHCR1Q8TD31 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.19■■□□□ 1.78
CCHCR1Q8TD31 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
CCHCR1Q8TD31 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CCHCR1Q8TD31 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CCHCR1Q8TD31 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CCHCR1Q8TD31 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.16■■□□□ 1.78
CCHCR1Q8TD31 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CCHCR1Q8TD31 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CCHCR1Q8TD31 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.16■■□□□ 1.78
CCHCR1Q8TD31 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCHCR1Q8TD31 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.14■■□□□ 1.78
CCHCR1Q8TD31 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCHCR1Q8TD31 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CCHCR1Q8TD31 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CCHCR1Q8TD31 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.14■■□□□ 1.77
CCHCR1Q8TD31 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
CCHCR1Q8TD31 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.13■■□□□ 1.77
CCHCR1Q8TD31 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCHCR1Q8TD31 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CCHCR1Q8TD31 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CCHCR1Q8TD31 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.12■■□□□ 1.77
CCHCR1Q8TD31 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCHCR1Q8TD31 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CCHCR1Q8TD31 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.12■■□□□ 1.77
CCHCR1Q8TD31 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCHCR1Q8TD31 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCHCR1Q8TD31 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CCHCR1Q8TD31 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
CCHCR1Q8TD31 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.1■■□□□ 1.77
CCHCR1Q8TD31 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CCHCR1Q8TD31 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
CCHCR1Q8TD31 DUX4L29-201ENST00000425409 679 ntBASIC26.09■■□□□ 1.77
CCHCR1Q8TD31 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.09■■□□□ 1.77
CCHCR1Q8TD31 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCHCR1Q8TD31 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.08■■□□□ 1.77
CCHCR1Q8TD31 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
CCHCR1Q8TD31 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms