RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 NISCHQ9Y2I1 1504 aa52.77■■■■■ 6.04
RAB40C-204ENST00000538492 CCDC180Q9P1Z9 1646 aa45.09■■■■■ 4.81
RAB40C-204ENST00000538492 SHROOM4Q9ULL8 1493 aa44.68■■■■■ 4.74
RAB40C-204ENST00000538492 ZCCHC6Q5VYS8 1495 aaKnown RBP44.56■■■■■ 4.72
RAB40C-204ENST00000538492 DCAF8L2P0C7V8 631 aa43.85■■■■■ 4.61
RAB40C-204ENST00000538492 SUPT5HO00267 1087 aaKnown RBP43.63■■■■■ 4.58
RAB40C-204ENST00000538492 DCAF1Q9Y4B6 1507 aa43.3■■■■■ 4.52
RAB40C-204ENST00000538492 CHIC1Q5VXU3 224 aa42.23■■■■■ 4.35
RAB40C-204ENST00000538492 MYO15BQ96JP2 1530 aa42.19■■■■■ 4.34
RAB40C-204ENST00000538492 SCRIBQ14160 1630 aa42.18■■■■■ 4.34
RAB40C-204ENST00000538492 ABCC9O60706 1549 aa42.05■■■■■ 4.32
RAB40C-204ENST00000538492 NACADO15069 1562 aa41.75■■■■■ 4.27
RAB40C-204ENST00000538492 RSF1Q96T23 1441 aaPredicted RBP41.59■■■■■ 4.25
RAB40C-204ENST00000538492 CECR2Q9BXF3 1484 aa41.17■■■■■ 4.18
RAB40C-204ENST00000538492 RB1CC1Q8TDY2 1594 aa41.16■■■■■ 4.18
RAB40C-204ENST00000538492 MROH2BQ7Z745 1585 aa41■■■■■ 4.15
RAB40C-204ENST00000538492 LOC105371045A0A1W2PR82 267 aa40.96■■■■■ 4.15
RAB40C-204ENST00000538492 WIZO95785 1651 aa40.79■■■■■ 4.12
RAB40C-204ENST00000538492 TRIM41Q8WV44 630 aa40.69■■■■■ 4.1
RAB40C-204ENST00000538492 UNC13AQ9UPW8 1703 aa40.59■■■■■ 4.09
RAB40C-204ENST00000538492 BAZ1AQ9NRL2 1556 aaPredicted RBP40.57■■■■■ 4.08
RAB40C-204ENST00000538492 PCGF6Q9BYE7 350 aa40.52■■■■■ 4.08
RAB40C-204ENST00000538492 FAM9AQ8IZU1 332 aaPredicted RBP40.33■■■■■ 4.05
RAB40C-204ENST00000538492 SMARCA4P51532 1647 aa40.29■■■■■ 4.04
RAB40C-204ENST00000538492 HRCP23327 699 aa40.23■■■■■ 4.03
RAB40C-204ENST00000538492 PABPN1Q86U42 306 aaKnown RBP eCLIP40.13■■■■■ 4.01
RAB40C-204ENST00000538492 TOP2AP11388 1531 aaKnown RBP40.13■■■■■ 4.01
RAB40C-204ENST00000538492 BICRAQ9NZM4 1560 aa40.05■■■■■ 4
RAB40C-204ENST00000538492 EIF4G1Q04637 1599 aaKnown RBP40.04■■■■■ 4
RAB40C-204ENST00000538492 EHMT2Q96KQ7 1210 aa40■■■■□ 3.99
RAB40C-204ENST00000538492 CCDC88BA6NC98 1476 aa39.94■■■■□ 3.98
RAB40C-204ENST00000538492 SMARCA2P51531 1590 aa39.9■■■■□ 3.98
RAB40C-204ENST00000538492 TRIM26Q12899 539 aaPredicted RBP39.84■■■■□ 3.97
RAB40C-204ENST00000538492 ABCC8Q09428 1581 aa39.73■■■■□ 3.95
RAB40C-204ENST00000538492 PEG3Q9GZU2 1588 aa39.52■■■■□ 3.92
RAB40C-204ENST00000538492 PPARGC1BQ86YN6 1023 aaKnown RBP39.48■■■■□ 3.91
RAB40C-204ENST00000538492 ATAD2BQ9ULI0 1458 aa39.32■■■■□ 3.89
RAB40C-204ENST00000538492 SOGA1O94964 1423 aa39.25■■■■□ 3.87
RAB40C-204ENST00000538492 BAZ1BQ9UIG0 1483 aaKnown RBP39.21■■■■□ 3.87
RAB40C-204ENST00000538492 WRNQ14191 1432 aaPredicted RBP eCLIP39.09■■■■□ 3.85
RAB40C-204ENST00000538492 RUSC2Q8N2Y8 1516 aa39.08■■■■□ 3.85
RAB40C-204ENST00000538492 CSRNP3Q8WYN3 585 aa38.99■■■■□ 3.83
RAB40C-204ENST00000538492 EEA1Q15075 1411 aa38.99■■■■□ 3.83
RAB40C-204ENST00000538492 SYNJ1O43426 1573 aa38.93■■■■□ 3.82
RAB40C-204ENST00000538492 CEP162Q5TB80 1403 aa38.89■■■■□ 3.82
RAB40C-204ENST00000538492 TNIKQ9UKE5 1360 aa38.85■■■■□ 3.81
RAB40C-204ENST00000538492 UBTFP17480 764 aaKnown RBP38.82■■■■□ 3.81
RAB40C-204ENST00000538492 ZEB1P37275 1124 aaPredicted RBP38.77■■■■□ 3.8
RAB40C-204ENST00000538492 GOLGA3Q08378 1498 aa38.72■■■■□ 3.79
RAB40C-204ENST00000538492 NCAPD3P42695 1498 aa38.62■■■■□ 3.77
RAB40C-204ENST00000538492 TTBK1Q5TCY1 1321 aaPredicted RBP38.61■■■■□ 3.77
RAB40C-204ENST00000538492 HMGXB3Q12766 1538 aa38.6■■■■□ 3.77
RAB40C-204ENST00000538492 CEP164Q9UPV0 1460 aa38.54■■■■□ 3.76
RAB40C-204ENST00000538492 KIF21BO75037 1637 aa38.5■■■■□ 3.75
RAB40C-204ENST00000538492 TOP2BQ02880 1626 aa38.49■■■■□ 3.75
RAB40C-204ENST00000538492 BIVM-ERCC5R4GMW8 1640 aa38.36■■■■□ 3.73
RAB40C-204ENST00000538492 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.36■■■■□ 3.73
RAB40C-204ENST00000538492 RAPGEF2Q9Y4G8 1499 aa38.32■■■■□ 3.73
RAB40C-204ENST00000538492 CLIP1P30622 1438 aa38.26■■■■□ 3.72
RAB40C-204ENST00000538492 CCER1Q8TC90 406 aaPredicted RBP38.23■■■■□ 3.71
RAB40C-204ENST00000538492 CFTRP13569 1480 aa38.21■■■■□ 3.71
RAB40C-204ENST00000538492 CUX1P39880 1505 aa38.2■■■■□ 3.71
RAB40C-204ENST00000538492 RANGAP1P46060 587 aaPredicted RBP38.16■■■■□ 3.7
RAB40C-204ENST00000538492 VPS8Q8N3P4 1428 aa38.04■■■■□ 3.68
RAB40C-204ENST00000538492 PRXQ9BXM0 1461 aa37.99■■■■□ 3.67
RAB40C-204ENST00000538492 ERICH3Q5RHP9 1530 aa37.95■■■■□ 3.67
RAB40C-204ENST00000538492 PRDM2Q13029 1718 aa37.94■■■■□ 3.66
RAB40C-204ENST00000538492 KIF27Q86VH2 1401 aa37.92■■■■□ 3.66
RAB40C-204ENST00000538492 CC2D2AQ9P2K1 1620 aa37.89■■■■□ 3.66
RAB40C-204ENST00000538492 APLP2Q06481 763 aa37.86■■■■□ 3.65
RAB40C-204ENST00000538492 CADPSQ9ULU8 1353 aa37.86■■■■□ 3.65
RAB40C-204ENST00000538492 HNRNPUL2Q1KMD3 747 aaKnown RBP37.72■■■■□ 3.63
RAB40C-204ENST00000538492 ARAP1Q96P48 1450 aa37.69■■■■□ 3.62
RAB40C-204ENST00000538492 CUX2O14529 1486 aa37.65■■■■□ 3.62
RAB40C-204ENST00000538492 FGD5Q6ZNL6 1462 aa37.58■■■■□ 3.61
RAB40C-204ENST00000538492 IGF1RP08069 1367 aa37.53■■■■□ 3.6
RAB40C-204ENST00000538492 FANCD2Q9BXW9 1451 aa37.51■■■■□ 3.59
RAB40C-204ENST00000538492 ARHGAP35Q9NRY4 1499 aa37.44■■■■□ 3.58
RAB40C-204ENST00000538492 KANK4Q5T7N3 995 aaPredicted RBP37.43■■■■□ 3.58
RAB40C-204ENST00000538492 CARMIL1Q5VZK9 1371 aa37.37■■■■□ 3.57
RAB40C-204ENST00000538492 NESP48681 1621 aa37.37■■■■□ 3.57
RAB40C-204ENST00000538492 DNMBPQ6XZF7 1577 aa37.27■■■■□ 3.56
RAB40C-204ENST00000538492 RAD54L2Q9Y4B4 1467 aa37.25■■■■□ 3.55
RAB40C-204ENST00000538492 DIEXFQ68CQ4 756 aaKnown RBP37.23■■■■□ 3.55
RAB40C-204ENST00000538492 TOPBP1Q92547 1522 aa37.22■■■■□ 3.55
RAB40C-204ENST00000538492 POLA1P09884 1462 aaPredicted RBP37.19■■■■□ 3.54
RAB40C-204ENST00000538492 ABCA10Q8WWZ4 1543 aa37.12■■■■□ 3.53
RAB40C-204ENST00000538492 RRBP1Q9P2E9 1410 aaKnown RBP37.08■■■■□ 3.53
RAB40C-204ENST00000538492 ZNF316A6NFI3 1004 aaPredicted RBP37.07■■■■□ 3.52
RAB40C-204ENST00000538492 LAMC3Q9Y6N6 1575 aa37.05■■■■□ 3.52
RAB40C-204ENST00000538492 DNAJC5BQ9UF47 199 aa37.01■■■■□ 3.51
RAB40C-204ENST00000538492 P3H3Q8IVL6 736 aa36.99■■■■□ 3.51
RAB40C-204ENST00000538492 URB2Q14146 1524 aaKnown RBP36.98■■■■□ 3.51
RAB40C-204ENST00000538492 CCNB3Q8WWL7 1395 aa36.97■■■■□ 3.51
RAB40C-204ENST00000538492 TIAM1Q13009 1591 aa36.97■■■■□ 3.51
RAB40C-204ENST00000538492 DHX57Q6P158 1386 aaKnown RBP36.91■■■■□ 3.5
RAB40C-204ENST00000538492 ITGAEP38570 1179 aa36.89■■■■□ 3.5
RAB40C-204ENST00000538492 CUL7Q14999 1698 aa36.89■■■■□ 3.5
RAB40C-204ENST00000538492 MAP3K1Q13233 1512 aa36.88■■■■□ 3.49
RAB40C-204ENST00000538492 FHAD1B1AJZ9 1412 aa36.86■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms