RNA–Protein interactions for RNA: ENST00000522719.2

NKX2-1-204, Transcript of NK2 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NKX2-1, Length 1,417 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-204ENST00000522719 NISCHQ9Y2I1 1504 aa60.5■■■■■ 7.28
NKX2-1-204ENST00000522719 CCDC180Q9P1Z9 1646 aa53.42■■■■■ 6.14
NKX2-1-204ENST00000522719 ABCC9O60706 1549 aa51.19■■■■■ 5.79
NKX2-1-204ENST00000522719 ZCCHC6Q5VYS8 1495 aaKnown RBP50.6■■■■■ 5.69
NKX2-1-204ENST00000522719 DCAF1Q9Y4B6 1507 aa50.16■■■■■ 5.62
NKX2-1-204ENST00000522719 DCAF8L2P0C7V8 631 aa50.08■■■■■ 5.61
NKX2-1-204ENST00000522719 MYO15BQ96JP2 1530 aa50.01■■■■■ 5.6
NKX2-1-204ENST00000522719 NACADO15069 1562 aa49.96■■■■■ 5.59
NKX2-1-204ENST00000522719 RB1CC1Q8TDY2 1594 aa49.76■■■■■ 5.56
NKX2-1-204ENST00000522719 SCRIBQ14160 1630 aa48.73■■■■■ 5.39
NKX2-1-204ENST00000522719 UNC13AQ9UPW8 1703 aa48.69■■■■■ 5.39
NKX2-1-204ENST00000522719 SHROOM4Q9ULL8 1493 aa48.32■■■■■ 5.33
NKX2-1-204ENST00000522719 BICRAQ9NZM4 1560 aa48.19■■■■■ 5.3
NKX2-1-204ENST00000522719 PABPN1Q86U42 306 aaKnown RBP eCLIP47.98■■■■■ 5.27
NKX2-1-204ENST00000522719 CECR2Q9BXF3 1484 aa46.97■■■■■ 5.11
NKX2-1-204ENST00000522719 BAZ1AQ9NRL2 1556 aaPredicted RBP46.85■■■■■ 5.09
NKX2-1-204ENST00000522719 EIF4G1Q04637 1599 aaKnown RBP46.84■■■■■ 5.09
NKX2-1-204ENST00000522719 SMARCA4P51532 1647 aa46.75■■■■■ 5.08
NKX2-1-204ENST00000522719 MROH2BQ7Z745 1585 aa46.62■■■■■ 5.05
NKX2-1-204ENST00000522719 RSF1Q96T23 1441 aaPredicted RBP46.46■■■■■ 5.03
NKX2-1-204ENST00000522719 CC2D2AQ9P2K1 1620 aa46.4■■■■■ 5.02
NKX2-1-204ENST00000522719 PEG3Q9GZU2 1588 aa46.3■■■■■ 5
NKX2-1-204ENST00000522719 SMARCA2P51531 1590 aa46.25■■■■■ 5
NKX2-1-204ENST00000522719 ATAD2BQ9ULI0 1458 aa46.21■■■■■ 4.99
NKX2-1-204ENST00000522719 WIZO95785 1651 aa46.2■■■■■ 4.99
NKX2-1-204ENST00000522719 NCAPD3P42695 1498 aa46.06■■■■■ 4.96
NKX2-1-204ENST00000522719 DNAJC5BQ9UF47 199 aa46.04■■■■■ 4.96
NKX2-1-204ENST00000522719 SUPT5HO00267 1087 aaKnown RBP45.99■■■■■ 4.95
NKX2-1-204ENST00000522719 HMGXB3Q12766 1538 aa45.95■■■■■ 4.95
NKX2-1-204ENST00000522719 BAZ1BQ9UIG0 1483 aaKnown RBP45.9■■■■■ 4.94
NKX2-1-204ENST00000522719 TOP2AP11388 1531 aaKnown RBP45.77■■■■■ 4.92
NKX2-1-204ENST00000522719 CCDC88BA6NC98 1476 aa45.21■■■■■ 4.83
NKX2-1-204ENST00000522719 CADPSQ9ULU8 1353 aa44.76■■■■■ 4.76
NKX2-1-204ENST00000522719 LAMC3Q9Y6N6 1575 aa44.71■■■■■ 4.75
NKX2-1-204ENST00000522719 CFTRP13569 1480 aa44.71■■■■■ 4.75
NKX2-1-204ENST00000522719 NESP48681 1621 aa44.59■■■■■ 4.73
NKX2-1-204ENST00000522719 PRDM2Q13029 1718 aa44.57■■■■■ 4.72
NKX2-1-204ENST00000522719 PDS5BQ9NTI5 1447 aa44.35■■■■■ 4.69
NKX2-1-204ENST00000522719 FANCD2Q9BXW9 1451 aa44.24■■■■■ 4.67
NKX2-1-204ENST00000522719 KIF21AQ7Z4S6 1674 aa44.17■■■■■ 4.66
NKX2-1-204ENST00000522719 CEP164Q9UPV0 1460 aa44.1■■■■■ 4.65
NKX2-1-204ENST00000522719 ERCC6Q03468 1493 aa44.07■■■■■ 4.65
NKX2-1-204ENST00000522719 ABCC8Q09428 1581 aa43.85■■■■■ 4.61
NKX2-1-204ENST00000522719 MRC2Q9UBG0 1479 aa43.82■■■■■ 4.61
NKX2-1-204ENST00000522719 WRNQ14191 1432 aaPredicted RBP eCLIP43.79■■■■■ 4.6
NKX2-1-204ENST00000522719 THOC2Q8NI27 1593 aaKnown RBP43.76■■■■■ 4.6
NKX2-1-204ENST00000522719 URB2Q14146 1524 aaKnown RBP43.72■■■■■ 4.59
NKX2-1-204ENST00000522719 DNMBPQ6XZF7 1577 aa43.71■■■■■ 4.59
NKX2-1-204ENST00000522719 CUX1P39880 1505 aa43.69■■■■■ 4.58
NKX2-1-204ENST00000522719 WDR62O43379 1518 aa43.66■■■■■ 4.58
NKX2-1-204ENST00000522719 TOPBP1Q92547 1522 aa43.65■■■■■ 4.58
NKX2-1-204ENST00000522719 SYNJ1O43426 1573 aa43.62■■■■■ 4.57
NKX2-1-204ENST00000522719 TOP2BQ02880 1626 aa43.62■■■■■ 4.57
NKX2-1-204ENST00000522719 BIVM-ERCC5R4GMW8 1640 aa43.62■■■■■ 4.57
NKX2-1-204ENST00000522719 CHIC1Q5VXU3 224 aa43.54■■■■■ 4.56
NKX2-1-204ENST00000522719 TRIM41Q8WV44 630 aa43.43■■■■■ 4.54
NKX2-1-204ENST00000522719 FGD5Q6ZNL6 1462 aa43.38■■■■■ 4.54
NKX2-1-204ENST00000522719 POLA1P09884 1462 aaPredicted RBP43.33■■■■■ 4.53
NKX2-1-204ENST00000522719 CUX2O14529 1486 aa43.28■■■■■ 4.52
NKX2-1-204ENST00000522719 SOGA1O94964 1423 aa43.18■■■■■ 4.5
NKX2-1-204ENST00000522719 IFT140Q96RY7 1462 aa43.14■■■■■ 4.5
NKX2-1-204ENST00000522719 TARBP1Q13395 1621 aaKnown RBP43.12■■■■■ 4.49
NKX2-1-204ENST00000522719 RAD54L2Q9Y4B4 1467 aa43.11■■■■■ 4.49
NKX2-1-204ENST00000522719 ABCA10Q8WWZ4 1543 aa43.04■■■■■ 4.48
NKX2-1-204ENST00000522719 WDR97A6NE52 1622 aa43.03■■■■■ 4.48
NKX2-1-204ENST00000522719 ZNF608Q9ULD9 1512 aaPredicted RBP42.81■■■■■ 4.44
NKX2-1-204ENST00000522719 KIF27Q86VH2 1401 aa42.81■■■■■ 4.44
NKX2-1-204ENST00000522719 TDRD9Q8NDG6 1382 aaKnown RBP42.79■■■■■ 4.44
NKX2-1-204ENST00000522719 ABCA5Q8WWZ7 1642 aa42.78■■■■■ 4.44
NKX2-1-204ENST00000522719 EIF4G3O43432 1585 aaKnown RBP42.73■■■■■ 4.43
NKX2-1-204ENST00000522719 GAPVD1Q14C86 1478 aa42.72■■■■■ 4.43
NKX2-1-204ENST00000522719 AQRO60306 1485 aaKnown RBP eCLIP42.71■■■■■ 4.43
NKX2-1-204ENST00000522719 EEA1Q15075 1411 aa42.69■■■■■ 4.42
NKX2-1-204ENST00000522719 RUSC2Q8N2Y8 1516 aa42.66■■■■■ 4.42
NKX2-1-204ENST00000522719 PBRM1Q86U86 1689 aa42.61■■■■■ 4.41
NKX2-1-204ENST00000522719 GRIN2BQ13224 1484 aa42.57■■■■■ 4.41
NKX2-1-204ENST00000522719 ERICH3Q5RHP9 1530 aa42.56■■■■■ 4.4
NKX2-1-204ENST00000522719 IGF1RP08069 1367 aa42.49■■■■■ 4.39
NKX2-1-204ENST00000522719 FAM9AQ8IZU1 332 aaPredicted RBP42.45■■■■■ 4.39
NKX2-1-204ENST00000522719 CSRNP3Q8WYN3 585 aa42.44■■■■■ 4.38
NKX2-1-204ENST00000522719 CUL7Q14999 1698 aa42.39■■■■■ 4.38
NKX2-1-204ENST00000522719 MAGI1Q96QZ7 1491 aaPredicted RBP42.38■■■■■ 4.37
NKX2-1-204ENST00000522719 SNAPC4Q5SXM2 1469 aa42.34■■■■■ 4.37
NKX2-1-204ENST00000522719 ADAMTS12P58397 1594 aa42.29■■■■■ 4.36
NKX2-1-204ENST00000522719 CARMIL1Q5VZK9 1371 aa42.26■■■■■ 4.36
NKX2-1-204ENST00000522719 FHAD1B1AJZ9 1412 aa42.25■■■■■ 4.35
NKX2-1-204ENST00000522719 PRXQ9BXM0 1461 aa42.23■■■■■ 4.35
NKX2-1-204ENST00000522719 DNAJC5Q9H3Z4 198 aa42.21■■■■■ 4.35
NKX2-1-204ENST00000522719 SYNJ2O15056 1496 aa42.18■■■■■ 4.34
NKX2-1-204ENST00000522719 KIF21BO75037 1637 aa42.16■■■■■ 4.34
NKX2-1-204ENST00000522719 RAPGEF2Q9Y4G8 1499 aa42.14■■■■■ 4.34
NKX2-1-204ENST00000522719 CHMP7Q8WUX9 453 aaPredicted RBP42.06■■■■■ 4.32
NKX2-1-204ENST00000522719 CHD1O14646 1710 aa42.04■■■■■ 4.32
NKX2-1-204ENST00000522719 GRIN2AQ12879 1464 aa42.02■■■■■ 4.32
NKX2-1-204ENST00000522719 FBLN2P98095 1184 aa41.99■■■■■ 4.31
NKX2-1-204ENST00000522719 GOLGA3Q08378 1498 aa41.97■■■■■ 4.31
NKX2-1-204ENST00000522719 NUP160Q12769 1436 aa41.8■■■■■ 4.28
NKX2-1-204ENST00000522719 EHMT2Q96KQ7 1210 aa41.78■■■■■ 4.28
NKX2-1-204ENST00000522719 CEP170Q5SW79 1584 aa41.76■■■■■ 4.28
NKX2-1-204ENST00000522719 CTTNBP2Q8WZ74 1663 aa41.75■■■■■ 4.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms