RNA–Protein interactions for RNA: ENST00000372459.6

CTSA-203, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,972 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-203ENST00000372459 NISCHQ9Y2I1 1504 aa55.44■■■■■ 6.47
CTSA-203ENST00000372459 CCDC180Q9P1Z9 1646 aa48.09■■■■■ 5.29
CTSA-203ENST00000372459 ZCCHC6Q5VYS8 1495 aaKnown RBP46.67■■■■■ 5.06
CTSA-203ENST00000372459 DCAF1Q9Y4B6 1507 aa45.82■■■■■ 4.93
CTSA-203ENST00000372459 DCAF8L2P0C7V8 631 aa45.73■■■■■ 4.91
CTSA-203ENST00000372459 SHROOM4Q9ULL8 1493 aa45.64■■■■■ 4.9
CTSA-203ENST00000372459 ABCC9O60706 1549 aa45.12■■■■■ 4.81
CTSA-203ENST00000372459 MYO15BQ96JP2 1530 aa45.09■■■■■ 4.81
CTSA-203ENST00000372459 NACADO15069 1562 aa44.7■■■■■ 4.75
CTSA-203ENST00000372459 SCRIBQ14160 1630 aa44.35■■■■■ 4.69
CTSA-203ENST00000372459 RB1CC1Q8TDY2 1594 aa44.22■■■■■ 4.67
CTSA-203ENST00000372459 SUPT5HO00267 1087 aaKnown RBP44.16■■■■■ 4.66
CTSA-203ENST00000372459 UNC13AQ9UPW8 1703 aa43.34■■■■■ 4.53
CTSA-203ENST00000372459 RSF1Q96T23 1441 aaPredicted RBP43.21■■■■■ 4.51
CTSA-203ENST00000372459 CECR2Q9BXF3 1484 aa43.06■■■■■ 4.48
CTSA-203ENST00000372459 MROH2BQ7Z745 1585 aa42.86■■■■■ 4.45
CTSA-203ENST00000372459 BICRAQ9NZM4 1560 aa42.86■■■■■ 4.45
CTSA-203ENST00000372459 BAZ1AQ9NRL2 1556 aaPredicted RBP42.78■■■■■ 4.44
CTSA-203ENST00000372459 PABPN1Q86U42 306 aaKnown RBP eCLIP42.67■■■■■ 4.421e-6■■□□□ 12.3
CTSA-203ENST00000372459 WIZO95785 1651 aa42.55■■■■■ 4.4
CTSA-203ENST00000372459 SMARCA4P51532 1647 aa42.52■■■■■ 4.4
CTSA-203ENST00000372459 CHIC1Q5VXU3 224 aa42.49■■■■■ 4.39
CTSA-203ENST00000372459 TOP2AP11388 1531 aaKnown RBP42.11■■■■■ 4.33
CTSA-203ENST00000372459 PEG3Q9GZU2 1588 aa41.96■■■■■ 4.31
CTSA-203ENST00000372459 SMARCA2P51531 1590 aa41.73■■■■■ 4.27
CTSA-203ENST00000372459 ATAD2BQ9ULI0 1458 aa41.71■■■■■ 4.27
CTSA-203ENST00000372459 CCDC88BA6NC98 1476 aa41.7■■■■■ 4.27
CTSA-203ENST00000372459 EIF4G1Q04637 1599 aaKnown RBP41.55■■■■■ 4.24
CTSA-203ENST00000372459 BAZ1BQ9UIG0 1483 aaKnown RBP41.52■■■■■ 4.24
CTSA-203ENST00000372459 TRIM41Q8WV44 630 aa41.48■■■■■ 4.23
CTSA-203ENST00000372459 NCAPD3P42695 1498 aa41.26■■■■■ 4.19
CTSA-203ENST00000372459 HMGXB3Q12766 1538 aa41.24■■■■■ 4.19
CTSA-203ENST00000372459 ABCC8Q09428 1581 aa40.99■■■■■ 4.15
CTSA-203ENST00000372459 LOC105371045A0A1W2PR82 267 aa40.9■■■■■ 4.14
CTSA-203ENST00000372459 CC2D2AQ9P2K1 1620 aa40.82■■■■■ 4.13
CTSA-203ENST00000372459 FAM9AQ8IZU1 332 aaPredicted RBP40.75■■■■■ 4.11
CTSA-203ENST00000372459 WRNQ14191 1432 aaPredicted RBP eCLIP40.67■■■■■ 4.1
CTSA-203ENST00000372459 CFTRP13569 1480 aa40.49■■■■■ 4.07
CTSA-203ENST00000372459 SYNJ1O43426 1573 aa40.47■■■■■ 4.07
CTSA-203ENST00000372459 EEA1Q15075 1411 aa40.33■■■■■ 4.05
CTSA-203ENST00000372459 SOGA1O94964 1423 aa40.32■■■■■ 4.05
CTSA-203ENST00000372459 PRDM2Q13029 1718 aa40.29■■■■■ 4.04
CTSA-203ENST00000372459 TOP2BQ02880 1626 aa40.26■■■■■ 4.04
CTSA-203ENST00000372459 CADPSQ9ULU8 1353 aa40.26■■■■■ 4.04
CTSA-203ENST00000372459 BIVM-ERCC5R4GMW8 1640 aa40.2■■■■■ 4.03
CTSA-203ENST00000372459 EHMT2Q96KQ7 1210 aa40.18■■■■■ 4.02
CTSA-203ENST00000372459 RUSC2Q8N2Y8 1516 aa40.14■■■■■ 4.02
CTSA-203ENST00000372459 CSRNP3Q8WYN3 585 aa40.09■■■■■ 4.01
CTSA-203ENST00000372459 CUX1P39880 1505 aa40.04■■■■■ 4
CTSA-203ENST00000372459 FANCD2Q9BXW9 1451 aa39.82■■■■□ 3.97
CTSA-203ENST00000372459 GOLGA3Q08378 1498 aa39.81■■■■□ 3.96
CTSA-203ENST00000372459 LAMC3Q9Y6N6 1575 aa39.78■■■■□ 3.96
CTSA-203ENST00000372459 TNIKQ9UKE5 1360 aa39.78■■■■□ 3.96
CTSA-203ENST00000372459 KIF21BO75037 1637 aa39.77■■■■□ 3.96
CTSA-203ENST00000372459 CEP164Q9UPV0 1460 aa39.77■■■■□ 3.96
CTSA-203ENST00000372459 NESP48681 1621 aa39.75■■■■□ 3.95
CTSA-203ENST00000372459 UBTFP17480 764 aaKnown RBP39.66■■■■□ 3.94
CTSA-203ENST00000372459 DNAJC5BQ9UF47 199 aa39.66■■■■□ 3.94
CTSA-203ENST00000372459 CEP162Q5TB80 1403 aa39.61■■■■□ 3.93
CTSA-203ENST00000372459 KIF27Q86VH2 1401 aa39.6■■■■□ 3.93
CTSA-203ENST00000372459 PCGF6Q9BYE7 350 aa39.55■■■■□ 3.92
CTSA-203ENST00000372459 FGD5Q6ZNL6 1462 aa39.54■■■■□ 3.92
CTSA-203ENST00000372459 DNMBPQ6XZF7 1577 aa39.54■■■■□ 3.92
CTSA-203ENST00000372459 PDS5BQ9NTI5 1447 aa39.49■■■■□ 3.91
CTSA-203ENST00000372459 RAPGEF2Q9Y4G8 1499 aa39.48■■■■□ 3.91
CTSA-203ENST00000372459 TOPBP1Q92547 1522 aa39.44■■■■□ 3.9
CTSA-203ENST00000372459 PRXQ9BXM0 1461 aa39.44■■■■□ 3.9
CTSA-203ENST00000372459 TRIM26Q12899 539 aaPredicted RBP39.42■■■■□ 3.9
CTSA-203ENST00000372459 ERICH3Q5RHP9 1530 aa39.42■■■■□ 3.9
CTSA-203ENST00000372459 CUX2O14529 1486 aa39.4■■■■□ 3.9
CTSA-203ENST00000372459 POLA1P09884 1462 aaPredicted RBP39.29■■■■□ 3.88
CTSA-203ENST00000372459 URB2Q14146 1524 aaKnown RBP39.28■■■■□ 3.88
CTSA-203ENST00000372459 KIF21AQ7Z4S6 1674 aa39.26■■■■□ 3.88
CTSA-203ENST00000372459 ABCA10Q8WWZ4 1543 aa39.2■■■■□ 3.87
CTSA-203ENST00000372459 IGF1RP08069 1367 aa39.19■■■■□ 3.86
CTSA-203ENST00000372459 CLIP1P30622 1438 aa39.19■■■■□ 3.86
CTSA-203ENST00000372459 RAD54L2Q9Y4B4 1467 aa39.17■■■■□ 3.86
CTSA-203ENST00000372459 CARMIL1Q5VZK9 1371 aa39.02■■■■□ 3.84
CTSA-203ENST00000372459 WDR97A6NE52 1622 aa39■■■■□ 3.83
CTSA-203ENST00000372459 PPARGC1BQ86YN6 1023 aaKnown RBP38.97■■■■□ 3.83
CTSA-203ENST00000372459 MRC2Q9UBG0 1479 aa38.93■■■■□ 3.82
CTSA-203ENST00000372459 VPS8Q8N3P4 1428 aa38.91■■■■□ 3.82
CTSA-203ENST00000372459 RANGAP1P46060 587 aaPredicted RBP38.89■■■■□ 3.82
CTSA-203ENST00000372459 HRCP23327 699 aa38.86■■■■□ 3.81
CTSA-203ENST00000372459 CUL7Q14999 1698 aa38.84■■■■□ 3.81
CTSA-203ENST00000372459 ABCA5Q8WWZ7 1642 aa38.83■■■■□ 3.81
CTSA-203ENST00000372459 TARBP1Q13395 1621 aaKnown RBP38.78■■■■□ 3.8
CTSA-203ENST00000372459 TDRD9Q8NDG6 1382 aaKnown RBP38.76■■■■□ 3.8
CTSA-203ENST00000372459 GAPVD1Q14C86 1478 aa38.75■■■■□ 3.79
CTSA-203ENST00000372459 ARAP1Q96P48 1450 aa38.73■■■■□ 3.79
CTSA-203ENST00000372459 WDR62O43379 1518 aa38.7■■■■□ 3.79
CTSA-203ENST00000372459 ERCC6Q03468 1493 aa38.65■■■■□ 3.78
CTSA-203ENST00000372459 ARHGAP35Q9NRY4 1499 aa38.64■■■■□ 3.78
CTSA-203ENST00000372459 APLP2Q06481 763 aa38.6■■■■□ 3.77
CTSA-203ENST00000372459 TTBK1Q5TCY1 1321 aaPredicted RBP38.58■■■■□ 3.77
CTSA-203ENST00000372459 IFT140Q96RY7 1462 aa38.54■■■■□ 3.76
CTSA-203ENST00000372459 PBRM1Q86U86 1689 aa38.48■■■■□ 3.75
CTSA-203ENST00000372459 CTTNBP2Q8WZ74 1663 aa38.48■■■■□ 3.75
CTSA-203ENST00000372459 THOC2Q8NI27 1593 aaKnown RBP38.47■■■■□ 3.75
CTSA-203ENST00000372459 AQRO60306 1485 aaKnown RBP eCLIP38.43■■■■□ 3.746e-8■■■■□ 26.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms