RNA–Protein interactions for RNA: ENST00000257818.2

LMO2-201, Transcript of LIM domain only 2, humanhuman

TSL 1 (best) BASIC

Gene LMO2, Length 2,294 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO2-201ENST00000257818 NISCHQ9Y2I1 1504 aa52.15■■■■■ 5.94
LMO2-201ENST00000257818 CCDC180Q9P1Z9 1646 aa44.97■■■■■ 4.79
LMO2-201ENST00000257818 ZCCHC6Q5VYS8 1495 aaKnown RBP43.91■■■■■ 4.62
LMO2-201ENST00000257818 SHROOM4Q9ULL8 1493 aa43.43■■■■■ 4.54
LMO2-201ENST00000257818 DCAF8L2P0C7V8 631 aa43.28■■■■■ 4.52
LMO2-201ENST00000257818 DCAF1Q9Y4B6 1507 aa42.91■■■■■ 4.46
LMO2-201ENST00000257818 ABCC9O60706 1549 aa42.33■■■■■ 4.37
LMO2-201ENST00000257818 SUPT5HO00267 1087 aaKnown RBP42.22■■■■■ 4.35
LMO2-201ENST00000257818 MYO15BQ96JP2 1530 aa42.09■■■■■ 4.33
LMO2-201ENST00000257818 NACADO15069 1562 aa41.78■■■■■ 4.28
LMO2-201ENST00000257818 SCRIBQ14160 1630 aa41.77■■■■■ 4.28
LMO2-201ENST00000257818 CHIC1Q5VXU3 224 aa41.36■■■■■ 4.21
LMO2-201ENST00000257818 RB1CC1Q8TDY2 1594 aa41.31■■■■■ 4.2
LMO2-201ENST00000257818 HRCP23327 699 aa41.01■■■■■ 4.16
LMO2-201ENST00000257818 RSF1Q96T23 1441 aaPredicted RBP40.79■■■■■ 4.12
LMO2-201ENST00000257818 UNC13AQ9UPW8 1703 aa40.65■■■■■ 4.1
LMO2-201ENST00000257818 CECR2Q9BXF3 1484 aa40.65■■■■■ 4.1
LMO2-201ENST00000257818 PCGF6Q9BYE7 350 aa40.6■■■■■ 4.09
LMO2-201ENST00000257818 MROH2BQ7Z745 1585 aa40.43■■■■■ 4.06
LMO2-201ENST00000257818 PABPN1Q86U42 306 aaKnown RBP eCLIP40.18■■■■■ 4.02
LMO2-201ENST00000257818 LOC105371045A0A1W2PR82 267 aa40.17■■■■■ 4.02
LMO2-201ENST00000257818 BICRAQ9NZM4 1560 aa40.17■■■■■ 4.02
LMO2-201ENST00000257818 WIZO95785 1651 aa40.17■■■■■ 4.02
LMO2-201ENST00000257818 BAZ1AQ9NRL2 1556 aaPredicted RBP40.16■■■■■ 4.02
LMO2-201ENST00000257818 PPARGC1BQ86YN6 1023 aaKnown RBP40.11■■■■■ 4.01
LMO2-201ENST00000257818 SMARCA4P51532 1647 aa39.95■■■■□ 3.99
LMO2-201ENST00000257818 TRIM26Q12899 539 aaPredicted RBP39.69■■■■□ 3.94
LMO2-201ENST00000257818 TOP2AP11388 1531 aaKnown RBP39.59■■■■□ 3.93
LMO2-201ENST00000257818 TRIM41Q8WV44 630 aa39.38■■■■□ 3.89
LMO2-201ENST00000257818 CCDC88BA6NC98 1476 aa39.33■■■■□ 3.89
LMO2-201ENST00000257818 SMARCA2P51531 1590 aa39.31■■■■□ 3.88
LMO2-201ENST00000257818 PEG3Q9GZU2 1588 aa39.3■■■■□ 3.88
LMO2-201ENST00000257818 EIF4G1Q04637 1599 aaKnown RBP39.2■■■■□ 3.87
LMO2-201ENST00000257818 ATAD2BQ9ULI0 1458 aa39.15■■■■□ 3.86
LMO2-201ENST00000257818 ZEB1P37275 1124 aaPredicted RBP39.01■■■■□ 3.83
LMO2-201ENST00000257818 FAM9AQ8IZU1 332 aaPredicted RBP39■■■■□ 3.83
LMO2-201ENST00000257818 BAZ1BQ9UIG0 1483 aaKnown RBP38.98■■■■□ 3.83
LMO2-201ENST00000257818 ABCC8Q09428 1581 aa38.83■■■■□ 3.81
LMO2-201ENST00000257818 EHMT2Q96KQ7 1210 aa38.66■■■■□ 3.78
LMO2-201ENST00000257818 NCAPD3P42695 1498 aa38.62■■■■□ 3.77
LMO2-201ENST00000257818 HMGXB3Q12766 1538 aa38.56■■■■□ 3.76
LMO2-201ENST00000257818 WRNQ14191 1432 aaPredicted RBP eCLIP38.36■■■■□ 3.731e-7■■■□□ 15.3
LMO2-201ENST00000257818 SOGA1O94964 1423 aa38.24■■■■□ 3.71
LMO2-201ENST00000257818 SYNJ1O43426 1573 aa38.21■■■■□ 3.71
LMO2-201ENST00000257818 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.71
LMO2-201ENST00000257818 SCAF1Q9H7N4 1312 aaKnown RBP38.15■■■■□ 3.7
LMO2-201ENST00000257818 RUSC2Q8N2Y8 1516 aa38.1■■■■□ 3.69
LMO2-201ENST00000257818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.02■■■■□ 3.68
LMO2-201ENST00000257818 CFTRP13569 1480 aa37.99■■■■□ 3.67
LMO2-201ENST00000257818 EEA1Q15075 1411 aa37.98■■■■□ 3.67
LMO2-201ENST00000257818 CSRNP3Q8WYN3 585 aa37.95■■■■□ 3.67
LMO2-201ENST00000257818 CCER1Q8TC90 406 aaPredicted RBP37.9■■■■□ 3.66
LMO2-201ENST00000257818 TOP2BQ02880 1626 aa37.9■■■■□ 3.66
LMO2-201ENST00000257818 PELP1Q8IZL8 1130 aaKnown RBP37.87■■■■□ 3.65
LMO2-201ENST00000257818 BIVM-ERCC5R4GMW8 1640 aa37.81■■■■□ 3.64
LMO2-201ENST00000257818 CADPSQ9ULU8 1353 aa37.76■■■■□ 3.64
LMO2-201ENST00000257818 PRDM2Q13029 1718 aa37.74■■■■□ 3.63
LMO2-201ENST00000257818 CUX1P39880 1505 aa37.73■■■■□ 3.63
LMO2-201ENST00000257818 CEP162Q5TB80 1403 aa37.72■■■■□ 3.63
LMO2-201ENST00000257818 UBTFP17480 764 aaKnown RBP37.64■■■■□ 3.62
LMO2-201ENST00000257818 TNIKQ9UKE5 1360 aa37.64■■■■□ 3.62
LMO2-201ENST00000257818 GOLGA3Q08378 1498 aa37.63■■■■□ 3.61
LMO2-201ENST00000257818 TTBK1Q5TCY1 1321 aaPredicted RBP37.57■■■■□ 3.6
LMO2-201ENST00000257818 ACIN1Q9UKV3 1341 aaKnown RBP37.57■■■■□ 3.6
LMO2-201ENST00000257818 CEP164Q9UPV0 1460 aa37.54■■■■□ 3.6
LMO2-201ENST00000257818 KIF21BO75037 1637 aa37.52■■■■□ 3.6
LMO2-201ENST00000257818 NEUROD1Q13562 356 aa37.49■■■■□ 3.59
LMO2-201ENST00000257818 DIEXFQ68CQ4 756 aaKnown RBP37.49■■■■□ 3.59
LMO2-201ENST00000257818 NESP48681 1621 aa37.39■■■■□ 3.58
LMO2-201ENST00000257818 RAPGEF2Q9Y4G8 1499 aa37.38■■■■□ 3.57
LMO2-201ENST00000257818 FANCD2Q9BXW9 1451 aa37.38■■■■□ 3.57
LMO2-201ENST00000257818 DNAJC5BQ9UF47 199 aa37.36■■■■□ 3.57
LMO2-201ENST00000257818 KIF27Q86VH2 1401 aa37.29■■■■□ 3.56
LMO2-201ENST00000257818 FGD5Q6ZNL6 1462 aa37.21■■■■□ 3.55
LMO2-201ENST00000257818 PRXQ9BXM0 1461 aa37.2■■■■□ 3.55
LMO2-201ENST00000257818 CENPBP07199 599 aaPredicted RBP37.19■■■■□ 3.54
LMO2-201ENST00000257818 LAMC3Q9Y6N6 1575 aa37.17■■■■□ 3.54
LMO2-201ENST00000257818 GTF3C3Q9Y5Q9 886 aa37.14■■■■□ 3.54
LMO2-201ENST00000257818 CUX2O14529 1486 aa37.13■■■■□ 3.53
LMO2-201ENST00000257818 ERICH3Q5RHP9 1530 aa37.12■■■■□ 3.53
LMO2-201ENST00000257818 CLIP1P30622 1438 aa37.12■■■■□ 3.53
LMO2-201ENST00000257818 ZNF316A6NFI3 1004 aaPredicted RBP37.08■■■■□ 3.53
LMO2-201ENST00000257818 DNMBPQ6XZF7 1577 aa37.08■■■■□ 3.53
LMO2-201ENST00000257818 RANGAP1P46060 587 aaPredicted RBP37.07■■■■□ 3.52
LMO2-201ENST00000257818 TOPBP1Q92547 1522 aa37.03■■■■□ 3.52
LMO2-201ENST00000257818 IGF1RP08069 1367 aa36.96■■■■□ 3.51
LMO2-201ENST00000257818 POLA1P09884 1462 aaPredicted RBP36.93■■■■□ 3.5
LMO2-201ENST00000257818 RAD54L2Q9Y4B4 1467 aa36.93■■■■□ 3.5
LMO2-201ENST00000257818 PDS5BQ9NTI5 1447 aa36.92■■■■□ 3.5
LMO2-201ENST00000257818 URB2Q14146 1524 aaKnown RBP36.89■■■■□ 3.5
LMO2-201ENST00000257818 HNRNPUL2Q1KMD3 747 aaKnown RBP36.84■■■■□ 3.49
LMO2-201ENST00000257818 KIF21AQ7Z4S6 1674 aa36.84■■■■□ 3.49
LMO2-201ENST00000257818 VPS8Q8N3P4 1428 aa36.84■■■■□ 3.49
LMO2-201ENST00000257818 ABCA10Q8WWZ4 1543 aa36.8■■■■□ 3.48
LMO2-201ENST00000257818 CARMIL1Q5VZK9 1371 aa36.78■■■■□ 3.48
LMO2-201ENST00000257818 ARAP1Q96P48 1450 aa36.67■■■■□ 3.46
LMO2-201ENST00000257818 MIER1Q8N108 512 aa36.65■■■■□ 3.46
LMO2-201ENST00000257818 YTHDC1Q96MU7 727 aaKnown RBP36.63■■■■□ 3.45
LMO2-201ENST00000257818 WDR97A6NE52 1622 aa36.6■■■■□ 3.45
LMO2-201ENST00000257818 APLP2Q06481 763 aa36.58■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms