Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.773e-6■■□□□ 11.5
SMNDC1O75940 EHBP1-201ENST00000263991 5165 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.783e-6■■□□□ 11.5
SMNDC1O75940 EHBP1-220ENST00000496857 1262 ntTSL 1 (best)9.84□□□□□ -0.833e-6■■□□□ 11.5
SMNDC1O75940 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC8.06□□□□□ -1.123e-6■■□□□ 11.5
SMNDC1O75940 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.543e-6■■□□□ 11.5
SMNDC1O75940 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.524e-17■■□□□ 11.5
SMNDC1O75940 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.524e-17■■□□□ 11.5
SMNDC1O75940 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)17.15■□□□□ 0.344e-17■■□□□ 11.5
SMNDC1O75940 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.064e-17■■□□□ 11.5
SMNDC1O75940 DDX17-201ENST00000216019 6441 ntTSL 1 (best)13.23□□□□□ -0.294e-17■■□□□ 11.5
SMNDC1O75940 GSE1-205ENST00000412692 6625 ntTSL 515.92■□□□□ 0.143e-7■■□□□ 11.5
SMNDC1O75940 C20orf27-203ENST00000399672 1734 ntAPPRIS P1 TSL 224.42■■□□□ 1.52e-6■■□□□ 11.4
SMNDC1O75940 SNX5-206ENST00000469704 696 ntTSL 323.89■■□□□ 1.412e-6■■□□□ 11.4
SMNDC1O75940 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22■■□□□ 1.112e-6■■□□□ 11.4
SMNDC1O75940 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.098e-12■■□□□ 11.4
SMNDC1O75940 UBE2D3-216ENST00000503742 1977 ntTSL 1 (best)20.55■□□□□ 0.883e-7■■□□□ 11.4
SMNDC1O75940 SNX5-217ENST00000606557 1087 ntBASIC20.51■□□□□ 0.872e-6■■□□□ 11.4
SMNDC1O75940 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.822e-6■■□□□ 11.4
SMNDC1O75940 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.782e-6■■□□□ 11.4
SMNDC1O75940 SEMA3B-205ENST00000434030 1011 ntTSL 319.88■□□□□ 0.777e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-214ENST00000503282 584 ntTSL 219.67■□□□□ 0.743e-7■■□□□ 11.4
SMNDC1O75940 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.43■□□□□ 0.78e-12■■□□□ 11.4
SMNDC1O75940 VARS2-209ENST00000477288 6054 ntTSL 219.16■□□□□ 0.663e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.653e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-229ENST00000510129 582 ntTSL 319.13■□□□□ 0.653e-7■■□□□ 11.4
SMNDC1O75940 CHRD-215ENST00000485883 568 ntTSL 418.37■□□□□ 0.532e-6■■□□□ 11.4
SMNDC1O75940 CHRD-207ENST00000459711 503 ntTSL 218.04■□□□□ 0.482e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-220ENST00000505307 743 ntTSL 518■□□□□ 0.473e-7■■□□□ 11.4
SMNDC1O75940 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.422e-6■■□□□ 11.4
SMNDC1O75940 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.63■□□□□ 0.412e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-215ENST00000503418 662 ntTSL 417.54■□□□□ 0.43e-7■■□□□ 11.4
SMNDC1O75940 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.52■□□□□ 0.42e-6■■□□□ 11.4
SMNDC1O75940 CHRD-216ENST00000486066 546 ntTSL 417.38■□□□□ 0.372e-6■■□□□ 11.4
SMNDC1O75940 SEMA3B-206ENST00000439487 594 ntTSL 317.37■□□□□ 0.377e-6■■□□□ 11.4
SMNDC1O75940 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.322e-6■■□□□ 11.4
SMNDC1O75940 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.322e-6■■□□□ 11.4
SMNDC1O75940 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.292e-6■■□□□ 11.4
SMNDC1O75940 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.63■□□□□ 0.252e-6■■□□□ 11.4
SMNDC1O75940 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.233e-7■■□□□ 11.4
SMNDC1O75940 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.222e-6■■□□□ 11.4
SMNDC1O75940 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.83■□□□□ 0.123e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.073e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-213ENST00000502690 599 ntTSL 415.36■□□□□ 0.053e-7■■□□□ 11.4
SMNDC1O75940 SH3BP2-223ENST00000512131 615 ntTSL 215.36■□□□□ 0.052e-6■■□□□ 11.4
SMNDC1O75940 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.32■□□□□ 0.043e-7■■□□□ 11.4
SMNDC1O75940 VARS2-204ENST00000467717 863 ntTSL 315.12■□□□□ 0.013e-7■■□□□ 11.4
SMNDC1O75940 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.032e-6■■□□□ 11.4
SMNDC1O75940 CHRD-214ENST00000482805 608 ntTSL 414.86□□□□□ -0.032e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.063e-7■■□□□ 11.4
SMNDC1O75940 C20orf27-204ENST00000399683 933 ntTSL 214.55□□□□□ -0.082e-6■■□□□ 11.4
SMNDC1O75940 SH3BP2-206ENST00000503219 551 ntTSL 414.51□□□□□ -0.092e-6■■□□□ 11.4
SMNDC1O75940 SH3BP2-215ENST00000510074 649 ntTSL 514.44□□□□□ -0.12e-6■■□□□ 11.4
SMNDC1O75940 SH3BP2-219ENST00000511237 517 ntTSL 514.44□□□□□ -0.12e-6■■□□□ 11.4
SMNDC1O75940 SNX5-204ENST00000431277 840 ntTSL 514.38□□□□□ -0.112e-6■■□□□ 11.4
SMNDC1O75940 CHRD-210ENST00000461684 677 ntTSL 414.37□□□□□ -0.112e-6■■□□□ 11.4
SMNDC1O75940 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.112e-6■■□□□ 11.4
SMNDC1O75940 VARS2-203ENST00000428017 1103 ntTSL 213.49□□□□□ -0.253e-7■■□□□ 11.4
SMNDC1O75940 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.252e-6■■□□□ 11.4
SMNDC1O75940 SNX5-203ENST00000419004 778 ntTSL 513.45□□□□□ -0.262e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-228ENST00000508974 568 ntTSL 413.36□□□□□ -0.273e-7■■□□□ 11.4
SMNDC1O75940 SH3BP2-213ENST00000508385 876 ntTSL 313.18□□□□□ -0.32e-6■■□□□ 11.4
SMNDC1O75940 SH3BP2-208ENST00000504294 557 ntTSL 512.98□□□□□ -0.332e-6■■□□□ 11.4
SMNDC1O75940 OVOL2-204ENST00000486776 550 ntTSL 312.73□□□□□ -0.372e-6■■□□□ 11.4
SMNDC1O75940 FLNA-210ENST00000462590 1026 ntTSL 1 (best)12.66□□□□□ -0.386e-17■■□□□ 11.4
SMNDC1O75940 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC12.2□□□□□ -0.468e-12■■□□□ 11.4
SMNDC1O75940 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.493e-7■■□□□ 11.4
SMNDC1O75940 VARS2-213ENST00000625423 3362 ntTSL 2 BASIC11.68□□□□□ -0.543e-7■■□□□ 11.4
SMNDC1O75940 POLR2H-207ENST00000455712 823 ntTSL 311.31□□□□□ -0.68e-12■■□□□ 11.4
SMNDC1O75940 UBE2D3-231ENST00000513098 702 ntTSL 311.27□□□□□ -0.613e-7■■□□□ 11.4
SMNDC1O75940 AP1G2-216ENST00000554982 716 ntTSL 411.24□□□□□ -0.615e-10■■□□□ 11.4
SMNDC1O75940 ITIH2-202ENST00000379587 2848 ntTSL 5 BASIC11.13□□□□□ -0.632e-6■■□□□ 11.4
SMNDC1O75940 AP1G2-217ENST00000555118 362 ntTSL 511.02□□□□□ -0.655e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC10.72□□□□□ -0.693e-7■■□□□ 11.4
SMNDC1O75940 SH3BP2-224ENST00000513020 868 ntTSL 310.71□□□□□ -0.692e-6■■□□□ 11.4
SMNDC1O75940 AP1G2-229ENST00000557132 474 ntTSL 310.66□□□□□ -0.75e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.723e-7■■□□□ 11.4
SMNDC1O75940 AP1G2-224ENST00000556741 353 ntTSL 210.43□□□□□ -0.745e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-232ENST00000514755 593 ntTSL 410.34□□□□□ -0.753e-7■■□□□ 11.4
SMNDC1O75940 POLR2H-205ENST00000443489 807 ntTSL 2 BASIC10.29□□□□□ -0.768e-12■■□□□ 11.4
SMNDC1O75940 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC10.23□□□□□ -0.773e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC10.15□□□□□ -0.783e-7■■□□□ 11.4
SMNDC1O75940 ITIH2-201ENST00000358415 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.792e-6■■□□□ 11.4
SMNDC1O75940 POLR2H-202ENST00000429568 878 ntTSL 2 BASIC10.03□□□□□ -0.88e-12■■□□□ 11.4
SMNDC1O75940 POLR2H-211ENST00000488213 1035 ntTSL 29.78□□□□□ -0.848e-12■■□□□ 11.4
SMNDC1O75940 VARS2-210ENST00000490699 719 ntTSL 39.73□□□□□ -0.852e-6■■□□□ 11.4
SMNDC1O75940 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC9.65□□□□□ -0.862e-6■■□□□ 11.4
SMNDC1O75940 UBE2D3-212ENST00000502563 680 ntTSL 39.5□□□□□ -0.893e-7■■□□□ 11.4
SMNDC1O75940 POLR2H-212ENST00000489043 433 ntTSL 29.43□□□□□ -0.98e-12■■□□□ 11.4
SMNDC1O75940 AP1G2-212ENST00000554554 2955 ntTSL 29.31□□□□□ -0.925e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-206ENST00000357194 660 ntTSL 2 BASIC9.26□□□□□ -0.933e-7■■□□□ 11.4
SMNDC1O75940 UBE2D3-227ENST00000508818 584 ntTSL 29.13□□□□□ -0.953e-7■■□□□ 11.4
SMNDC1O75940 POLR2H-206ENST00000452961 791 ntTSL 2 BASIC8.53□□□□□ -1.048e-12■■□□□ 11.4
SMNDC1O75940 AP1G2-219ENST00000555789 318 ntTSL 38.3□□□□□ -1.085e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-223ENST00000508249 604 ntTSL 48.14□□□□□ -1.113e-7■■□□□ 11.4
SMNDC1O75940 ITIH2-206ENST00000480387 573 ntTSL 38.05□□□□□ -1.122e-6■■□□□ 11.4
SMNDC1O75940 AP1G2-221ENST00000555974 349 ntTSL 37.9□□□□□ -1.145e-10■■□□□ 11.4
SMNDC1O75940 UBE2D3-222ENST00000508238 547 ntTSL 47.72□□□□□ -1.173e-7■■□□□ 11.4
SMNDC1O75940 ITIH2-203ENST00000429820 767 ntTSL 37.55□□□□□ -1.22e-6■■□□□ 11.4
SMNDC1O75940 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.292e-6■■□□□ 11.4
SMNDC1O75940 SNX5-207ENST00000474883 695 ntTSL 56.55□□□□□ -1.362e-6■■□□□ 11.4
Retrieved 100 of 11,362 protein–RNA pairs in 112.6 ms