RNA–Protein interactions for RNA: ENST00000343106.9

UBE2D3-203, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS P4 TSL 2 BASIC

Gene UBE2D3, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-203ENST00000343106 NISCHQ9Y2I1 1504 aa20.13■□□□□ 0.81
UBE2D3-203ENST00000343106 SHROOM4Q9ULL8 1493 aa17.55■□□□□ 0.4
UBE2D3-203ENST00000343106 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
UBE2D3-203ENST00000343106 DCAF8L2P0C7V8 631 aa17.14■□□□□ 0.33
UBE2D3-203ENST00000343106 ZCCHC6Q5VYS8 1495 aaKnown RBP17■□□□□ 0.31
UBE2D3-203ENST00000343106 CCDC180Q9P1Z9 1646 aa16.86■□□□□ 0.29
UBE2D3-203ENST00000343106 CHIC1Q5VXU3 224 aa16.67■□□□□ 0.26
UBE2D3-203ENST00000343106 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
UBE2D3-203ENST00000343106 DCAF1Q9Y4B6 1507 aa16.37■□□□□ 0.21
UBE2D3-203ENST00000343106 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.2
UBE2D3-203ENST00000343106 LOC105371045A0A1W2PR82 267 aa16.31■□□□□ 0.2
UBE2D3-203ENST00000343106 HRCP23327 699 aa16.23■□□□□ 0.19
UBE2D3-203ENST00000343106 SCRIBQ14160 1630 aa16.09■□□□□ 0.17
UBE2D3-203ENST00000343106 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
UBE2D3-203ENST00000343106 PPARGC1BQ86YN6 1023 aaKnown RBP16.04■□□□□ 0.16
UBE2D3-203ENST00000343106 ABCC9O60706 1549 aa16.01■□□□□ 0.15
UBE2D3-203ENST00000343106 FAM9AQ8IZU1 332 aaPredicted RBP16■□□□□ 0.15
UBE2D3-203ENST00000343106 TRIM41Q8WV44 630 aa16■□□□□ 0.15
UBE2D3-203ENST00000343106 EHMT2Q96KQ7 1210 aa15.98■□□□□ 0.15
UBE2D3-203ENST00000343106 TRIM26Q12899 539 aaPredicted RBP15.88■□□□□ 0.13
UBE2D3-203ENST00000343106 CECR2Q9BXF3 1484 aa15.83■□□□□ 0.12
UBE2D3-203ENST00000343106 RB1CC1Q8TDY2 1594 aa15.81■□□□□ 0.12
UBE2D3-203ENST00000343106 MROH2BQ7Z745 1585 aa15.72■□□□□ 0.11
UBE2D3-203ENST00000343106 NACADO15069 1562 aa15.71■□□□□ 0.11
UBE2D3-203ENST00000343106 WIZO95785 1651 aa15.59■□□□□ 0.09
UBE2D3-203ENST00000343106 ZEB1P37275 1124 aaPredicted RBP15.49■□□□□ 0.07
UBE2D3-203ENST00000343106 TTBK1Q5TCY1 1321 aaPredicted RBP15.45■□□□□ 0.06
UBE2D3-203ENST00000343106 PABPN1Q86U42 306 aaKnown RBP eCLIP15.44■□□□□ 0.06
UBE2D3-203ENST00000343106 BAZ1AQ9NRL2 1556 aaPredicted RBP15.42■□□□□ 0.06
UBE2D3-203ENST00000343106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.36■□□□□ 0.05
UBE2D3-203ENST00000343106 CCDC88BA6NC98 1476 aa15.36■□□□□ 0.05
UBE2D3-203ENST00000343106 ABCC8Q09428 1581 aa15.35■□□□□ 0.05
UBE2D3-203ENST00000343106 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
UBE2D3-203ENST00000343106 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
UBE2D3-203ENST00000343106 SOGA1O94964 1423 aa15.28■□□□□ 0.04
UBE2D3-203ENST00000343106 UBTFP17480 764 aaKnown RBP15.28■□□□□ 0.04
UBE2D3-203ENST00000343106 SMARCA4P51532 1647 aa15.27■□□□□ 0.03
UBE2D3-203ENST00000343106 EIF4G1Q04637 1599 aaKnown RBP15.26■□□□□ 0.03
UBE2D3-203ENST00000343106 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
UBE2D3-203ENST00000343106 SMARCA2P51531 1590 aa15.22■□□□□ 0.03
UBE2D3-203ENST00000343106 RUSC2Q8N2Y8 1516 aa15.19■□□□□ 0.02
UBE2D3-203ENST00000343106 CEP162Q5TB80 1403 aa15.18■□□□□ 0.02
UBE2D3-203ENST00000343106 TNIKQ9UKE5 1360 aa15.12■□□□□ 0.01
UBE2D3-203ENST00000343106 RANGAP1P46060 587 aaPredicted RBP15.11■□□□□ 0.01
UBE2D3-203ENST00000343106 UNC13AQ9UPW8 1703 aa15.11■□□□□ 0.01
UBE2D3-203ENST00000343106 WRNQ14191 1432 aaPredicted RBP eCLIP15.07■□□□□ 0
UBE2D3-203ENST00000343106 BICRAQ9NZM4 1560 aa15.06■□□□□ 0
UBE2D3-203ENST00000343106 SCAF1Q9H7N4 1312 aaKnown RBP15.03■□□□□ -0
UBE2D3-203ENST00000343106 EEA1Q15075 1411 aa15.03■□□□□ -0
UBE2D3-203ENST00000343106 HNRNPUL2Q1KMD3 747 aaKnown RBP15□□□□□ -0.01
UBE2D3-203ENST00000343106 GOLGA3Q08378 1498 aa15□□□□□ -0.01
UBE2D3-203ENST00000343106 DIEXFQ68CQ4 756 aaKnown RBP14.98□□□□□ -0.01
UBE2D3-203ENST00000343106 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
UBE2D3-203ENST00000343106 BAZ1BQ9UIG0 1483 aaKnown RBP14.94□□□□□ -0.02
UBE2D3-203ENST00000343106 SYNJ1O43426 1573 aa14.92□□□□□ -0.02
UBE2D3-203ENST00000343106 APLP2Q06481 763 aa14.91□□□□□ -0.02
UBE2D3-203ENST00000343106 CLIP1P30622 1438 aa14.9□□□□□ -0.02
UBE2D3-203ENST00000343106 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
UBE2D3-203ENST00000343106 PEG3Q9GZU2 1588 aa14.89□□□□□ -0.03
UBE2D3-203ENST00000343106 NEUROD1Q13562 356 aa14.88□□□□□ -0.03
UBE2D3-203ENST00000343106 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
UBE2D3-203ENST00000343106 ACIN1Q9UKV3 1341 aaKnown RBP14.85□□□□□ -0.03
UBE2D3-203ENST00000343106 ZNF316A6NFI3 1004 aaPredicted RBP14.82□□□□□ -0.04
UBE2D3-203ENST00000343106 VPS8Q8N3P4 1428 aa14.78□□□□□ -0.04
UBE2D3-203ENST00000343106 YTHDC1Q96MU7 727 aaKnown RBP14.76□□□□□ -0.05
UBE2D3-203ENST00000343106 KIF21BO75037 1637 aa14.76□□□□□ -0.05
UBE2D3-203ENST00000343106 CENPBP07199 599 aaPredicted RBP14.75□□□□□ -0.05
UBE2D3-203ENST00000343106 GTF3C3Q9Y5Q9 886 aa14.75□□□□□ -0.05
UBE2D3-203ENST00000343106 KANK4Q5T7N3 995 aaPredicted RBP14.7□□□□□ -0.06
UBE2D3-203ENST00000343106 MIER1Q8N108 512 aa14.68□□□□□ -0.06
UBE2D3-203ENST00000343106 TOP2BQ02880 1626 aa14.67□□□□□ -0.06
UBE2D3-203ENST00000343106 ITGAEP38570 1179 aa14.64□□□□□ -0.07
UBE2D3-203ENST00000343106 NCAPD3P42695 1498 aa14.62□□□□□ -0.07
UBE2D3-203ENST00000343106 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
UBE2D3-203ENST00000343106 PELP1Q8IZL8 1130 aaKnown RBP14.61□□□□□ -0.07
UBE2D3-203ENST00000343106 CUX1P39880 1505 aa14.61□□□□□ -0.07
UBE2D3-203ENST00000343106 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
UBE2D3-203ENST00000343106 ARAP1Q96P48 1450 aa14.59□□□□□ -0.07
UBE2D3-203ENST00000343106 BIVM-ERCC5R4GMW8 1640 aa14.54□□□□□ -0.08
UBE2D3-203ENST00000343106 CFTRP13569 1480 aa14.54□□□□□ -0.08
UBE2D3-203ENST00000343106 ERICH3Q5RHP9 1530 aa14.53□□□□□ -0.08
UBE2D3-203ENST00000343106 DHX57Q6P158 1386 aaKnown RBP14.53□□□□□ -0.08
UBE2D3-203ENST00000343106 HMGXB3Q12766 1538 aa14.52□□□□□ -0.08
UBE2D3-203ENST00000343106 ATP1B4Q9UN42 357 aaPredicted RBP14.51□□□□□ -0.09
UBE2D3-203ENST00000343106 P3H3Q8IVL6 736 aa14.51□□□□□ -0.09
UBE2D3-203ENST00000343106 IGF1RP08069 1367 aa14.49□□□□□ -0.09
UBE2D3-203ENST00000343106 CUX2O14529 1486 aa14.49□□□□□ -0.09
UBE2D3-203ENST00000343106 ARHGAP35Q9NRY4 1499 aa14.47□□□□□ -0.09
UBE2D3-203ENST00000343106 CCNB3Q8WWL7 1395 aa14.45□□□□□ -0.1
UBE2D3-203ENST00000343106 CADPSQ9ULU8 1353 aa14.44□□□□□ -0.1
UBE2D3-203ENST00000343106 CARMIL1Q5VZK9 1371 aa14.43□□□□□ -0.1
UBE2D3-203ENST00000343106 CLSPNQ9HAW4 1339 aa14.43□□□□□ -0.1
UBE2D3-203ENST00000343106 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
UBE2D3-203ENST00000343106 FAM50AQ14320 339 aaKnown RBP14.41□□□□□ -0.1
UBE2D3-203ENST00000343106 FGD5Q6ZNL6 1462 aa14.37□□□□□ -0.11
UBE2D3-203ENST00000343106 RAB3GAP2Q9H2M9 1393 aa14.35□□□□□ -0.11
UBE2D3-203ENST00000343106 SIN3AQ96ST3 1273 aa14.32□□□□□ -0.12
UBE2D3-203ENST00000343106 PHLDB1Q86UU1 1377 aa14.32□□□□□ -0.12
UBE2D3-203ENST00000343106 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
UBE2D3-203ENST00000343106 FANCD2Q9BXW9 1451 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms