RNA–Protein interactions for RNA: ENST00000541562.5

VARS2-211, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2 BASIC

Gene VARS2, Length 3,566 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-211ENST00000541562 NISCHQ9Y2I1 1504 aa29.93■■■□□ 2.38
VARS2-211ENST00000541562 SHROOM4Q9ULL8 1493 aa27.17■■□□□ 1.94
VARS2-211ENST00000541562 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
VARS2-211ENST00000541562 SUPT5HO00267 1087 aaKnown RBP26.69■■□□□ 1.86
VARS2-211ENST00000541562 EHMT2Q96KQ7 1210 aa25.35■■□□□ 1.65
VARS2-211ENST00000541562 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
VARS2-211ENST00000541562 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
VARS2-211ENST00000541562 LOC105371045A0A1W2PR82 267 aa25.13■■□□□ 1.61
VARS2-211ENST00000541562 PCGF6Q9BYE7 350 aa25.11■■□□□ 1.61
VARS2-211ENST00000541562 MYO15BQ96JP2 1530 aa25.08■■□□□ 1.6
VARS2-211ENST00000541562 FAM9AQ8IZU1 332 aaPredicted RBP24.94■■□□□ 1.58
VARS2-211ENST00000541562 PPARGC1BQ86YN6 1023 aaKnown RBP24.8■■□□□ 1.56
VARS2-211ENST00000541562 CCDC180Q9P1Z9 1646 aa24.7■■□□□ 1.54
VARS2-211ENST00000541562 HRCP23327 699 aa24.47■■□□□ 1.51
VARS2-211ENST00000541562 ABCC9O60706 1549 aa24.42■■□□□ 1.5
VARS2-211ENST00000541562 TRIM41Q8WV44 630 aa24.39■■□□□ 1.5
VARS2-211ENST00000541562 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
VARS2-211ENST00000541562 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
VARS2-211ENST00000541562 RSF1Q96T23 1441 aaPredicted RBP24■■□□□ 1.43
VARS2-211ENST00000541562 TRIM26Q12899 539 aaPredicted RBP23.93■■□□□ 1.42
VARS2-211ENST00000541562 CECR2Q9BXF3 1484 aa23.92■■□□□ 1.42
VARS2-211ENST00000541562 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.412e-7■■■■□ 25.2
VARS2-211ENST00000541562 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
VARS2-211ENST00000541562 RANGAP1P46060 587 aaPredicted RBP23.81■■□□□ 1.4
VARS2-211ENST00000541562 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
VARS2-211ENST00000541562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.66■■□□□ 1.38
VARS2-211ENST00000541562 MROH2BQ7Z745 1585 aa23.6■■□□□ 1.37
VARS2-211ENST00000541562 UBTFP17480 764 aaKnown RBP23.47■■□□□ 1.35
VARS2-211ENST00000541562 WIZO95785 1651 aa23.47■■□□□ 1.35
VARS2-211ENST00000541562 CCER1Q8TC90 406 aaPredicted RBP23.44■■□□□ 1.34
VARS2-211ENST00000541562 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
VARS2-211ENST00000541562 HNRNPUL2Q1KMD3 747 aaKnown RBP23.17■■□□□ 1.3
VARS2-211ENST00000541562 NACADO15069 1562 aa23.16■■□□□ 1.3
VARS2-211ENST00000541562 CCDC88BA6NC98 1476 aa23.14■■□□□ 1.3
VARS2-211ENST00000541562 SOGA1O94964 1423 aa23.14■■□□□ 1.3
VARS2-211ENST00000541562 ZEB1P37275 1124 aaPredicted RBP23.09■■□□□ 1.29
VARS2-211ENST00000541562 RUSC2Q8N2Y8 1516 aa23.07■■□□□ 1.28
VARS2-211ENST00000541562 CSRNP3Q8WYN3 585 aa23■■□□□ 1.27
VARS2-211ENST00000541562 YTHDC1Q96MU7 727 aaKnown RBP22.99■■□□□ 1.27
VARS2-211ENST00000541562 BAZ1AQ9NRL2 1556 aaPredicted RBP22.88■■□□□ 1.25
VARS2-211ENST00000541562 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
VARS2-211ENST00000541562 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
VARS2-211ENST00000541562 ITGAEP38570 1179 aa22.83■■□□□ 1.25
VARS2-211ENST00000541562 APLP2Q06481 763 aa22.79■■□□□ 1.24
VARS2-211ENST00000541562 DIEXFQ68CQ4 756 aaKnown RBP22.79■■□□□ 1.24
VARS2-211ENST00000541562 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
VARS2-211ENST00000541562 NEUROD1Q13562 356 aa22.7■■□□□ 1.22
VARS2-211ENST00000541562 SMARCA2P51531 1590 aa22.68■■□□□ 1.22
VARS2-211ENST00000541562 ATP1B4Q9UN42 357 aaPredicted RBP22.67■■□□□ 1.22
VARS2-211ENST00000541562 TOP2AP11388 1531 aaKnown RBP22.66■■□□□ 1.22
VARS2-211ENST00000541562 WRNQ14191 1432 aaPredicted RBP eCLIP22.63■■□□□ 1.21
VARS2-211ENST00000541562 UNC13AQ9UPW8 1703 aa22.56■■□□□ 1.2
VARS2-211ENST00000541562 GTF3C3Q9Y5Q9 886 aa22.55■■□□□ 1.2
VARS2-211ENST00000541562 P3H3Q8IVL6 736 aa22.53■■□□□ 1.2
VARS2-211ENST00000541562 TNIKQ9UKE5 1360 aa22.52■■□□□ 1.2
VARS2-211ENST00000541562 CLIP1P30622 1438 aa22.46■■□□□ 1.19
VARS2-211ENST00000541562 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
VARS2-211ENST00000541562 BAZ1BQ9UIG0 1483 aaKnown RBP22.43■■□□□ 1.18
VARS2-211ENST00000541562 ACIN1Q9UKV3 1341 aaKnown RBP22.43■■□□□ 1.18
VARS2-211ENST00000541562 BICRAQ9NZM4 1560 aa22.41■■□□□ 1.18
VARS2-211ENST00000541562 KANK4Q5T7N3 995 aaPredicted RBP22.41■■□□□ 1.18
VARS2-211ENST00000541562 MIER1Q8N108 512 aa22.41■■□□□ 1.18
VARS2-211ENST00000541562 GOLGA3Q08378 1498 aa22.41■■□□□ 1.18
VARS2-211ENST00000541562 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
VARS2-211ENST00000541562 ZNF316A6NFI3 1004 aaPredicted RBP22.39■■□□□ 1.18
VARS2-211ENST00000541562 SYNJ1O43426 1573 aa22.37■■□□□ 1.17
VARS2-211ENST00000541562 ATAD2BQ9ULI0 1458 aa22.35■■□□□ 1.17
VARS2-211ENST00000541562 CENPBP07199 599 aaPredicted RBP22.3■■□□□ 1.16
VARS2-211ENST00000541562 CEP164Q9UPV0 1460 aa22.21■■□□□ 1.15
VARS2-211ENST00000541562 HIRIP3Q9BW71 556 aaPredicted RBP22.2■■□□□ 1.15
VARS2-211ENST00000541562 FAM50AQ14320 339 aaKnown RBP22.18■■□□□ 1.14
VARS2-211ENST00000541562 ARID3CA6NKF2 412 aa22.16■■□□□ 1.14
VARS2-211ENST00000541562 EEA1Q15075 1411 aa22.16■■□□□ 1.14
VARS2-211ENST00000541562 VPS8Q8N3P4 1428 aa22.09■■□□□ 1.13
VARS2-211ENST00000541562 SIN3AQ96ST3 1273 aa21.99■■□□□ 1.11
VARS2-211ENST00000541562 KIF21BO75037 1637 aa21.98■■□□□ 1.11
VARS2-211ENST00000541562 KCNH8Q96L42 1107 aa21.98■■□□□ 1.11
VARS2-211ENST00000541562 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
VARS2-211ENST00000541562 ARAP1Q96P48 1450 aa21.92■■□□□ 1.1
VARS2-211ENST00000541562 CUX2O14529 1486 aa21.9■■□□□ 1.1
VARS2-211ENST00000541562 CNGB1Q14028 1251 aaPredicted RBP21.88■■□□□ 1.09
VARS2-211ENST00000541562 BCANQ96GW7 911 aa21.88■■□□□ 1.09
VARS2-211ENST00000541562 KIF27Q86VH2 1401 aa21.87■■□□□ 1.09
VARS2-211ENST00000541562 CUX1P39880 1505 aa21.86■■□□□ 1.09
VARS2-211ENST00000541562 DDX10Q13206 875 aaKnown RBP21.83■■□□□ 1.09
VARS2-211ENST00000541562 DHX57Q6P158 1386 aaKnown RBP21.82■■□□□ 1.08
VARS2-211ENST00000541562 PEG3Q9GZU2 1588 aa21.76■■□□□ 1.07
VARS2-211ENST00000541562 CHIC2Q9UKJ5 165 aa21.76■■□□□ 1.07
VARS2-211ENST00000541562 TOP2BQ02880 1626 aa21.75■■□□□ 1.07
VARS2-211ENST00000541562 CARMIL1Q5VZK9 1371 aa21.74■■□□□ 1.07
VARS2-211ENST00000541562 IGF1RP08069 1367 aa21.73■■□□□ 1.07
VARS2-211ENST00000541562 CCNB3Q8WWL7 1395 aa21.73■■□□□ 1.07
VARS2-211ENST00000541562 PRXQ9BXM0 1461 aa21.72■■□□□ 1.07
VARS2-211ENST00000541562 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
VARS2-211ENST00000541562 ARHGAP35Q9NRY4 1499 aa21.69■■□□□ 1.06
VARS2-211ENST00000541562 NESP48681 1621 aa21.69■■□□□ 1.06
VARS2-211ENST00000541562 RAB3GAP2Q9H2M9 1393 aa21.68■■□□□ 1.06
VARS2-211ENST00000541562 FHOD3Q2V2M9 1422 aa21.67■■□□□ 1.06
VARS2-211ENST00000541562 TDRD9Q8NDG6 1382 aaKnown RBP21.66■■□□□ 1.06
VARS2-211ENST00000541562 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms