RNA–Protein interactions for RNA: ENST00000394804.6

UBE2D3-209, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 4,166 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-209ENST00000394804 NISCHQ9Y2I1 1504 aa22.75■■□□□ 1.23
UBE2D3-209ENST00000394804 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
UBE2D3-209ENST00000394804 SHROOM4Q9ULL8 1493 aa19.86■□□□□ 0.77
UBE2D3-209ENST00000394804 DCAF8L2P0C7V8 631 aa19.83■□□□□ 0.76
UBE2D3-209ENST00000394804 SUPT5HO00267 1087 aaKnown RBP19.82■□□□□ 0.76
UBE2D3-209ENST00000394804 ABCC9O60706 1549 aa19.65■□□□□ 0.74
UBE2D3-209ENST00000394804 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
UBE2D3-209ENST00000394804 PCGF6Q9BYE7 350 aa18.84■□□□□ 0.61
UBE2D3-209ENST00000394804 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
UBE2D3-209ENST00000394804 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
UBE2D3-209ENST00000394804 NACADO15069 1562 aa18.74■□□□□ 0.59
UBE2D3-209ENST00000394804 DCAF1Q9Y4B6 1507 aa18.63■□□□□ 0.57
UBE2D3-209ENST00000394804 HRCP23327 699 aa18.62■□□□□ 0.57
UBE2D3-209ENST00000394804 MYO15BQ96JP2 1530 aa18.56■□□□□ 0.56
UBE2D3-209ENST00000394804 PABPN1Q86U42 306 aaKnown RBP eCLIP18.56■□□□□ 0.56
UBE2D3-209ENST00000394804 SCRIBQ14160 1630 aa18.51■□□□□ 0.55
UBE2D3-209ENST00000394804 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
UBE2D3-209ENST00000394804 FAM9AQ8IZU1 332 aaPredicted RBP18.43■□□□□ 0.54
UBE2D3-209ENST00000394804 TRIM41Q8WV44 630 aa18.42■□□□□ 0.54
UBE2D3-209ENST00000394804 LOC105371045A0A1W2PR82 267 aa18.37■□□□□ 0.53
UBE2D3-209ENST00000394804 TRIM26Q12899 539 aaPredicted RBP18.32■□□□□ 0.52
UBE2D3-209ENST00000394804 ZEB1P37275 1124 aaPredicted RBP18.31■□□□□ 0.52
UBE2D3-209ENST00000394804 UNC13AQ9UPW8 1703 aa18.25■□□□□ 0.51
UBE2D3-209ENST00000394804 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
UBE2D3-209ENST00000394804 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
UBE2D3-209ENST00000394804 CCER1Q8TC90 406 aaPredicted RBP17.94■□□□□ 0.46
UBE2D3-209ENST00000394804 TTBK1Q5TCY1 1321 aaPredicted RBP17.9■□□□□ 0.46
UBE2D3-209ENST00000394804 CECR2Q9BXF3 1484 aa17.84■□□□□ 0.45
UBE2D3-209ENST00000394804 DNAJC5BQ9UF47 199 aa17.82■□□□□ 0.44
UBE2D3-209ENST00000394804 APLP2Q06481 763 aa17.79■□□□□ 0.44
UBE2D3-209ENST00000394804 UBTFP17480 764 aaKnown RBP17.76■□□□□ 0.43
UBE2D3-209ENST00000394804 PELP1Q8IZL8 1130 aaKnown RBP17.73■□□□□ 0.43
UBE2D3-209ENST00000394804 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
UBE2D3-209ENST00000394804 CENPBP07199 599 aaPredicted RBP17.72■□□□□ 0.43
UBE2D3-209ENST00000394804 RSF1Q96T23 1441 aaPredicted RBP17.71■□□□□ 0.43
UBE2D3-209ENST00000394804 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
UBE2D3-209ENST00000394804 BAZ1AQ9NRL2 1556 aaPredicted RBP17.6■□□□□ 0.41
UBE2D3-209ENST00000394804 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
UBE2D3-209ENST00000394804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
UBE2D3-209ENST00000394804 SMARCA4P51532 1647 aa17.57■□□□□ 0.4
UBE2D3-209ENST00000394804 RANGAP1P46060 587 aaPredicted RBP17.51■□□□□ 0.39
UBE2D3-209ENST00000394804 ATAD2BQ9ULI0 1458 aa17.47■□□□□ 0.39
UBE2D3-209ENST00000394804 WIZO95785 1651 aa17.44■□□□□ 0.38
UBE2D3-209ENST00000394804 DIEXFQ68CQ4 756 aaKnown RBP17.41■□□□□ 0.38
UBE2D3-209ENST00000394804 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
UBE2D3-209ENST00000394804 SMARCA2P51531 1590 aa17.39■□□□□ 0.37
UBE2D3-209ENST00000394804 NCAPD3P42695 1498 aa17.34■□□□□ 0.37
UBE2D3-209ENST00000394804 HNRNPUL2Q1KMD3 747 aaKnown RBP17.34■□□□□ 0.37
UBE2D3-209ENST00000394804 YTHDC1Q96MU7 727 aaKnown RBP17.34■□□□□ 0.37
UBE2D3-209ENST00000394804 CSRNP3Q8WYN3 585 aa17.32■□□□□ 0.36
UBE2D3-209ENST00000394804 PEG3Q9GZU2 1588 aa17.24■□□□□ 0.35
UBE2D3-209ENST00000394804 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
UBE2D3-209ENST00000394804 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.34
UBE2D3-209ENST00000394804 TOP2AP11388 1531 aaKnown RBP17.17■□□□□ 0.34
UBE2D3-209ENST00000394804 ZNF316A6NFI3 1004 aaPredicted RBP17.17■□□□□ 0.34
UBE2D3-209ENST00000394804 GTF3C3Q9Y5Q9 886 aa17.14■□□□□ 0.33
UBE2D3-209ENST00000394804 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
UBE2D3-209ENST00000394804 CEP162Q5TB80 1403 aa17.12■□□□□ 0.33
UBE2D3-209ENST00000394804 EEA1Q15075 1411 aa17.12■□□□□ 0.33
UBE2D3-209ENST00000394804 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
UBE2D3-209ENST00000394804 MYT1Q01538 1121 aa17.07■□□□□ 0.32
UBE2D3-209ENST00000394804 TNIKQ9UKE5 1360 aa17.06■□□□□ 0.32
UBE2D3-209ENST00000394804 NESP48681 1621 aa17.05■□□□□ 0.32
UBE2D3-209ENST00000394804 ATP1B4Q9UN42 357 aaPredicted RBP17.04■□□□□ 0.32
UBE2D3-209ENST00000394804 NEUROD1Q13562 356 aa17.02■□□□□ 0.32
UBE2D3-209ENST00000394804 ITGAEP38570 1179 aa17.02■□□□□ 0.31
UBE2D3-209ENST00000394804 GOLGA3Q08378 1498 aa17.01■□□□□ 0.31
UBE2D3-209ENST00000394804 CADPSQ9ULU8 1353 aa16.97■□□□□ 0.31
UBE2D3-209ENST00000394804 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.315e-6■■■■■ 29.2
UBE2D3-209ENST00000394804 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
UBE2D3-209ENST00000394804 SOGA1O94964 1423 aa16.94■□□□□ 0.3
UBE2D3-209ENST00000394804 CLIP1P30622 1438 aa16.94■□□□□ 0.3
UBE2D3-209ENST00000394804 ERCC6Q03468 1493 aa16.92■□□□□ 0.3
UBE2D3-209ENST00000394804 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
UBE2D3-209ENST00000394804 CFTRP13569 1480 aa16.84■□□□□ 0.29
UBE2D3-209ENST00000394804 PDS5BQ9NTI5 1447 aa16.83■□□□□ 0.29
UBE2D3-209ENST00000394804 NEFLP07196 543 aa16.82■□□□□ 0.28
UBE2D3-209ENST00000394804 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
UBE2D3-209ENST00000394804 FANCD2Q9BXW9 1451 aa16.79■□□□□ 0.28
UBE2D3-209ENST00000394804 MIER1Q8N108 512 aa16.76■□□□□ 0.27
UBE2D3-209ENST00000394804 FAM50AQ14320 339 aaKnown RBP16.74■□□□□ 0.27
UBE2D3-209ENST00000394804 VPS8Q8N3P4 1428 aa16.69■□□□□ 0.26
UBE2D3-209ENST00000394804 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
UBE2D3-209ENST00000394804 RUSC2Q8N2Y8 1516 aa16.67■□□□□ 0.26
UBE2D3-209ENST00000394804 CLSPNQ9HAW4 1339 aa16.64■□□□□ 0.26
UBE2D3-209ENST00000394804 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
UBE2D3-209ENST00000394804 KIF27Q86VH2 1401 aa16.57■□□□□ 0.24
UBE2D3-209ENST00000394804 URB2Q14146 1524 aaKnown RBP16.56■□□□□ 0.24
UBE2D3-209ENST00000394804 P3H3Q8IVL6 736 aa16.56■□□□□ 0.24
UBE2D3-209ENST00000394804 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
UBE2D3-209ENST00000394804 ERICH6Q7L0X2 663 aa16.53■□□□□ 0.24
UBE2D3-209ENST00000394804 ANP32CO43423 234 aa16.51■□□□□ 0.23
UBE2D3-209ENST00000394804 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
UBE2D3-209ENST00000394804 RAPGEF2Q9Y4G8 1499 aa16.51■□□□□ 0.23
UBE2D3-209ENST00000394804 CUX1P39880 1505 aa16.49■□□□□ 0.23
UBE2D3-209ENST00000394804 THOC2Q8NI27 1593 aaKnown RBP16.48■□□□□ 0.23
UBE2D3-209ENST00000394804 BCANQ96GW7 911 aa16.47■□□□□ 0.23
UBE2D3-209ENST00000394804 RAD54L2Q9Y4B4 1467 aa16.45■□□□□ 0.22
UBE2D3-209ENST00000394804 CCNB3Q8WWL7 1395 aa16.44■□□□□ 0.22
UBE2D3-209ENST00000394804 FGD5Q6ZNL6 1462 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms