RNA–Protein interactions for RNA: ENST00000394801.8

UBE2D3-207, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,368 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-207ENST00000394801 NISCHQ9Y2I1 1504 aa32.97■■■□□ 2.87
UBE2D3-207ENST00000394801 CCDC180Q9P1Z9 1646 aa28.31■■■□□ 2.12
UBE2D3-207ENST00000394801 ZCCHC6Q5VYS8 1495 aaKnown RBP27.83■■■□□ 2.05
UBE2D3-207ENST00000394801 SHROOM4Q9ULL8 1493 aa27.45■■□□□ 1.99
UBE2D3-207ENST00000394801 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
UBE2D3-207ENST00000394801 DCAF8L2P0C7V8 631 aa27.05■■□□□ 1.92
UBE2D3-207ENST00000394801 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
UBE2D3-207ENST00000394801 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
UBE2D3-207ENST00000394801 NACADO15069 1562 aa26.24■■□□□ 1.79
UBE2D3-207ENST00000394801 ABCC9O60706 1549 aa26.21■■□□□ 1.79
UBE2D3-207ENST00000394801 SCRIBQ14160 1630 aa26.2■■□□□ 1.78
UBE2D3-207ENST00000394801 CHIC1Q5VXU3 224 aa26.06■■□□□ 1.76
UBE2D3-207ENST00000394801 RSF1Q96T23 1441 aaPredicted RBP25.89■■□□□ 1.74
UBE2D3-207ENST00000394801 RB1CC1Q8TDY2 1594 aa25.83■■□□□ 1.73
UBE2D3-207ENST00000394801 CECR2Q9BXF3 1484 aa25.6■■□□□ 1.69
UBE2D3-207ENST00000394801 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
UBE2D3-207ENST00000394801 UNC13AQ9UPW8 1703 aa25.37■■□□□ 1.65
UBE2D3-207ENST00000394801 BAZ1AQ9NRL2 1556 aaPredicted RBP25.37■■□□□ 1.65
UBE2D3-207ENST00000394801 WIZO95785 1651 aa25.34■■□□□ 1.65
UBE2D3-207ENST00000394801 SMARCA4P51532 1647 aa25.16■■□□□ 1.62
UBE2D3-207ENST00000394801 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
UBE2D3-207ENST00000394801 LOC105371045A0A1W2PR82 267 aa25.12■■□□□ 1.61
UBE2D3-207ENST00000394801 BICRAQ9NZM4 1560 aa25.11■■□□□ 1.61
UBE2D3-207ENST00000394801 TOP2AP11388 1531 aaKnown RBP25.05■■□□□ 1.6
UBE2D3-207ENST00000394801 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
UBE2D3-207ENST00000394801 PABPN1Q86U42 306 aaKnown RBP eCLIP24.92■■□□□ 1.58
UBE2D3-207ENST00000394801 CCDC88BA6NC98 1476 aa24.87■■□□□ 1.57
UBE2D3-207ENST00000394801 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
UBE2D3-207ENST00000394801 PEG3Q9GZU2 1588 aa24.83■■□□□ 1.57
UBE2D3-207ENST00000394801 PCGF6Q9BYE7 350 aa24.73■■□□□ 1.55
UBE2D3-207ENST00000394801 FAM9AQ8IZU1 332 aaPredicted RBP24.71■■□□□ 1.55
UBE2D3-207ENST00000394801 HRCP23327 699 aa24.61■■□□□ 1.53
UBE2D3-207ENST00000394801 ATAD2BQ9ULI0 1458 aa24.6■■□□□ 1.53
UBE2D3-207ENST00000394801 ABCC8Q09428 1581 aa24.58■■□□□ 1.52
UBE2D3-207ENST00000394801 TRIM26Q12899 539 aaPredicted RBP24.52■■□□□ 1.52
UBE2D3-207ENST00000394801 BAZ1BQ9UIG0 1483 aaKnown RBP24.47■■□□□ 1.51
UBE2D3-207ENST00000394801 EHMT2Q96KQ7 1210 aa24.34■■□□□ 1.49
UBE2D3-207ENST00000394801 EEA1Q15075 1411 aa24.33■■□□□ 1.49
UBE2D3-207ENST00000394801 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.485e-6■■■■■ 29.2
UBE2D3-207ENST00000394801 SOGA1O94964 1423 aa24.3■■□□□ 1.48
UBE2D3-207ENST00000394801 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
UBE2D3-207ENST00000394801 HMGXB3Q12766 1538 aa24.24■■□□□ 1.47
UBE2D3-207ENST00000394801 DNAJC5BQ9UF47 199 aa24.23■■□□□ 1.47
UBE2D3-207ENST00000394801 CSRNP3Q8WYN3 585 aa24.2■■□□□ 1.46
UBE2D3-207ENST00000394801 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
UBE2D3-207ENST00000394801 RUSC2Q8N2Y8 1516 aa24.17■■□□□ 1.46
UBE2D3-207ENST00000394801 TNIKQ9UKE5 1360 aa24.14■■□□□ 1.46
UBE2D3-207ENST00000394801 CEP162Q5TB80 1403 aa24.06■■□□□ 1.44
UBE2D3-207ENST00000394801 GOLGA3Q08378 1498 aa24.04■■□□□ 1.44
UBE2D3-207ENST00000394801 TOP2BQ02880 1626 aa24.02■■□□□ 1.44
UBE2D3-207ENST00000394801 KIF21BO75037 1637 aa23.97■■□□□ 1.43
UBE2D3-207ENST00000394801 CEP164Q9UPV0 1460 aa23.96■■□□□ 1.43
UBE2D3-207ENST00000394801 BIVM-ERCC5R4GMW8 1640 aa23.96■■□□□ 1.43
UBE2D3-207ENST00000394801 PPARGC1BQ86YN6 1023 aaKnown RBP23.94■■□□□ 1.42
UBE2D3-207ENST00000394801 UBTFP17480 764 aaKnown RBP23.93■■□□□ 1.42
UBE2D3-207ENST00000394801 CFTRP13569 1480 aa23.93■■□□□ 1.42
UBE2D3-207ENST00000394801 ZEB1P37275 1124 aaPredicted RBP23.89■■□□□ 1.42
UBE2D3-207ENST00000394801 CUX1P39880 1505 aa23.8■■□□□ 1.4
UBE2D3-207ENST00000394801 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
UBE2D3-207ENST00000394801 RAPGEF2Q9Y4G8 1499 aa23.75■■□□□ 1.39
UBE2D3-207ENST00000394801 CC2D2AQ9P2K1 1620 aa23.72■■□□□ 1.39
UBE2D3-207ENST00000394801 CADPSQ9ULU8 1353 aa23.7■■□□□ 1.38
UBE2D3-207ENST00000394801 CLIP1P30622 1438 aa23.69■■□□□ 1.38
UBE2D3-207ENST00000394801 PRXQ9BXM0 1461 aa23.69■■□□□ 1.38
UBE2D3-207ENST00000394801 ERICH3Q5RHP9 1530 aa23.68■■□□□ 1.38
UBE2D3-207ENST00000394801 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
UBE2D3-207ENST00000394801 VPS8Q8N3P4 1428 aa23.6■■□□□ 1.37
UBE2D3-207ENST00000394801 TTBK1Q5TCY1 1321 aaPredicted RBP23.48■■□□□ 1.35
UBE2D3-207ENST00000394801 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.44■■□□□ 1.34
UBE2D3-207ENST00000394801 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
UBE2D3-207ENST00000394801 FGD5Q6ZNL6 1462 aa23.41■■□□□ 1.34
UBE2D3-207ENST00000394801 CCER1Q8TC90 406 aaPredicted RBP23.41■■□□□ 1.34
UBE2D3-207ENST00000394801 CUX2O14529 1486 aa23.4■■□□□ 1.34
UBE2D3-207ENST00000394801 IGF1RP08069 1367 aa23.4■■□□□ 1.34
UBE2D3-207ENST00000394801 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
UBE2D3-207ENST00000394801 APLP2Q06481 763 aa23.37■■□□□ 1.33
UBE2D3-207ENST00000394801 RANGAP1P46060 587 aaPredicted RBP23.34■■□□□ 1.33
UBE2D3-207ENST00000394801 DNMBPQ6XZF7 1577 aa23.32■■□□□ 1.32
UBE2D3-207ENST00000394801 CARMIL1Q5VZK9 1371 aa23.27■■□□□ 1.32
UBE2D3-207ENST00000394801 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
UBE2D3-207ENST00000394801 NESP48681 1621 aa23.27■■□□□ 1.32
UBE2D3-207ENST00000394801 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
UBE2D3-207ENST00000394801 ARHGAP35Q9NRY4 1499 aa23.25■■□□□ 1.31
UBE2D3-207ENST00000394801 ABCA10Q8WWZ4 1543 aa23.23■■□□□ 1.31
UBE2D3-207ENST00000394801 POLA1P09884 1462 aaPredicted RBP23.21■■□□□ 1.31
UBE2D3-207ENST00000394801 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
UBE2D3-207ENST00000394801 HNRNPUL2Q1KMD3 747 aaKnown RBP23.12■■□□□ 1.29
UBE2D3-207ENST00000394801 KANK4Q5T7N3 995 aaPredicted RBP23.11■■□□□ 1.29
UBE2D3-207ENST00000394801 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
UBE2D3-207ENST00000394801 PDS5BQ9NTI5 1447 aa23.09■■□□□ 1.29
UBE2D3-207ENST00000394801 MAP3K1Q13233 1512 aa23.05■■□□□ 1.28
UBE2D3-207ENST00000394801 CUL7Q14999 1698 aa23.05■■□□□ 1.28
UBE2D3-207ENST00000394801 WDR97A6NE52 1622 aa23.04■■□□□ 1.28
UBE2D3-207ENST00000394801 RRBP1Q9P2E9 1410 aaKnown RBP23.03■■□□□ 1.28
UBE2D3-207ENST00000394801 FHAD1B1AJZ9 1412 aa22.96■■□□□ 1.27
UBE2D3-207ENST00000394801 ABCA5Q8WWZ7 1642 aa22.96■■□□□ 1.27
UBE2D3-207ENST00000394801 TIAM1Q13009 1591 aa22.95■■□□□ 1.27
UBE2D3-207ENST00000394801 KIF21AQ7Z4S6 1674 aa22.94■■□□□ 1.26
UBE2D3-207ENST00000394801 EFCAB5A4FU69 1503 aa22.93■■□□□ 1.26
UBE2D3-207ENST00000394801 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms