RNA–Protein interactions for RNA: ENST00000514755.5

UBE2D3-232, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-232ENST00000514755 AEBP2Q6ZN18 517 aaPredicted RBP30.6■■■□□ 2.49
UBE2D3-232ENST00000514755 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
UBE2D3-232ENST00000514755 NISCHQ9Y2I1 1504 aa26.92■■□□□ 1.9
UBE2D3-232ENST00000514755 PHF23Q9BUL5 403 aaPredicted RBP26.48■■□□□ 1.83
UBE2D3-232ENST00000514755 SENP3Q9H4L4 574 aaPredicted RBP25.95■■□□□ 1.74
UBE2D3-232ENST00000514755 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
UBE2D3-232ENST00000514755 FOXD1Q16676 465 aa24.03■■□□□ 1.44
UBE2D3-232ENST00000514755 CCDC180Q9P1Z9 1646 aa23.91■■□□□ 1.42
UBE2D3-232ENST00000514755 ABCC9O60706 1549 aa23.54■■□□□ 1.36
UBE2D3-232ENST00000514755 PPP6R1Q9UPN7 881 aa23.27■■□□□ 1.32
UBE2D3-232ENST00000514755 ADRA2BP18089 450 aa23.23■■□□□ 1.31
UBE2D3-232ENST00000514755 PIAS4Q8N2W9 510 aaPredicted RBP22.69■■□□□ 1.22
UBE2D3-232ENST00000514755 DCAF8L2P0C7V8 631 aa22.55■■□□□ 1.2
UBE2D3-232ENST00000514755 RB1CC1Q8TDY2 1594 aa22.54■■□□□ 1.2
UBE2D3-232ENST00000514755 NACADO15069 1562 aa22.5■■□□□ 1.19
UBE2D3-232ENST00000514755 ZCCHC6Q5VYS8 1495 aaKnown RBP22.42■■□□□ 1.18
UBE2D3-232ENST00000514755 MYO15BQ96JP2 1530 aa22.32■■□□□ 1.16
UBE2D3-232ENST00000514755 DCAF1Q9Y4B6 1507 aa22.22■■□□□ 1.15
UBE2D3-232ENST00000514755 MSH5O43196 834 aa22.11■■□□□ 1.13
UBE2D3-232ENST00000514755 UNC13AQ9UPW8 1703 aa22.11■■□□□ 1.13
UBE2D3-232ENST00000514755 PABPN1Q86U42 306 aaKnown RBP eCLIP22.01■■□□□ 1.11
UBE2D3-232ENST00000514755 BICRAQ9NZM4 1560 aa21.94■■□□□ 1.1
UBE2D3-232ENST00000514755 SCRIBQ14160 1630 aa21.89■■□□□ 1.09
UBE2D3-232ENST00000514755 DNAJC5BQ9UF47 199 aa21.72■■□□□ 1.07
UBE2D3-232ENST00000514755 PPP4R3CPQ6ZMV5 832 aa21.6■■□□□ 1.05
UBE2D3-232ENST00000514755 SHROOM4Q9ULL8 1493 aa21.57■■□□□ 1.04
UBE2D3-232ENST00000514755 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
UBE2D3-232ENST00000514755 KCNA4P22459 653 aa21.32■■□□□ 1
UBE2D3-232ENST00000514755 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
UBE2D3-232ENST00000514755 CC2D2AQ9P2K1 1620 aa21.27■■□□□ 1
UBE2D3-232ENST00000514755 CECR2Q9BXF3 1484 aa21.13■□□□□ 0.97
UBE2D3-232ENST00000514755 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
UBE2D3-232ENST00000514755 MAPK8IP2Q13387 824 aaPredicted RBP21.01■□□□□ 0.95
UBE2D3-232ENST00000514755 CNKSR2Q8WXI2 1034 aa20.98■□□□□ 0.95
UBE2D3-232ENST00000514755 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
UBE2D3-232ENST00000514755 BAZ1AQ9NRL2 1556 aaPredicted RBP20.84■□□□□ 0.93
UBE2D3-232ENST00000514755 ATAD2BQ9ULI0 1458 aa20.81■□□□□ 0.92
UBE2D3-232ENST00000514755 NPM3O75607 178 aaKnown RBP20.81■□□□□ 0.92
UBE2D3-232ENST00000514755 MROH2BQ7Z745 1585 aa20.79■□□□□ 0.92
UBE2D3-232ENST00000514755 NCAPD3P42695 1498 aa20.78■□□□□ 0.92
UBE2D3-232ENST00000514755 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
UBE2D3-232ENST00000514755 SMARCA2P51531 1590 aa20.73■□□□□ 0.91
UBE2D3-232ENST00000514755 PEG3Q9GZU2 1588 aa20.68■□□□□ 0.9
UBE2D3-232ENST00000514755 HMGXB3Q12766 1538 aa20.66■□□□□ 0.9
UBE2D3-232ENST00000514755 BAZ1BQ9UIG0 1483 aaKnown RBP20.62■□□□□ 0.89
UBE2D3-232ENST00000514755 WIZO95785 1651 aa20.57■□□□□ 0.88
UBE2D3-232ENST00000514755 RNF216Q9NWF9 866 aaPredicted RBP20.54■□□□□ 0.88
UBE2D3-232ENST00000514755 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.87
UBE2D3-232ENST00000514755 HOXD11P31277 338 aaPredicted RBP20.42■□□□□ 0.86
UBE2D3-232ENST00000514755 NESP48681 1621 aa20.38■□□□□ 0.85
UBE2D3-232ENST00000514755 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
UBE2D3-232ENST00000514755 TOP2AP11388 1531 aaKnown RBP20.3■□□□□ 0.84
UBE2D3-232ENST00000514755 ERCC6Q03468 1493 aa20.24■□□□□ 0.83
UBE2D3-232ENST00000514755 LAMC3Q9Y6N6 1575 aa20.22■□□□□ 0.83
UBE2D3-232ENST00000514755 CADPSQ9ULU8 1353 aa20.18■□□□□ 0.82
UBE2D3-232ENST00000514755 KIF21AQ7Z4S6 1674 aa20.11■□□□□ 0.81
UBE2D3-232ENST00000514755 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
UBE2D3-232ENST00000514755 PDS5BQ9NTI5 1447 aa20.08■□□□□ 0.8
UBE2D3-232ENST00000514755 CFTRP13569 1480 aa20.05■□□□□ 0.8
UBE2D3-232ENST00000514755 THOC2Q8NI27 1593 aaKnown RBP20.04■□□□□ 0.8
UBE2D3-232ENST00000514755 CUX2O14529 1486 aa20.02■□□□□ 0.8
UBE2D3-232ENST00000514755 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
UBE2D3-232ENST00000514755 FANCD2Q9BXW9 1451 aa19.96■□□□□ 0.79
UBE2D3-232ENST00000514755 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
UBE2D3-232ENST00000514755 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
UBE2D3-232ENST00000514755 MRC2Q9UBG0 1479 aa19.91■□□□□ 0.78
UBE2D3-232ENST00000514755 PRDM2Q13029 1718 aa19.88■□□□□ 0.77
UBE2D3-232ENST00000514755 WDR62O43379 1518 aa19.86■□□□□ 0.77
UBE2D3-232ENST00000514755 URB2Q14146 1524 aaKnown RBP19.79■□□□□ 0.76
UBE2D3-232ENST00000514755 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
UBE2D3-232ENST00000514755 DCAF8L1A6NGE4 600 aa19.72■□□□□ 0.75
UBE2D3-232ENST00000514755 CSRNP3Q8WYN3 585 aa19.68■□□□□ 0.74
UBE2D3-232ENST00000514755 ZBTB22O15209 634 aa19.66■□□□□ 0.74
UBE2D3-232ENST00000514755 TOPBP1Q92547 1522 aa19.64■□□□□ 0.73
UBE2D3-232ENST00000514755 SLC4A2P04920 1241 aa19.61■□□□□ 0.73
UBE2D3-232ENST00000514755 FOXD4L1Q9NU39 408 aa19.6■□□□□ 0.73
UBE2D3-232ENST00000514755 DNMBPQ6XZF7 1577 aa19.59■□□□□ 0.73
UBE2D3-232ENST00000514755 ABCC8Q09428 1581 aa19.56■□□□□ 0.72
UBE2D3-232ENST00000514755 DNAJC5Q9H3Z4 198 aa19.51■□□□□ 0.71
UBE2D3-232ENST00000514755 IFT140Q96RY7 1462 aa19.5■□□□□ 0.71
UBE2D3-232ENST00000514755 CUX1P39880 1505 aa19.5■□□□□ 0.71
UBE2D3-232ENST00000514755 ZNF608Q9ULD9 1512 aaPredicted RBP19.49■□□□□ 0.71
UBE2D3-232ENST00000514755 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
UBE2D3-232ENST00000514755 TARBP1Q13395 1621 aaKnown RBP19.43■□□□□ 0.7
UBE2D3-232ENST00000514755 FGD5Q6ZNL6 1462 aa19.43■□□□□ 0.7
UBE2D3-232ENST00000514755 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
UBE2D3-232ENST00000514755 SOGA1O94964 1423 aa19.38■□□□□ 0.69
UBE2D3-232ENST00000514755 EIF4G3O43432 1585 aaKnown RBP19.37■□□□□ 0.69
UBE2D3-232ENST00000514755 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.37■□□□□ 0.69
UBE2D3-232ENST00000514755 AQRO60306 1485 aaKnown RBP eCLIP19.36■□□□□ 0.694e-14■■■■□ 25.1
UBE2D3-232ENST00000514755 WRNQ14191 1432 aaPredicted RBP eCLIP19.32■□□□□ 0.685e-6■■■■■ 29.2
UBE2D3-232ENST00000514755 SYNJ1O43426 1573 aa19.32■□□□□ 0.68
UBE2D3-232ENST00000514755 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
UBE2D3-232ENST00000514755 TOP2BQ02880 1626 aa19.28■□□□□ 0.68
UBE2D3-232ENST00000514755 BIVM-ERCC5R4GMW8 1640 aa19.28■□□□□ 0.68
UBE2D3-232ENST00000514755 WDR97A6NE52 1622 aa19.27■□□□□ 0.68
UBE2D3-232ENST00000514755 MYCNP04198 464 aaPredicted RBP19.23■□□□□ 0.67
UBE2D3-232ENST00000514755 ABCA10Q8WWZ4 1543 aa19.2■□□□□ 0.66
UBE2D3-232ENST00000514755 OSCARQ8IYS5 282 aa19.2■□□□□ 0.66
UBE2D3-232ENST00000514755 SNAPC4Q5SXM2 1469 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms