RNA–Protein interactions for RNA: ENST00000508974.5

UBE2D3-228, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-228ENST00000508974 NISCHQ9Y2I1 1504 aa36.54■■■■□ 3.44
UBE2D3-228ENST00000508974 CCDC180Q9P1Z9 1646 aa32.66■■■□□ 2.82
UBE2D3-228ENST00000508974 ABCC9O60706 1549 aa32.36■■■□□ 2.77
UBE2D3-228ENST00000508974 AEBP2Q6ZN18 517 aaPredicted RBP30.95■■■□□ 2.55
UBE2D3-228ENST00000508974 RB1CC1Q8TDY2 1594 aa30.91■■■□□ 2.54
UBE2D3-228ENST00000508974 DCAF8L2P0C7V8 631 aa30.77■■■□□ 2.52
UBE2D3-228ENST00000508974 NACADO15069 1562 aa30.74■■■□□ 2.51
UBE2D3-228ENST00000508974 ZCCHC6Q5VYS8 1495 aaKnown RBP30.36■■■□□ 2.45
UBE2D3-228ENST00000508974 MYO15BQ96JP2 1530 aa30.35■■■□□ 2.45
UBE2D3-228ENST00000508974 UNC13AQ9UPW8 1703 aa30.33■■■□□ 2.45
UBE2D3-228ENST00000508974 PABPN1Q86U42 306 aaKnown RBP eCLIP30.16■■■□□ 2.42
UBE2D3-228ENST00000508974 DCAF1Q9Y4B6 1507 aa30.13■■■□□ 2.41
UBE2D3-228ENST00000508974 BICRAQ9NZM4 1560 aa30■■■□□ 2.39
UBE2D3-228ENST00000508974 DNAJC5BQ9UF47 199 aa29.95■■■□□ 2.39
UBE2D3-228ENST00000508974 SCRIBQ14160 1630 aa29.88■■■□□ 2.37
UBE2D3-228ENST00000508974 CHIC1Q5VXU3 224 aa29.69■■■□□ 2.34
UBE2D3-228ENST00000508974 SHROOM4Q9ULL8 1493 aa29.51■■■□□ 2.31
UBE2D3-228ENST00000508974 EIF4G1Q04637 1599 aaKnown RBP29.24■■■□□ 2.27
UBE2D3-228ENST00000508974 CC2D2AQ9P2K1 1620 aa29.23■■■□□ 2.27
UBE2D3-228ENST00000508974 CECR2Q9BXF3 1484 aa29.05■■■□□ 2.24
UBE2D3-228ENST00000508974 SMARCA4P51532 1647 aa28.47■■■□□ 2.15
UBE2D3-228ENST00000508974 BAZ1AQ9NRL2 1556 aaPredicted RBP28.35■■■□□ 2.13
UBE2D3-228ENST00000508974 ATAD2BQ9ULI0 1458 aa28.34■■■□□ 2.13
UBE2D3-228ENST00000508974 NCAPD3P42695 1498 aa28.34■■■□□ 2.13
UBE2D3-228ENST00000508974 SMARCA2P51531 1590 aa28.29■■■□□ 2.12
UBE2D3-228ENST00000508974 HMGXB3Q12766 1538 aa28.21■■■□□ 2.11
UBE2D3-228ENST00000508974 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.11
UBE2D3-228ENST00000508974 BAZ1BQ9UIG0 1483 aaKnown RBP28.14■■■□□ 2.09
UBE2D3-228ENST00000508974 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
UBE2D3-228ENST00000508974 WIZO95785 1651 aa27.94■■■□□ 2.06
UBE2D3-228ENST00000508974 NESP48681 1621 aa27.9■■■□□ 2.06
UBE2D3-228ENST00000508974 ERCC6Q03468 1493 aa27.89■■■□□ 2.06
UBE2D3-228ENST00000508974 LAMC3Q9Y6N6 1575 aa27.7■■■□□ 2.03
UBE2D3-228ENST00000508974 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.03
UBE2D3-228ENST00000508974 CUX2O14529 1486 aa27.64■■■□□ 2.01
UBE2D3-228ENST00000508974 KIF21AQ7Z4S6 1674 aa27.62■■■□□ 2.01
UBE2D3-228ENST00000508974 TOP2AP11388 1531 aaKnown RBP27.54■■■□□ 2
UBE2D3-228ENST00000508974 THOC2Q8NI27 1593 aaKnown RBP27.53■■■□□ 2
UBE2D3-228ENST00000508974 CADPSQ9ULU8 1353 aa27.51■■□□□ 1.99
UBE2D3-228ENST00000508974 PDS5BQ9NTI5 1447 aa27.49■■□□□ 1.99
UBE2D3-228ENST00000508974 CFTRP13569 1480 aa27.28■■□□□ 1.96
UBE2D3-228ENST00000508974 MRC2Q9UBG0 1479 aa27.27■■□□□ 1.96
UBE2D3-228ENST00000508974 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
UBE2D3-228ENST00000508974 FANCD2Q9BXW9 1451 aa27.25■■□□□ 1.95
UBE2D3-228ENST00000508974 CCDC88BA6NC98 1476 aa27.22■■□□□ 1.95
UBE2D3-228ENST00000508974 WDR62O43379 1518 aa27.2■■□□□ 1.94
UBE2D3-228ENST00000508974 PRDM2Q13029 1718 aa27.19■■□□□ 1.94
UBE2D3-228ENST00000508974 DNAJC5Q9H3Z4 198 aa27.17■■□□□ 1.94
UBE2D3-228ENST00000508974 URB2Q14146 1524 aaKnown RBP27.02■■□□□ 1.92
UBE2D3-228ENST00000508974 SUPT5HO00267 1087 aaKnown RBP26.85■■□□□ 1.89
UBE2D3-228ENST00000508974 TOPBP1Q92547 1522 aa26.78■■□□□ 1.88
UBE2D3-228ENST00000508974 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
UBE2D3-228ENST00000508974 ABCC8Q09428 1581 aa26.68■■□□□ 1.86
UBE2D3-228ENST00000508974 IFT140Q96RY7 1462 aa26.66■■□□□ 1.86
UBE2D3-228ENST00000508974 ZNF608Q9ULD9 1512 aaPredicted RBP26.64■■□□□ 1.85
UBE2D3-228ENST00000508974 EIF4G3O43432 1585 aaKnown RBP26.55■■□□□ 1.84
UBE2D3-228ENST00000508974 TARBP1Q13395 1621 aaKnown RBP26.54■■□□□ 1.84
UBE2D3-228ENST00000508974 POLA1P09884 1462 aaPredicted RBP26.53■■□□□ 1.84
UBE2D3-228ENST00000508974 CUX1P39880 1505 aa26.48■■□□□ 1.83
UBE2D3-228ENST00000508974 RAD54L2Q9Y4B4 1467 aa26.46■■□□□ 1.83
UBE2D3-228ENST00000508974 FGD5Q6ZNL6 1462 aa26.44■■□□□ 1.82
UBE2D3-228ENST00000508974 AQRO60306 1485 aaKnown RBP eCLIP26.43■■□□□ 1.824e-14■■■■□ 25.1
UBE2D3-228ENST00000508974 OSCARQ8IYS5 282 aa26.42■■□□□ 1.82
UBE2D3-228ENST00000508974 SOGA1O94964 1423 aa26.39■■□□□ 1.82
UBE2D3-228ENST00000508974 CHD1O14646 1710 aa26.34■■□□□ 1.81
UBE2D3-228ENST00000508974 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.8
UBE2D3-228ENST00000508974 TRIM41Q8WV44 630 aa26.28■■□□□ 1.8
UBE2D3-228ENST00000508974 WDR97A6NE52 1622 aa26.28■■□□□ 1.8
UBE2D3-228ENST00000508974 SENP3Q9H4L4 574 aaPredicted RBP26.24■■□□□ 1.79
UBE2D3-228ENST00000508974 FBLN2P98095 1184 aa26.23■■□□□ 1.79
UBE2D3-228ENST00000508974 SNAPC4Q5SXM2 1469 aa26.19■■□□□ 1.78
UBE2D3-228ENST00000508974 PBRM1Q86U86 1689 aa26.18■■□□□ 1.78
UBE2D3-228ENST00000508974 SYNJ1O43426 1573 aa26.17■■□□□ 1.78
UBE2D3-228ENST00000508974 BIVM-ERCC5R4GMW8 1640 aa26.17■■□□□ 1.78
UBE2D3-228ENST00000508974 RIMBP3CA6NJZ7 1639 aa26.16■■□□□ 1.78
UBE2D3-228ENST00000508974 RIMBP3BA6NNM3 1639 aa26.16■■□□□ 1.78
UBE2D3-228ENST00000508974 RIMBP3Q9UFD9 1639 aa26.16■■□□□ 1.78
UBE2D3-228ENST00000508974 WRNQ14191 1432 aaPredicted RBP eCLIP26.14■■□□□ 1.78
UBE2D3-228ENST00000508974 TOP2BQ02880 1626 aa26.14■■□□□ 1.78
UBE2D3-228ENST00000508974 GRIN2BQ13224 1484 aa26.12■■□□□ 1.77
UBE2D3-228ENST00000508974 PHF23Q9BUL5 403 aaPredicted RBP26.12■■□□□ 1.77
UBE2D3-228ENST00000508974 ABCA10Q8WWZ4 1543 aa26.1■■□□□ 1.77
UBE2D3-228ENST00000508974 GAPVD1Q14C86 1478 aa26.1■■□□□ 1.77
UBE2D3-228ENST00000508974 ABCA5Q8WWZ7 1642 aa26.1■■□□□ 1.77
UBE2D3-228ENST00000508974 MAGI1Q96QZ7 1491 aaPredicted RBP26.07■■□□□ 1.76
UBE2D3-228ENST00000508974 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
UBE2D3-228ENST00000508974 CHMP7Q8WUX9 453 aaPredicted RBP26.02■■□□□ 1.76
UBE2D3-228ENST00000508974 SYNJ2O15056 1496 aa26■■□□□ 1.75
UBE2D3-228ENST00000508974 CLASP1Q7Z460 1538 aa25.93■■□□□ 1.74
UBE2D3-228ENST00000508974 ADAMTS12P58397 1594 aa25.88■■□□□ 1.73
UBE2D3-228ENST00000508974 CYB5RLQ6IPT4 315 aa25.84■■□□□ 1.73
UBE2D3-228ENST00000508974 ARAP1Q96P48 1450 aa25.84■■□□□ 1.73
UBE2D3-228ENST00000508974 GRIN2AQ12879 1464 aa25.81■■□□□ 1.72
UBE2D3-228ENST00000508974 ERICH3Q5RHP9 1530 aa25.79■■□□□ 1.72
UBE2D3-228ENST00000508974 FHAD1B1AJZ9 1412 aa25.75■■□□□ 1.71
UBE2D3-228ENST00000508974 CEP170Q5SW79 1584 aa25.74■■□□□ 1.71
UBE2D3-228ENST00000508974 NUP160Q12769 1436 aa25.66■■□□□ 1.7
UBE2D3-228ENST00000508974 ERCC6L2Q5T890 1561 aa25.62■■□□□ 1.69
UBE2D3-228ENST00000508974 KIF27Q86VH2 1401 aa25.6■■□□□ 1.69
UBE2D3-228ENST00000508974 SHROOM2Q13796 1616 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms