RNA–Protein interactions for RNA: ENST00000505307.5

UBE2D3-220, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5

Gene UBE2D3, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-220ENST00000505307 NISCHQ9Y2I1 1504 aa49.65■■■■■ 5.54
UBE2D3-220ENST00000505307 CCDC180Q9P1Z9 1646 aa44.46■■■■■ 4.71
UBE2D3-220ENST00000505307 ABCC9O60706 1549 aa44.21■■■■■ 4.67
UBE2D3-220ENST00000505307 RB1CC1Q8TDY2 1594 aa42.26■■■■■ 4.36
UBE2D3-220ENST00000505307 NACADO15069 1562 aa42.04■■■■■ 4.32
UBE2D3-220ENST00000505307 DCAF8L2P0C7V8 631 aa41.81■■■■■ 4.28
UBE2D3-220ENST00000505307 MYO15BQ96JP2 1530 aa41.58■■■■■ 4.25
UBE2D3-220ENST00000505307 DNAJC5BQ9UF47 199 aa41.35■■■■■ 4.21
UBE2D3-220ENST00000505307 PABPN1Q86U42 306 aaKnown RBP eCLIP41.2■■■■■ 4.19
UBE2D3-220ENST00000505307 ZCCHC6Q5VYS8 1495 aaKnown RBP41.18■■■■■ 4.18
UBE2D3-220ENST00000505307 UNC13AQ9UPW8 1703 aa41.14■■■■■ 4.18
UBE2D3-220ENST00000505307 DCAF1Q9Y4B6 1507 aa41.09■■■■■ 4.17
UBE2D3-220ENST00000505307 BICRAQ9NZM4 1560 aa40.93■■■■■ 4.14
UBE2D3-220ENST00000505307 SHROOM4Q9ULL8 1493 aa40.58■■■■■ 4.09
UBE2D3-220ENST00000505307 SCRIBQ14160 1630 aa40.44■■■■■ 4.06
UBE2D3-220ENST00000505307 CC2D2AQ9P2K1 1620 aa39.96■■■■□ 3.99
UBE2D3-220ENST00000505307 EIF4G1Q04637 1599 aaKnown RBP39.94■■■■□ 3.98
UBE2D3-220ENST00000505307 CECR2Q9BXF3 1484 aa39.86■■■■□ 3.97
UBE2D3-220ENST00000505307 NCAPD3P42695 1498 aa38.81■■■■□ 3.8
UBE2D3-220ENST00000505307 ATAD2BQ9ULI0 1458 aa38.68■■■■□ 3.78
UBE2D3-220ENST00000505307 SMARCA4P51532 1647 aa38.65■■■■□ 3.78
UBE2D3-220ENST00000505307 SMARCA2P51531 1590 aa38.62■■■■□ 3.77
UBE2D3-220ENST00000505307 BAZ1AQ9NRL2 1556 aaPredicted RBP38.55■■■■□ 3.76
UBE2D3-220ENST00000505307 HMGXB3Q12766 1538 aa38.52■■■■□ 3.76
UBE2D3-220ENST00000505307 PEG3Q9GZU2 1588 aa38.33■■■■□ 3.73
UBE2D3-220ENST00000505307 BAZ1BQ9UIG0 1483 aaKnown RBP38.32■■■■□ 3.72
UBE2D3-220ENST00000505307 ERCC6Q03468 1493 aa38.22■■■■□ 3.71
UBE2D3-220ENST00000505307 MROH2BQ7Z745 1585 aa38.2■■■■□ 3.71
UBE2D3-220ENST00000505307 CUX2O14529 1486 aa38.13■■■■□ 3.69
UBE2D3-220ENST00000505307 NESP48681 1621 aa38.01■■■■□ 3.67
UBE2D3-220ENST00000505307 DNAJC5Q9H3Z4 198 aa37.91■■■■□ 3.66
UBE2D3-220ENST00000505307 LAMC3Q9Y6N6 1575 aa37.89■■■■□ 3.66
UBE2D3-220ENST00000505307 WIZO95785 1651 aa37.72■■■■□ 3.63
UBE2D3-220ENST00000505307 PDS5BQ9NTI5 1447 aa37.7■■■■□ 3.63
UBE2D3-220ENST00000505307 CADPSQ9ULU8 1353 aa37.64■■■■□ 3.62
UBE2D3-220ENST00000505307 THOC2Q8NI27 1593 aaKnown RBP37.6■■■■□ 3.61
UBE2D3-220ENST00000505307 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
UBE2D3-220ENST00000505307 KIF21AQ7Z4S6 1674 aa37.5■■■■□ 3.59
UBE2D3-220ENST00000505307 TOP2AP11388 1531 aaKnown RBP37.34■■■■□ 3.57
UBE2D3-220ENST00000505307 MRC2Q9UBG0 1479 aa37.31■■■■□ 3.56
UBE2D3-220ENST00000505307 CFTRP13569 1480 aa37.24■■■■□ 3.55
UBE2D3-220ENST00000505307 CEP164Q9UPV0 1460 aa37.2■■■■□ 3.55
UBE2D3-220ENST00000505307 WDR62O43379 1518 aa37.2■■■■□ 3.55
UBE2D3-220ENST00000505307 FANCD2Q9BXW9 1451 aa37.17■■■■□ 3.54
UBE2D3-220ENST00000505307 CCDC88BA6NC98 1476 aa36.9■■■■□ 3.5
UBE2D3-220ENST00000505307 URB2Q14146 1524 aaKnown RBP36.81■■■■□ 3.48
UBE2D3-220ENST00000505307 PRDM2Q13029 1718 aa36.79■■■■□ 3.48
UBE2D3-220ENST00000505307 ABCC8Q09428 1581 aa36.53■■■■□ 3.44
UBE2D3-220ENST00000505307 IFT140Q96RY7 1462 aa36.48■■■■□ 3.43
UBE2D3-220ENST00000505307 TOPBP1Q92547 1522 aa36.48■■■■□ 3.43
UBE2D3-220ENST00000505307 OSCARQ8IYS5 282 aa36.45■■■■□ 3.43
UBE2D3-220ENST00000505307 TRIM41Q8WV44 630 aa36.38■■■■□ 3.41
UBE2D3-220ENST00000505307 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
UBE2D3-220ENST00000505307 ZNF608Q9ULD9 1512 aaPredicted RBP36.3■■■■□ 3.4
UBE2D3-220ENST00000505307 POLA1P09884 1462 aaPredicted RBP36.11■■■■□ 3.37
UBE2D3-220ENST00000505307 EIF4G3O43432 1585 aaKnown RBP36.11■■■■□ 3.37
UBE2D3-220ENST00000505307 TARBP1Q13395 1621 aaKnown RBP36.11■■■■□ 3.37
UBE2D3-220ENST00000505307 AQRO60306 1485 aaKnown RBP eCLIP36.03■■■■□ 3.362e-7■■■■□ 25.1
UBE2D3-220ENST00000505307 SOGA1O94964 1423 aa36■■■■□ 3.35
UBE2D3-220ENST00000505307 SUPT5HO00267 1087 aaKnown RBP35.99■■■■□ 3.35
UBE2D3-220ENST00000505307 RAD54L2Q9Y4B4 1467 aa35.94■■■■□ 3.34
UBE2D3-220ENST00000505307 FGD5Q6ZNL6 1462 aa35.91■■■■□ 3.34
UBE2D3-220ENST00000505307 CUX1P39880 1505 aa35.88■■■■□ 3.33
UBE2D3-220ENST00000505307 WDR97A6NE52 1622 aa35.86■■■■□ 3.33
UBE2D3-220ENST00000505307 TDRD9Q8NDG6 1382 aaKnown RBP35.85■■■■□ 3.33
UBE2D3-220ENST00000505307 RIMBP3CA6NJZ7 1639 aa35.82■■■■□ 3.32
UBE2D3-220ENST00000505307 RIMBP3BA6NNM3 1639 aa35.82■■■■□ 3.32
UBE2D3-220ENST00000505307 RIMBP3Q9UFD9 1639 aa35.82■■■■□ 3.32
UBE2D3-220ENST00000505307 FBLN2P98095 1184 aa35.79■■■■□ 3.32
UBE2D3-220ENST00000505307 CHD1O14646 1710 aa35.77■■■■□ 3.32
UBE2D3-220ENST00000505307 ARHGEF11O15085 1522 aa35.77■■■■□ 3.32
UBE2D3-220ENST00000505307 SNAPC4Q5SXM2 1469 aa35.67■■■■□ 3.3
UBE2D3-220ENST00000505307 GRIN2BQ13224 1484 aa35.67■■■■□ 3.3
UBE2D3-220ENST00000505307 MAGI1Q96QZ7 1491 aaPredicted RBP35.66■■■■□ 3.3
UBE2D3-220ENST00000505307 CHMP7Q8WUX9 453 aaPredicted RBP35.61■■■■□ 3.29
UBE2D3-220ENST00000505307 ABCA10Q8WWZ4 1543 aa35.56■■■■□ 3.28
UBE2D3-220ENST00000505307 GAPVD1Q14C86 1478 aa35.55■■■■□ 3.28
UBE2D3-220ENST00000505307 CYB5RLQ6IPT4 315 aa35.52■■■■□ 3.28
UBE2D3-220ENST00000505307 SYNJ2O15056 1496 aa35.52■■■■□ 3.28
UBE2D3-220ENST00000505307 WRNQ14191 1432 aaPredicted RBP eCLIP35.49■■■■□ 3.27
UBE2D3-220ENST00000505307 SYNJ1O43426 1573 aa35.47■■■■□ 3.27
UBE2D3-220ENST00000505307 CLASP1Q7Z460 1538 aa35.43■■■■□ 3.26
UBE2D3-220ENST00000505307 PBRM1Q86U86 1689 aa35.43■■■■□ 3.26
UBE2D3-220ENST00000505307 ABCA5Q8WWZ7 1642 aa35.43■■■■□ 3.26
UBE2D3-220ENST00000505307 ARAP1Q96P48 1450 aa35.41■■■■□ 3.26
UBE2D3-220ENST00000505307 TOP2BQ02880 1626 aa35.39■■■■□ 3.26
UBE2D3-220ENST00000505307 BIVM-ERCC5R4GMW8 1640 aa35.38■■■■□ 3.25
UBE2D3-220ENST00000505307 GRIN2AQ12879 1464 aa35.18■■■■□ 3.22
UBE2D3-220ENST00000505307 ADAMTS12P58397 1594 aa35.14■■■■□ 3.22
UBE2D3-220ENST00000505307 FHAD1B1AJZ9 1412 aa35.14■■■■□ 3.22
UBE2D3-220ENST00000505307 ERICH3Q5RHP9 1530 aa35.12■■■■□ 3.21
UBE2D3-220ENST00000505307 TRHP20396 242 aaPredicted RBP35.11■■■■□ 3.21
UBE2D3-220ENST00000505307 NUP160Q12769 1436 aa35.07■■■■□ 3.21
UBE2D3-220ENST00000505307 CEP170Q5SW79 1584 aa34.98■■■■□ 3.19
UBE2D3-220ENST00000505307 SHROOM2Q13796 1616 aa34.84■■■■□ 3.17
UBE2D3-220ENST00000505307 ERCC6L2Q5T890 1561 aa34.82■■■■□ 3.16
UBE2D3-220ENST00000505307 KIF27Q86VH2 1401 aa34.78■■■■□ 3.16
UBE2D3-220ENST00000505307 JPH4Q96JJ6 628 aa34.75■■■■□ 3.15
UBE2D3-220ENST00000505307 IGF1RP08069 1367 aa34.72■■■■□ 3.15
UBE2D3-220ENST00000505307 PRG4Q92954 1404 aaPredicted RBP34.71■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms