RNA–Protein interactions for RNA: ENST00000486066.5

CHRD-216, Transcript of chordin, humanhuman

TSL 4

Gene CHRD, Length 546 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRD-216ENST00000486066 NISCHQ9Y2I1 1504 aa49.55■■■■■ 5.52
CHRD-216ENST00000486066 ABCC9O60706 1549 aa45■■■■■ 4.79
CHRD-216ENST00000486066 CCDC180Q9P1Z9 1646 aa44.72■■■■■ 4.75
CHRD-216ENST00000486066 DNAJC5BQ9UF47 199 aa42.72■■■■■ 4.43
CHRD-216ENST00000486066 RB1CC1Q8TDY2 1594 aa42.69■■■■■ 4.43
CHRD-216ENST00000486066 NACADO15069 1562 aa42.34■■■■■ 4.37
CHRD-216ENST00000486066 UNC13AQ9UPW8 1703 aa41.87■■■■■ 4.29
CHRD-216ENST00000486066 PABPN1Q86U42 306 aaKnown RBP eCLIP41.75■■■■■ 4.272e-7■■■■□ 23.1
CHRD-216ENST00000486066 MYO15BQ96JP2 1530 aa41.71■■■■■ 4.27
CHRD-216ENST00000486066 DCAF8L2P0C7V8 631 aa41.63■■■■■ 4.25
CHRD-216ENST00000486066 BICRAQ9NZM4 1560 aa41.62■■■■■ 4.25
CHRD-216ENST00000486066 ZCCHC6Q5VYS8 1495 aaKnown RBP41■■■■■ 4.15
CHRD-216ENST00000486066 DCAF1Q9Y4B6 1507 aa40.99■■■■■ 4.15
CHRD-216ENST00000486066 SHROOM4Q9ULL8 1493 aa40.98■■■■■ 4.15
CHRD-216ENST00000486066 CC2D2AQ9P2K1 1620 aa40.72■■■■■ 4.11
CHRD-216ENST00000486066 CECR2Q9BXF3 1484 aa40.62■■■■■ 4.09
CHRD-216ENST00000486066 SCRIBQ14160 1630 aa40.58■■■■■ 4.09
CHRD-216ENST00000486066 EIF4G1Q04637 1599 aaKnown RBP40.54■■■■■ 4.08
CHRD-216ENST00000486066 DNAJC5Q9H3Z4 198 aa39.53■■■■□ 3.92
CHRD-216ENST00000486066 NCAPD3P42695 1498 aa39.11■■■■□ 3.85
CHRD-216ENST00000486066 CUX2O14529 1486 aa39.06■■■■□ 3.84
CHRD-216ENST00000486066 ATAD2BQ9ULI0 1458 aa38.9■■■■□ 3.82
CHRD-216ENST00000486066 ERCC6Q03468 1493 aa38.81■■■■□ 3.8
CHRD-216ENST00000486066 HMGXB3Q12766 1538 aa38.79■■■■□ 3.8
CHRD-216ENST00000486066 SMARCA4P51532 1647 aa38.76■■■■□ 3.8
CHRD-216ENST00000486066 SMARCA2P51531 1590 aa38.74■■■■□ 3.79
CHRD-216ENST00000486066 NESP48681 1621 aa38.59■■■■□ 3.77
CHRD-216ENST00000486066 PEG3Q9GZU2 1588 aa38.48■■■■□ 3.75
CHRD-216ENST00000486066 BAZ1AQ9NRL2 1556 aaPredicted RBP38.45■■■■□ 3.75
CHRD-216ENST00000486066 BAZ1BQ9UIG0 1483 aaKnown RBP38.41■■■■□ 3.74
CHRD-216ENST00000486066 THOC2Q8NI27 1593 aaKnown RBP38.39■■■■□ 3.74
CHRD-216ENST00000486066 LAMC3Q9Y6N6 1575 aa38.28■■■■□ 3.72
CHRD-216ENST00000486066 MROH2BQ7Z745 1585 aa38.16■■■■□ 3.7
CHRD-216ENST00000486066 KIF21AQ7Z4S6 1674 aa38.12■■■■□ 3.69
CHRD-216ENST00000486066 PDS5BQ9NTI5 1447 aa37.98■■■■□ 3.67
CHRD-216ENST00000486066 CADPSQ9ULU8 1353 aa37.82■■■■□ 3.65
CHRD-216ENST00000486066 WDR62O43379 1518 aa37.73■■■■□ 3.63
CHRD-216ENST00000486066 MRC2Q9UBG0 1479 aa37.73■■■■□ 3.63
CHRD-216ENST00000486066 WIZO95785 1651 aa37.66■■■■□ 3.62
CHRD-216ENST00000486066 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
CHRD-216ENST00000486066 FANCD2Q9BXW9 1451 aa37.39■■■■□ 3.58
CHRD-216ENST00000486066 TRIM41Q8WV44 630 aa37.38■■■■□ 3.57
CHRD-216ENST00000486066 CFTRP13569 1480 aa37.36■■■■□ 3.57
CHRD-216ENST00000486066 RSF1Q96T23 1441 aaPredicted RBP37.19■■■■□ 3.54
CHRD-216ENST00000486066 TOP2AP11388 1531 aaKnown RBP37.17■■■■□ 3.54
CHRD-216ENST00000486066 URB2Q14146 1524 aaKnown RBP37.17■■■■□ 3.54
CHRD-216ENST00000486066 OSCARQ8IYS5 282 aa37.05■■■■□ 3.52
CHRD-216ENST00000486066 PRDM2Q13029 1718 aa36.99■■■■□ 3.51
CHRD-216ENST00000486066 RIMBP3CA6NJZ7 1639 aa36.77■■■■□ 3.48
CHRD-216ENST00000486066 RIMBP3BA6NNM3 1639 aa36.77■■■■□ 3.48
CHRD-216ENST00000486066 RIMBP3Q9UFD9 1639 aa36.77■■■■□ 3.48
CHRD-216ENST00000486066 ZNF608Q9ULD9 1512 aaPredicted RBP36.76■■■■□ 3.48
CHRD-216ENST00000486066 IFT140Q96RY7 1462 aa36.75■■■■□ 3.47
CHRD-216ENST00000486066 CCDC88BA6NC98 1476 aa36.73■■■■□ 3.47
CHRD-216ENST00000486066 TOPBP1Q92547 1522 aa36.66■■■■□ 3.46
CHRD-216ENST00000486066 ARHGEF11O15085 1522 aa36.59■■■■□ 3.45
CHRD-216ENST00000486066 EIF4G3O43432 1585 aaKnown RBP36.55■■■■□ 3.44
CHRD-216ENST00000486066 ABCC8Q09428 1581 aa36.52■■■■□ 3.44
CHRD-216ENST00000486066 DNMBPQ6XZF7 1577 aa36.49■■■■□ 3.43
CHRD-216ENST00000486066 TARBP1Q13395 1621 aaKnown RBP36.45■■■■□ 3.43
CHRD-216ENST00000486066 CHD1O14646 1710 aa36.37■■■■□ 3.41
CHRD-216ENST00000486066 AQRO60306 1485 aaKnown RBP eCLIP36.31■■■■□ 3.43e-7■■□□□ 11.6
CHRD-216ENST00000486066 POLA1P09884 1462 aaPredicted RBP36.27■■■■□ 3.4
CHRD-216ENST00000486066 ARAP1Q96P48 1450 aa36.23■■■■□ 3.39
CHRD-216ENST00000486066 CYB5RLQ6IPT4 315 aa36.18■■■■□ 3.38
CHRD-216ENST00000486066 RAD54L2Q9Y4B4 1467 aa36.1■■■■□ 3.37
CHRD-216ENST00000486066 WDR97A6NE52 1622 aa36.05■■■■□ 3.36
CHRD-216ENST00000486066 CLASP1Q7Z460 1538 aa36■■■■□ 3.35
CHRD-216ENST00000486066 SOGA1O94964 1423 aa36■■■■□ 3.35
CHRD-216ENST00000486066 TDRD9Q8NDG6 1382 aaKnown RBP35.98■■■■□ 3.35
CHRD-216ENST00000486066 FBLN2P98095 1184 aa35.95■■■■□ 3.35
CHRD-216ENST00000486066 SNAPC4Q5SXM2 1469 aa35.94■■■■□ 3.34
CHRD-216ENST00000486066 FGD5Q6ZNL6 1462 aa35.93■■■■□ 3.34
CHRD-216ENST00000486066 CUX1P39880 1505 aa35.88■■■■□ 3.33
CHRD-216ENST00000486066 MAGI1Q96QZ7 1491 aaPredicted RBP35.87■■■■□ 3.33
CHRD-216ENST00000486066 SYNJ1O43426 1573 aa35.82■■■■□ 3.32
CHRD-216ENST00000486066 TRHP20396 242 aaPredicted RBP35.82■■■■□ 3.32
CHRD-216ENST00000486066 GRIN2BQ13224 1484 aa35.79■■■■□ 3.32
CHRD-216ENST00000486066 SYNJ2O15056 1496 aa35.74■■■■□ 3.31
CHRD-216ENST00000486066 CHMP7Q8WUX9 453 aaPredicted RBP35.69■■■■□ 3.3
CHRD-216ENST00000486066 PBRM1Q86U86 1689 aa35.67■■■■□ 3.3
CHRD-216ENST00000486066 ABCA5Q8WWZ7 1642 aa35.59■■■■□ 3.29
CHRD-216ENST00000486066 GAPVD1Q14C86 1478 aa35.59■■■■□ 3.29
CHRD-216ENST00000486066 ABCA10Q8WWZ4 1543 aa35.56■■■■□ 3.28
CHRD-216ENST00000486066 ERCC6L2Q5T890 1561 aa35.37■■■■□ 3.25
CHRD-216ENST00000486066 GRIN2AQ12879 1464 aa35.35■■■■□ 3.25
CHRD-216ENST00000486066 ADAMTS12P58397 1594 aa35.32■■■■□ 3.24
CHRD-216ENST00000486066 NUP160Q12769 1436 aa35.32■■■■□ 3.24
CHRD-216ENST00000486066 CEP170Q5SW79 1584 aa35.3■■■■□ 3.24
CHRD-216ENST00000486066 SHROOM2Q13796 1616 aa35.26■■■■□ 3.24
CHRD-216ENST00000486066 BIVM-ERCC5R4GMW8 1640 aa35.23■■■■□ 3.23
CHRD-216ENST00000486066 WRNQ14191 1432 aaPredicted RBP eCLIP35.22■■■■□ 3.23
CHRD-216ENST00000486066 TOP2BQ02880 1626 aa35.19■■■■□ 3.22
CHRD-216ENST00000486066 FHAD1B1AJZ9 1412 aa35.13■■■■□ 3.21
CHRD-216ENST00000486066 ERICH3Q5RHP9 1530 aa35.09■■■■□ 3.21
CHRD-216ENST00000486066 AEBP2Q6ZN18 517 aaPredicted RBP35.07■■■■□ 3.2
CHRD-216ENST00000486066 KIF13AQ9H1H9 1805 aa35.02■■■■□ 3.2
CHRD-216ENST00000486066 SUPT5HO00267 1087 aaKnown RBP34.9■■■■□ 3.18
CHRD-216ENST00000486066 PRG4Q92954 1404 aaPredicted RBP34.88■■■■□ 3.17
CHRD-216ENST00000486066 RUSC2Q8N2Y8 1516 aa34.85■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms