RNA–Protein interactions for RNA: ENST00000453744.6

UBE2D3-210, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 3,990 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-210ENST00000453744 NISCHQ9Y2I1 1504 aa25.53■■□□□ 1.68
UBE2D3-210ENST00000453744 SUPT5HO00267 1087 aaKnown RBP23.66■■□□□ 1.38
UBE2D3-210ENST00000453744 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
UBE2D3-210ENST00000453744 DCAF8L2P0C7V8 631 aa23.15■■□□□ 1.3
UBE2D3-210ENST00000453744 PCGF6Q9BYE7 350 aa23.01■■□□□ 1.27
UBE2D3-210ENST00000453744 HRCP23327 699 aa22.81■■□□□ 1.24
UBE2D3-210ENST00000453744 PPARGC1BQ86YN6 1023 aaKnown RBP22.69■■□□□ 1.22
UBE2D3-210ENST00000453744 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
UBE2D3-210ENST00000453744 EHMT2Q96KQ7 1210 aa22.33■■□□□ 1.17
UBE2D3-210ENST00000453744 LOC105371045A0A1W2PR82 267 aa22.31■■□□□ 1.16
UBE2D3-210ENST00000453744 MYO15BQ96JP2 1530 aa22.11■■□□□ 1.13
UBE2D3-210ENST00000453744 FAM9AQ8IZU1 332 aaPredicted RBP22.08■■□□□ 1.12
UBE2D3-210ENST00000453744 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
UBE2D3-210ENST00000453744 PELP1Q8IZL8 1130 aaKnown RBP21.76■■□□□ 1.07
UBE2D3-210ENST00000453744 ZEB1P37275 1124 aaPredicted RBP21.75■■□□□ 1.07
UBE2D3-210ENST00000453744 TRIM41Q8WV44 630 aa21.71■■□□□ 1.07
UBE2D3-210ENST00000453744 TTBK1Q5TCY1 1321 aaPredicted RBP21.67■■□□□ 1.06
UBE2D3-210ENST00000453744 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.04
UBE2D3-210ENST00000453744 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.03
UBE2D3-210ENST00000453744 DCAF1Q9Y4B6 1507 aa21.5■■□□□ 1.03
UBE2D3-210ENST00000453744 SCAF1Q9H7N4 1312 aaKnown RBP21.46■■□□□ 1.03
UBE2D3-210ENST00000453744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.39■■□□□ 1.02
UBE2D3-210ENST00000453744 CENPBP07199 599 aaPredicted RBP21.31■■□□□ 1
UBE2D3-210ENST00000453744 YTHDC1Q96MU7 727 aaKnown RBP21.28■■□□□ 1
UBE2D3-210ENST00000453744 GTF3C3Q9Y5Q9 886 aa21.19■□□□□ 0.98
UBE2D3-210ENST00000453744 DIEXFQ68CQ4 756 aaKnown RBP21.13■□□□□ 0.97
UBE2D3-210ENST00000453744 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
UBE2D3-210ENST00000453744 NEUROD1Q13562 356 aa21.12■□□□□ 0.97
UBE2D3-210ENST00000453744 CCDC180Q9P1Z9 1646 aa21.03■□□□□ 0.96
UBE2D3-210ENST00000453744 UBTFP17480 764 aaKnown RBP20.88■□□□□ 0.93
UBE2D3-210ENST00000453744 RANGAP1P46060 587 aaPredicted RBP20.87■□□□□ 0.93
UBE2D3-210ENST00000453744 MYT1Q01538 1121 aa20.83■□□□□ 0.93
UBE2D3-210ENST00000453744 HNRNPUL2Q1KMD3 747 aaKnown RBP20.79■□□□□ 0.92
UBE2D3-210ENST00000453744 APLP2Q06481 763 aa20.69■□□□□ 0.9
UBE2D3-210ENST00000453744 RSF1Q96T23 1441 aaPredicted RBP20.67■□□□□ 0.9
UBE2D3-210ENST00000453744 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
UBE2D3-210ENST00000453744 SCRIBQ14160 1630 aa20.58■□□□□ 0.89
UBE2D3-210ENST00000453744 MIER1Q8N108 512 aa20.51■□□□□ 0.87
UBE2D3-210ENST00000453744 RB1CC1Q8TDY2 1594 aa20.44■□□□□ 0.86
UBE2D3-210ENST00000453744 ABCC9O60706 1549 aa20.33■□□□□ 0.84
UBE2D3-210ENST00000453744 ITGAEP38570 1179 aa20.3■□□□□ 0.84
UBE2D3-210ENST00000453744 CSRNP3Q8WYN3 585 aa20.29■□□□□ 0.84
UBE2D3-210ENST00000453744 BCANQ96GW7 911 aa20.27■□□□□ 0.84
UBE2D3-210ENST00000453744 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
UBE2D3-210ENST00000453744 CEP162Q5TB80 1403 aa20.21■□□□□ 0.83
UBE2D3-210ENST00000453744 MROH2BQ7Z745 1585 aa20.05■□□□□ 0.8
UBE2D3-210ENST00000453744 NEFLP07196 543 aa20.05■□□□□ 0.8
UBE2D3-210ENST00000453744 SOGA1O94964 1423 aa20.05■□□□□ 0.8
UBE2D3-210ENST00000453744 ATP1B4Q9UN42 357 aaPredicted RBP20■□□□□ 0.79
UBE2D3-210ENST00000453744 CCDC88BA6NC98 1476 aa19.99■□□□□ 0.79
UBE2D3-210ENST00000453744 SUPT16HQ9Y5B9 1047 aaKnown RBP19.98■□□□□ 0.79
UBE2D3-210ENST00000453744 ABCC8Q09428 1581 aa19.98■□□□□ 0.79
UBE2D3-210ENST00000453744 TNIKQ9UKE5 1360 aa19.97■□□□□ 0.79
UBE2D3-210ENST00000453744 PABPN1Q86U42 306 aaKnown RBP eCLIP19.96■□□□□ 0.79
UBE2D3-210ENST00000453744 ERICH6Q7L0X2 663 aa19.91■□□□□ 0.78
UBE2D3-210ENST00000453744 WIZO95785 1651 aa19.9■□□□□ 0.78
UBE2D3-210ENST00000453744 FKBP8Q14318 412 aa19.9■□□□□ 0.78
UBE2D3-210ENST00000453744 CLIP1P30622 1438 aa19.85■□□□□ 0.77
UBE2D3-210ENST00000453744 RUSC2Q8N2Y8 1516 aa19.83■□□□□ 0.76
UBE2D3-210ENST00000453744 DDX10Q13206 875 aaKnown RBP19.81■□□□□ 0.76
UBE2D3-210ENST00000453744 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.765e-6■■■■■ 29.2
UBE2D3-210ENST00000453744 GOLGA3Q08378 1498 aa19.79■□□□□ 0.76
UBE2D3-210ENST00000453744 ANP32EQ9BTT0 268 aa19.78■□□□□ 0.76
UBE2D3-210ENST00000453744 HIRIP3Q9BW71 556 aaPredicted RBP19.78■□□□□ 0.76
UBE2D3-210ENST00000453744 TSHZ2Q9NRE2 1034 aa19.77■□□□□ 0.76
UBE2D3-210ENST00000453744 TRIM52Q96A61 297 aa19.76■□□□□ 0.75
UBE2D3-210ENST00000453744 CLSPNQ9HAW4 1339 aa19.74■□□□□ 0.75
UBE2D3-210ENST00000453744 KCNH8Q96L42 1107 aa19.74■□□□□ 0.75
UBE2D3-210ENST00000453744 FAM50AQ14320 339 aaKnown RBP19.73■□□□□ 0.75
UBE2D3-210ENST00000453744 EEA1Q15075 1411 aa19.68■□□□□ 0.74
UBE2D3-210ENST00000453744 CNGB1Q14028 1251 aaPredicted RBP19.62■□□□□ 0.73
UBE2D3-210ENST00000453744 ANP32CO43423 234 aa19.61■□□□□ 0.73
UBE2D3-210ENST00000453744 BCL11AQ9H165 835 aa19.61■□□□□ 0.73
UBE2D3-210ENST00000453744 BAZ1AQ9NRL2 1556 aaPredicted RBP19.6■□□□□ 0.73
UBE2D3-210ENST00000453744 KANK4Q5T7N3 995 aaPredicted RBP19.6■□□□□ 0.73
UBE2D3-210ENST00000453744 IRX6P78412 446 aaPredicted RBP19.59■□□□□ 0.73
UBE2D3-210ENST00000453744 CEP164Q9UPV0 1460 aa19.57■□□□□ 0.72
UBE2D3-210ENST00000453744 VPS8Q8N3P4 1428 aa19.56■□□□□ 0.72
UBE2D3-210ENST00000453744 P3H3Q8IVL6 736 aa19.55■□□□□ 0.72
UBE2D3-210ENST00000453744 NACADO15069 1562 aa19.54■□□□□ 0.72
UBE2D3-210ENST00000453744 SIN3AQ96ST3 1273 aa19.53■□□□□ 0.72
UBE2D3-210ENST00000453744 DHX57Q6P158 1386 aaKnown RBP19.51■□□□□ 0.71
UBE2D3-210ENST00000453744 RBM19Q9Y4C8 960 aaKnown RBP19.48■□□□□ 0.71
UBE2D3-210ENST00000453744 CDK11AQ9UQ88 783 aaPredicted RBP19.47■□□□□ 0.71
UBE2D3-210ENST00000453744 HNRNPUQ00839 825 aaKnown RBP eCLIP19.45■□□□□ 0.7
UBE2D3-210ENST00000453744 RAPGEF2Q9Y4G8 1499 aa19.42■□□□□ 0.7
UBE2D3-210ENST00000453744 TOP2AP11388 1531 aaKnown RBP19.42■□□□□ 0.7
UBE2D3-210ENST00000453744 POLR3GLQ9BT43 218 aa19.39■□□□□ 0.69
UBE2D3-210ENST00000453744 SMARCA2P51531 1590 aa19.33■□□□□ 0.69
UBE2D3-210ENST00000453744 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.68
UBE2D3-210ENST00000453744 RAB3GAP2Q9H2M9 1393 aa19.27■□□□□ 0.68
UBE2D3-210ENST00000453744 TONSLQ96HA7 1378 aa19.27■□□□□ 0.67
UBE2D3-210ENST00000453744 FAM9BQ8IZU0 186 aa19.26■□□□□ 0.67
UBE2D3-210ENST00000453744 NBR1Q14596 966 aa19.25■□□□□ 0.67
UBE2D3-210ENST00000453744 SMARCA4P51532 1647 aa19.23■□□□□ 0.67
UBE2D3-210ENST00000453744 SENP3-EIF4A1A0A087X0R7 540 aa19.23■□□□□ 0.67
UBE2D3-210ENST00000453744 KIF21BO75037 1637 aa19.19■□□□□ 0.66
UBE2D3-210ENST00000453744 B4GALNT3Q6L9W6 998 aa19.13■□□□□ 0.65
UBE2D3-210ENST00000453744 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
UBE2D3-210ENST00000453744 RTL5Q5HYW3 569 aaPredicted RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms