RNA–Protein interactions for RNA: ENST00000428017.5

VARS2-203, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 1,103 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-203ENST00000428017 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
VARS2-203ENST00000428017 CCDC180Q9P1Z9 1646 aa31.68■■■□□ 2.66
VARS2-203ENST00000428017 ABCC9O60706 1549 aa30.75■■■□□ 2.51
VARS2-203ENST00000428017 DCAF8L2P0C7V8 631 aa30■■■□□ 2.39
VARS2-203ENST00000428017 ZCCHC6Q5VYS8 1495 aaKnown RBP29.96■■■□□ 2.39
VARS2-203ENST00000428017 NACADO15069 1562 aa29.77■■■□□ 2.36
VARS2-203ENST00000428017 RB1CC1Q8TDY2 1594 aa29.72■■■□□ 2.35
VARS2-203ENST00000428017 DCAF1Q9Y4B6 1507 aa29.69■■■□□ 2.34
VARS2-203ENST00000428017 MYO15BQ96JP2 1530 aa29.67■■■□□ 2.34
VARS2-203ENST00000428017 SCRIBQ14160 1630 aa28.99■■■□□ 2.23
VARS2-203ENST00000428017 UNC13AQ9UPW8 1703 aa28.87■■■□□ 2.21
VARS2-203ENST00000428017 PABPN1Q86U42 306 aaKnown RBP eCLIP28.83■■■□□ 2.215e-7■■■■□ 20
VARS2-203ENST00000428017 BICRAQ9NZM4 1560 aa28.71■■■□□ 2.19
VARS2-203ENST00000428017 SHROOM4Q9ULL8 1493 aa28.66■■■□□ 2.18
VARS2-203ENST00000428017 EIF4G1Q04637 1599 aaKnown RBP27.99■■■□□ 2.07
VARS2-203ENST00000428017 CECR2Q9BXF3 1484 aa27.9■■■□□ 2.06
VARS2-203ENST00000428017 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
VARS2-203ENST00000428017 BAZ1AQ9NRL2 1556 aaPredicted RBP27.81■■■□□ 2.04
VARS2-203ENST00000428017 CC2D2AQ9P2K1 1620 aa27.78■■■□□ 2.04
VARS2-203ENST00000428017 SMARCA4P51532 1647 aa27.74■■■□□ 2.03
VARS2-203ENST00000428017 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
VARS2-203ENST00000428017 ATAD2BQ9ULI0 1458 aa27.54■■■□□ 2
VARS2-203ENST00000428017 SMARCA2P51531 1590 aa27.53■■■□□ 2
VARS2-203ENST00000428017 RSF1Q96T23 1441 aaPredicted RBP27.5■■□□□ 1.99
VARS2-203ENST00000428017 NCAPD3P42695 1498 aa27.46■■□□□ 1.99
VARS2-203ENST00000428017 PEG3Q9GZU2 1588 aa27.44■■□□□ 1.98
VARS2-203ENST00000428017 BAZ1BQ9UIG0 1483 aaKnown RBP27.37■■□□□ 1.97
VARS2-203ENST00000428017 HMGXB3Q12766 1538 aa27.34■■□□□ 1.97
VARS2-203ENST00000428017 WIZO95785 1651 aa27.33■■□□□ 1.97
VARS2-203ENST00000428017 SUPT5HO00267 1087 aaKnown RBP27.19■■□□□ 1.94
VARS2-203ENST00000428017 TOP2AP11388 1531 aaKnown RBP27.12■■□□□ 1.93
VARS2-203ENST00000428017 CCDC88BA6NC98 1476 aa26.81■■□□□ 1.88
VARS2-203ENST00000428017 CADPSQ9ULU8 1353 aa26.71■■□□□ 1.87
VARS2-203ENST00000428017 NESP48681 1621 aa26.67■■□□□ 1.86
VARS2-203ENST00000428017 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
VARS2-203ENST00000428017 CFTRP13569 1480 aa26.61■■□□□ 1.85
VARS2-203ENST00000428017 PDS5BQ9NTI5 1447 aa26.55■■□□□ 1.84
VARS2-203ENST00000428017 ERCC6Q03468 1493 aa26.54■■□□□ 1.84
VARS2-203ENST00000428017 FANCD2Q9BXW9 1451 aa26.41■■□□□ 1.82
VARS2-203ENST00000428017 CEP164Q9UPV0 1460 aa26.35■■□□□ 1.81
VARS2-203ENST00000428017 KIF21AQ7Z4S6 1674 aa26.31■■□□□ 1.8
VARS2-203ENST00000428017 PRDM2Q13029 1718 aa26.31■■□□□ 1.8
VARS2-203ENST00000428017 MRC2Q9UBG0 1479 aa26.23■■□□□ 1.79
VARS2-203ENST00000428017 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
VARS2-203ENST00000428017 WDR62O43379 1518 aa26.08■■□□□ 1.77
VARS2-203ENST00000428017 URB2Q14146 1524 aaKnown RBP26.07■■□□□ 1.76
VARS2-203ENST00000428017 ABCC8Q09428 1581 aa26.06■■□□□ 1.76
VARS2-203ENST00000428017 CUX2O14529 1486 aa26.05■■□□□ 1.76
VARS2-203ENST00000428017 TOPBP1Q92547 1522 aa26■■□□□ 1.75
VARS2-203ENST00000428017 DNMBPQ6XZF7 1577 aa25.99■■□□□ 1.75
VARS2-203ENST00000428017 WRNQ14191 1432 aaPredicted RBP eCLIP25.96■■□□□ 1.75
VARS2-203ENST00000428017 CUX1P39880 1505 aa25.92■■□□□ 1.74
VARS2-203ENST00000428017 FGD5Q6ZNL6 1462 aa25.81■■□□□ 1.72
VARS2-203ENST00000428017 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
VARS2-203ENST00000428017 SYNJ1O43426 1573 aa25.79■■□□□ 1.72
VARS2-203ENST00000428017 TOP2BQ02880 1626 aa25.79■■□□□ 1.72
VARS2-203ENST00000428017 IFT140Q96RY7 1462 aa25.78■■□□□ 1.72
VARS2-203ENST00000428017 BIVM-ERCC5R4GMW8 1640 aa25.75■■□□□ 1.71
VARS2-203ENST00000428017 SOGA1O94964 1423 aa25.75■■□□□ 1.71
VARS2-203ENST00000428017 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.7
VARS2-203ENST00000428017 TRIM41Q8WV44 630 aa25.68■■□□□ 1.7
VARS2-203ENST00000428017 TARBP1Q13395 1621 aaKnown RBP25.63■■□□□ 1.69
VARS2-203ENST00000428017 ZNF608Q9ULD9 1512 aaPredicted RBP25.58■■□□□ 1.69
VARS2-203ENST00000428017 ABCA10Q8WWZ4 1543 aa25.57■■□□□ 1.68
VARS2-203ENST00000428017 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
VARS2-203ENST00000428017 CHIC1Q5VXU3 224 aa25.53■■□□□ 1.68
VARS2-203ENST00000428017 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.686e-6■■■■□ 25.1
VARS2-203ENST00000428017 WDR97A6NE52 1622 aa25.48■■□□□ 1.67
VARS2-203ENST00000428017 EIF4G3O43432 1585 aaKnown RBP25.48■■□□□ 1.67
VARS2-203ENST00000428017 GAPVD1Q14C86 1478 aa25.45■■□□□ 1.66
VARS2-203ENST00000428017 KIF27Q86VH2 1401 aa25.41■■□□□ 1.66
VARS2-203ENST00000428017 GRIN2BQ13224 1484 aa25.4■■□□□ 1.66
VARS2-203ENST00000428017 ABCA5Q8WWZ7 1642 aa25.38■■□□□ 1.65
VARS2-203ENST00000428017 SNAPC4Q5SXM2 1469 aa25.29■■□□□ 1.64
VARS2-203ENST00000428017 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
VARS2-203ENST00000428017 ERICH3Q5RHP9 1530 aa25.27■■□□□ 1.64
VARS2-203ENST00000428017 PBRM1Q86U86 1689 aa25.26■■□□□ 1.63
VARS2-203ENST00000428017 FBLN2P98095 1184 aa25.25■■□□□ 1.63
VARS2-203ENST00000428017 CHMP7Q8WUX9 453 aaPredicted RBP25.22■■□□□ 1.63
VARS2-203ENST00000428017 IGF1RP08069 1367 aa25.21■■□□□ 1.63
VARS2-203ENST00000428017 RUSC2Q8N2Y8 1516 aa25.2■■□□□ 1.62
VARS2-203ENST00000428017 SYNJ2O15056 1496 aa25.18■■□□□ 1.62
VARS2-203ENST00000428017 FHAD1B1AJZ9 1412 aa25.17■■□□□ 1.62
VARS2-203ENST00000428017 EEA1Q15075 1411 aa25.16■■□□□ 1.62
VARS2-203ENST00000428017 ADAMTS12P58397 1594 aa25.14■■□□□ 1.61
VARS2-203ENST00000428017 FAM9AQ8IZU1 332 aaPredicted RBP25.13■■□□□ 1.61
VARS2-203ENST00000428017 OSCARQ8IYS5 282 aa25.11■■□□□ 1.61
VARS2-203ENST00000428017 CARMIL1Q5VZK9 1371 aa25.1■■□□□ 1.61
VARS2-203ENST00000428017 CSRNP3Q8WYN3 585 aa25.09■■□□□ 1.61
VARS2-203ENST00000428017 CUL7Q14999 1698 aa25.09■■□□□ 1.61
VARS2-203ENST00000428017 GRIN2AQ12879 1464 aa25.05■■□□□ 1.6
VARS2-203ENST00000428017 CHD1O14646 1710 aa25.04■■□□□ 1.6
VARS2-203ENST00000428017 RAPGEF2Q9Y4G8 1499 aa24.99■■□□□ 1.59
VARS2-203ENST00000428017 PRXQ9BXM0 1461 aa24.95■■□□□ 1.58
VARS2-203ENST00000428017 NUP160Q12769 1436 aa24.91■■□□□ 1.58
VARS2-203ENST00000428017 CEP170Q5SW79 1584 aa24.86■■□□□ 1.57
VARS2-203ENST00000428017 DNAJC5Q9H3Z4 198 aa24.84■■□□□ 1.57
VARS2-203ENST00000428017 CLASP1Q7Z460 1538 aa24.81■■□□□ 1.56
VARS2-203ENST00000428017 KIF21BO75037 1637 aa24.8■■□□□ 1.56
VARS2-203ENST00000428017 EHMT2Q96KQ7 1210 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms