RNA–Protein interactions for RNA: ENST00000513098.5

UBE2D3-231, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 3

Gene UBE2D3, Length 702 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-231ENST00000513098 NISCHQ9Y2I1 1504 aa31.28■■■□□ 2.6
UBE2D3-231ENST00000513098 CCDC180Q9P1Z9 1646 aa27.97■■■□□ 2.07
UBE2D3-231ENST00000513098 ABCC9O60706 1549 aa27.77■■■□□ 2.04
UBE2D3-231ENST00000513098 RB1CC1Q8TDY2 1594 aa26.55■■□□□ 1.84
UBE2D3-231ENST00000513098 NACADO15069 1562 aa26.46■■□□□ 1.83
UBE2D3-231ENST00000513098 DCAF8L2P0C7V8 631 aa26.27■■□□□ 1.8
UBE2D3-231ENST00000513098 MYO15BQ96JP2 1530 aa26.23■■□□□ 1.79
UBE2D3-231ENST00000513098 DNAJC5BQ9UF47 199 aa26.02■■□□□ 1.76
UBE2D3-231ENST00000513098 ZCCHC6Q5VYS8 1495 aaKnown RBP25.93■■□□□ 1.74
UBE2D3-231ENST00000513098 PABPN1Q86U42 306 aaKnown RBP eCLIP25.92■■□□□ 1.74
UBE2D3-231ENST00000513098 DCAF1Q9Y4B6 1507 aa25.91■■□□□ 1.74
UBE2D3-231ENST00000513098 UNC13AQ9UPW8 1703 aa25.9■■□□□ 1.74
UBE2D3-231ENST00000513098 BICRAQ9NZM4 1560 aa25.78■■□□□ 1.72
UBE2D3-231ENST00000513098 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
UBE2D3-231ENST00000513098 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
UBE2D3-231ENST00000513098 CC2D2AQ9P2K1 1620 aa25.12■■□□□ 1.61
UBE2D3-231ENST00000513098 EIF4G1Q04637 1599 aaKnown RBP25.12■■□□□ 1.61
UBE2D3-231ENST00000513098 CECR2Q9BXF3 1484 aa25.05■■□□□ 1.6
UBE2D3-231ENST00000513098 NCAPD3P42695 1498 aa24.47■■□□□ 1.51
UBE2D3-231ENST00000513098 ATAD2BQ9ULI0 1458 aa24.36■■□□□ 1.49
UBE2D3-231ENST00000513098 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
UBE2D3-231ENST00000513098 SMARCA2P51531 1590 aa24.29■■□□□ 1.48
UBE2D3-231ENST00000513098 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
UBE2D3-231ENST00000513098 HMGXB3Q12766 1538 aa24.24■■□□□ 1.47
UBE2D3-231ENST00000513098 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
UBE2D3-231ENST00000513098 BAZ1BQ9UIG0 1483 aaKnown RBP24.08■■□□□ 1.45
UBE2D3-231ENST00000513098 MROH2BQ7Z745 1585 aa24.06■■□□□ 1.44
UBE2D3-231ENST00000513098 ERCC6Q03468 1493 aa23.97■■□□□ 1.43
UBE2D3-231ENST00000513098 CUX2O14529 1486 aa23.96■■□□□ 1.43
UBE2D3-231ENST00000513098 NESP48681 1621 aa23.91■■□□□ 1.42
UBE2D3-231ENST00000513098 DNAJC5Q9H3Z4 198 aa23.84■■□□□ 1.41
UBE2D3-231ENST00000513098 LAMC3Q9Y6N6 1575 aa23.82■■□□□ 1.4
UBE2D3-231ENST00000513098 WIZO95785 1651 aa23.74■■□□□ 1.39
UBE2D3-231ENST00000513098 PDS5BQ9NTI5 1447 aa23.71■■□□□ 1.39
UBE2D3-231ENST00000513098 CADPSQ9ULU8 1353 aa23.71■■□□□ 1.39
UBE2D3-231ENST00000513098 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
UBE2D3-231ENST00000513098 THOC2Q8NI27 1593 aaKnown RBP23.63■■□□□ 1.37
UBE2D3-231ENST00000513098 KIF21AQ7Z4S6 1674 aa23.57■■□□□ 1.36
UBE2D3-231ENST00000513098 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
UBE2D3-231ENST00000513098 CFTRP13569 1480 aa23.46■■□□□ 1.35
UBE2D3-231ENST00000513098 MRC2Q9UBG0 1479 aa23.44■■□□□ 1.34
UBE2D3-231ENST00000513098 WDR62O43379 1518 aa23.39■■□□□ 1.34
UBE2D3-231ENST00000513098 FANCD2Q9BXW9 1451 aa23.37■■□□□ 1.33
UBE2D3-231ENST00000513098 CEP164Q9UPV0 1460 aa23.36■■□□□ 1.33
UBE2D3-231ENST00000513098 CCDC88BA6NC98 1476 aa23.26■■□□□ 1.31
UBE2D3-231ENST00000513098 URB2Q14146 1524 aaKnown RBP23.17■■□□□ 1.3
UBE2D3-231ENST00000513098 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
UBE2D3-231ENST00000513098 ABCC8Q09428 1581 aa22.98■■□□□ 1.27
UBE2D3-231ENST00000513098 TOPBP1Q92547 1522 aa22.95■■□□□ 1.26
UBE2D3-231ENST00000513098 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
UBE2D3-231ENST00000513098 OSCARQ8IYS5 282 aa22.94■■□□□ 1.26
UBE2D3-231ENST00000513098 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
UBE2D3-231ENST00000513098 ZNF608Q9ULD9 1512 aaPredicted RBP22.84■■□□□ 1.25
UBE2D3-231ENST00000513098 TARBP1Q13395 1621 aaKnown RBP22.74■■□□□ 1.23
UBE2D3-231ENST00000513098 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
UBE2D3-231ENST00000513098 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
UBE2D3-231ENST00000513098 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
UBE2D3-231ENST00000513098 AQRO60306 1485 aaKnown RBP eCLIP22.68■■□□□ 1.222e-7■■■■■ 32
UBE2D3-231ENST00000513098 SOGA1O94964 1423 aa22.65■■□□□ 1.22
UBE2D3-231ENST00000513098 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
UBE2D3-231ENST00000513098 RAD54L2Q9Y4B4 1467 aa22.62■■□□□ 1.21
UBE2D3-231ENST00000513098 CUX1P39880 1505 aa22.6■■□□□ 1.21
UBE2D3-231ENST00000513098 FGD5Q6ZNL6 1462 aa22.58■■□□□ 1.2
UBE2D3-231ENST00000513098 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
UBE2D3-231ENST00000513098 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
UBE2D3-231ENST00000513098 RIMBP3CA6NJZ7 1639 aa22.49■■□□□ 1.19
UBE2D3-231ENST00000513098 RIMBP3BA6NNM3 1639 aa22.49■■□□□ 1.19
UBE2D3-231ENST00000513098 RIMBP3Q9UFD9 1639 aa22.49■■□□□ 1.19
UBE2D3-231ENST00000513098 CHD1O14646 1710 aa22.47■■□□□ 1.19
UBE2D3-231ENST00000513098 ARHGEF11O15085 1522 aa22.47■■□□□ 1.19
UBE2D3-231ENST00000513098 FBLN2P98095 1184 aa22.46■■□□□ 1.19
UBE2D3-231ENST00000513098 GRIN2BQ13224 1484 aa22.43■■□□□ 1.18
UBE2D3-231ENST00000513098 MAGI1Q96QZ7 1491 aaPredicted RBP22.42■■□□□ 1.18
UBE2D3-231ENST00000513098 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
UBE2D3-231ENST00000513098 CHMP7Q8WUX9 453 aaPredicted RBP22.39■■□□□ 1.17
UBE2D3-231ENST00000513098 ABCA10Q8WWZ4 1543 aa22.39■■□□□ 1.17
UBE2D3-231ENST00000513098 GAPVD1Q14C86 1478 aa22.36■■□□□ 1.17
UBE2D3-231ENST00000513098 SYNJ2O15056 1496 aa22.34■■□□□ 1.17
UBE2D3-231ENST00000513098 WRNQ14191 1432 aaPredicted RBP eCLIP22.33■■□□□ 1.17
UBE2D3-231ENST00000513098 CYB5RLQ6IPT4 315 aa22.33■■□□□ 1.17
UBE2D3-231ENST00000513098 TOP2BQ02880 1626 aa22.29■■□□□ 1.16
UBE2D3-231ENST00000513098 ABCA5Q8WWZ7 1642 aa22.29■■□□□ 1.16
UBE2D3-231ENST00000513098 CLASP1Q7Z460 1538 aa22.29■■□□□ 1.16
UBE2D3-231ENST00000513098 SYNJ1O43426 1573 aa22.28■■□□□ 1.16
UBE2D3-231ENST00000513098 BIVM-ERCC5R4GMW8 1640 aa22.27■■□□□ 1.16
UBE2D3-231ENST00000513098 ARAP1Q96P48 1450 aa22.26■■□□□ 1.15
UBE2D3-231ENST00000513098 PBRM1Q86U86 1689 aa22.26■■□□□ 1.15
UBE2D3-231ENST00000513098 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
UBE2D3-231ENST00000513098 ERICH3Q5RHP9 1530 aa22.11■■□□□ 1.13
UBE2D3-231ENST00000513098 FHAD1B1AJZ9 1412 aa22.11■■□□□ 1.13
UBE2D3-231ENST00000513098 ADAMTS12P58397 1594 aa22.08■■□□□ 1.13
UBE2D3-231ENST00000513098 NUP160Q12769 1436 aa22.08■■□□□ 1.13
UBE2D3-231ENST00000513098 CEP170Q5SW79 1584 aa22■■□□□ 1.11
UBE2D3-231ENST00000513098 TRHP20396 242 aaPredicted RBP21.98■■□□□ 1.11
UBE2D3-231ENST00000513098 SHROOM2Q13796 1616 aa21.94■■□□□ 1.1
UBE2D3-231ENST00000513098 IGF1RP08069 1367 aa21.91■■□□□ 1.1
UBE2D3-231ENST00000513098 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
UBE2D3-231ENST00000513098 JPH4Q96JJ6 628 aa21.89■■□□□ 1.09
UBE2D3-231ENST00000513098 KIF27Q86VH2 1401 aa21.89■■□□□ 1.09
UBE2D3-231ENST00000513098 PRG4Q92954 1404 aaPredicted RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms